Wall clock time and date at job start Wed Apr 1 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38357 * 119.40484 * 2 1 4 4 C 1.38339 * 119.45815 * 179.97438 * 3 2 1 5 5 C 1.39985 * 118.34871 * 359.97438 * 4 3 2 6 6 C 1.47526 * 120.59587 * 179.97438 * 5 4 3 7 7 O 1.21587 * 120.00212 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00221 * 0.02562 * 6 5 4 9 9 C 1.46493 * 120.00331 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.73441 * 35.00383 * 9 8 6 11 11 C 1.53330 * 109.73950 * 274.34341 * 9 8 6 12 12 C 1.52588 * 108.40604 * 176.21642 * 11 9 8 13 13 C 1.53006 * 111.05681 * 62.35016 * 12 11 9 14 14 H 1.09004 * 112.07149 * 74.01266 * 13 12 11 15 15 C 1.55344 * 106.42338 * 197.21124 * 13 12 11 16 16 N 1.47172 * 106.96229 * 91.62177 * 15 13 12 17 17 C 1.36935 * 125.64810 * 180.93474 * 16 15 13 18 18 H 1.07998 * 119.99963 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00240 * 0.02989 * 17 16 15 20 20 N 1.31615 * 119.99711 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00141 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47448 * 59.99506 * 21 19 17 23 23 H 1.48507 * 109.46987 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47130 * 299.99349 * 21 19 17 25 25 C 1.47813 * 108.70268 * 0.95470 * 16 15 13 26 26 C 1.53906 * 104.06226 * 23.35613 * 25 16 15 27 27 H 1.08992 * 109.21149 * 77.29576 * 26 25 16 28 28 C 1.50737 * 112.98046 * 198.50632 * 26 25 16 29 29 C 1.40278 * 118.80587 * 0.02562 * 5 4 3 30 30 O 1.35427 * 119.79697 * 180.02562 * 29 5 4 31 31 N 1.31873 * 119.41005 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47087 * 270.02196 * 1 2 3 33 33 H 1.08997 * 109.47570 * 30.01994 * 1 2 3 34 34 H 1.08999 * 109.47157 * 150.02114 * 1 2 3 35 35 H 1.08003 * 120.27450 * 0.02562 * 3 2 1 36 36 H 1.08007 * 120.82426 * 180.25245 * 4 3 2 37 37 H 0.97009 * 119.99461 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.67569 * 295.94247 * 11 9 8 39 39 H 1.08996 * 109.67783 * 56.48707 * 11 9 8 40 40 H 1.09001 * 109.16404 * 182.76064 * 12 11 9 41 41 H 1.09005 * 109.16430 * 301.94754 * 12 11 9 42 42 H 1.08998 * 109.96531 * 210.99842 * 15 13 12 43 43 H 1.09002 * 109.96280 * 332.24742 * 15 13 12 44 44 H 0.97005 * 120.00438 * 180.02562 * 20 19 17 45 45 H 1.09006 * 110.50764 * 141.99199 * 25 16 15 46 46 H 1.08998 * 110.51378 * 264.56697 * 25 16 15 47 47 H 1.09007 * 109.06456 * 304.59212 * 28 26 25 48 48 H 1.08990 * 108.98836 * 185.75995 * 28 26 25 49 49 H 0.96703 * 114.00193 * 89.99592 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.2355 -0.0247 0.0016 6 6 5.7097 -0.0812 0.0017 7 8 6.2769 -1.1567 0.0021 8 7 6.4278 1.0593 0.0012 9 6 7.8917 1.0033 0.0018 10 1 8.2276 0.1490 -0.5861 11 6 8.4044 0.8752 1.4411 12 6 9.9223 0.7243 1.4003 13 6 10.5817 1.9632 0.7907 14 1 10.5713 2.8114 1.4753 15 6 12.0231 1.5426 0.3925 16 7 11.9658 1.0829 -1.0044 17 6 13.0239 0.6078 -1.7322 18 1 12.8781 0.2940 -2.7553 19 6 14.2839 0.5292 -1.1551 20 7 14.4617 0.9119 0.0916 21 14 15.7274 -0.1183 -2.1482 22 1 15.9324 0.7412 -3.3417 23 1 16.9529 -0.1005 -1.3096 24 1 15.4447 -1.5098 -2.5829 25 6 10.5770 1.2195 -1.4917 26 6 9.9652 2.2982 -0.5801 27 1 10.3152 3.2793 -0.9007 28 6 8.4579 2.2928 -0.5918 29 6 3.4758 -1.2040 0.0016 30 8 4.0993 -2.4062 0.0031 31 7 2.1546 -1.1488 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6411 2.1376 0.0004 36 1 4.1223 2.1346 0.0046 37 1 5.9753 1.9174 0.0012 38 1 8.1395 1.7690 2.0060 39 1 7.9610 -0.0021 1.9120 40 1 10.2953 0.5830 2.4147 41 1 10.1791 -0.1491 0.8007 42 1 12.6963 2.3957 0.4762 43 1 12.3659 0.7330 1.0369 44 1 15.3422 0.8574 0.4949 45 1 10.5676 1.5478 -2.5311 46 1 10.0403 0.2769 -1.3850 47 1 8.1094 2.3938 -1.6197 48 1 8.0957 3.1405 -0.0104 49 1 4.2794 -2.7547 0.8870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980180131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:22 Heat of formation + Delta-G solvation = -48.091580 kcal Electronic energy + Delta-G solvation = -30398.754130 eV Core-core repulsion = 26325.133421 eV Total energy + Delta-G solvation = -4073.620709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.97929 -41.08981 -39.83863 -38.26965 -36.93803 -35.14685 -34.17805 -33.15804 -32.59592 -32.15709 -30.60951 -28.89616 -27.60168 -26.69457 -24.55886 -24.04513 -23.57311 -22.93519 -21.88459 -21.47290 -19.96490 -19.60128 -18.99766 -18.37681 -18.10145 -17.08788 -16.85248 -16.76337 -16.34047 -15.87041 -15.66347 -15.47242 -15.21191 -15.04139 -14.86484 -14.78938 -14.26348 -14.03528 -13.96412 -13.69539 -13.58019 -13.24055 -13.14698 -13.08919 -12.96037 -12.86339 -12.67727 -12.62194 -12.48058 -12.23796 -12.14256 -11.79798 -11.75781 -11.37842 -11.16857 -11.02426 -11.00265 -10.88871 -10.68225 -10.44201 -10.08831 -9.78046 -8.86685 -7.84705 -5.19384 -0.47331 0.09951 1.42544 1.46368 1.52435 1.80458 2.02367 2.48375 2.48743 2.74305 3.32123 3.47880 3.64446 3.67749 3.69806 3.76646 3.77502 3.94477 4.03992 4.17182 4.21980 4.30940 4.38468 4.44486 4.53301 4.57193 4.63735 4.69468 4.74305 4.80208 4.82156 4.92188 4.92437 5.03144 5.06378 5.12639 5.15647 5.18173 5.25478 5.34521 5.43133 5.47173 5.51701 5.54192 5.56414 5.75889 5.82277 6.20530 6.48349 6.57869 6.84844 7.11325 7.23763 7.78967 8.44092 9.25011 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.002142 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.032717 B =13070.064763 C =13465.393015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.163 3.837 3 C -0.178 4.178 4 C -0.015 4.015 5 C -0.227 4.227 6 C 0.558 3.442 7 O -0.566 6.566 8 N -0.700 5.700 9 C 0.151 3.849 10 H 0.054 0.946 11 C -0.110 4.110 12 C -0.097 4.097 13 C -0.095 4.095 14 H 0.104 0.896 15 C 0.190 3.810 16 N -0.628 5.628 17 C -0.243 4.243 18 H 0.077 0.923 19 C -0.068 4.068 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.132 3.868 26 C -0.076 4.076 27 H 0.078 0.922 28 C -0.096 4.096 29 C 0.349 3.651 30 O -0.485 6.485 31 N -0.540 5.540 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.190 0.810 36 H 0.182 0.818 37 H 0.416 0.584 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.003 0.997 43 H 0.006 0.994 44 H 0.246 0.754 45 H 0.038 0.962 46 H 0.012 0.988 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.510 8.645 4.070 32.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.025 3.975 3 C -0.197 4.197 4 C -0.041 4.041 5 C -0.234 4.234 6 C 0.346 3.654 7 O -0.445 6.445 8 N -0.353 5.353 9 C 0.046 3.954 10 H 0.073 0.927 11 C -0.149 4.149 12 C -0.136 4.136 13 C -0.114 4.114 14 H 0.122 0.878 15 C 0.065 3.935 16 N -0.355 5.355 17 C -0.372 4.372 18 H 0.095 0.905 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.201 1.201 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.007 3.993 26 C -0.096 4.096 27 H 0.096 0.904 28 C -0.135 4.135 29 C 0.170 3.830 30 O -0.294 6.294 31 N -0.261 5.261 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.207 0.793 36 H 0.199 0.801 37 H 0.255 0.745 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.030 0.970 47 H 0.099 0.901 48 H 0.125 0.875 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -31.303 7.084 3.484 32.283 hybrid contribution 2.103 -0.312 -0.004 2.126 sum -29.200 6.772 3.480 30.176 Atomic orbital electron populations 1.20968 0.85861 1.04971 1.04708 1.22031 0.98726 0.87201 0.89556 1.22380 0.94171 1.00527 1.02649 1.22168 0.95283 0.96719 0.89908 1.21037 0.93590 0.95656 1.13140 1.18191 0.86827 0.84263 0.76168 1.90834 1.72723 1.30353 1.50625 1.45695 1.06446 1.08607 1.74511 1.20853 0.78591 0.99280 0.96690 0.92741 1.21772 0.94199 1.02443 0.96437 1.21322 0.95229 0.97018 0.99999 1.22379 0.94623 0.97901 0.96525 0.87789 1.21248 0.92449 0.95379 0.84452 1.44884 1.04367 1.75244 1.10970 1.19415 0.87655 1.34799 0.95369 0.90509 1.25644 1.00174 1.02620 0.97694 1.70181 1.21886 1.54394 1.13476 0.85166 0.78453 0.78238 0.77569 1.20078 1.21835 1.20748 1.21696 0.84827 0.96148 0.96628 1.21255 0.94913 0.98707 0.94686 0.90381 1.21082 0.92938 0.96811 1.02623 1.19418 0.86720 0.85303 0.91581 1.84677 1.76774 1.32958 1.35000 1.67160 1.09106 1.32542 1.17323 0.88404 0.87115 0.91182 0.79318 0.80101 0.74535 0.88754 0.93276 0.92168 0.95409 0.97860 0.97552 0.94465 0.94406 0.96988 0.90114 0.87478 0.72439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 71.24 0.72 0.08 16 2 C 0.16 2.12 6.78 42.58 0.29 2.41 16 3 C -0.18 -1.33 9.71 22.32 0.22 -1.12 16 4 C -0.02 -0.15 9.64 22.72 0.22 0.07 16 5 C -0.23 -4.55 5.90 -19.91 -0.12 -4.67 16 6 C 0.56 14.09 7.75 86.69 0.67 14.76 16 7 O -0.57 -20.13 14.86 16.83 0.25 -19.88 16 8 N -0.70 -13.09 5.05 -445.46 -2.25 -15.34 16 9 C 0.15 3.75 2.29 45.05 0.10 3.85 16 10 H 0.05 1.87 6.26 -2.39 -0.01 1.85 16 11 C -0.11 -2.83 5.53 30.57 0.17 -2.66 16 12 C -0.10 -3.30 4.63 30.46 0.14 -3.16 16 13 C -0.10 -3.34 3.61 -9.65 -0.03 -3.38 16 14 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 15 C 0.19 9.56 4.66 87.06 0.41 9.97 16 16 N -0.63 -33.63 3.41 -690.54 -2.35 -35.99 16 17 C -0.24 -14.32 10.28 84.03 0.86 -13.46 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 20 N -0.95 -59.10 10.32 21.65 0.22 -58.88 16 21 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 22 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 24 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 25 C 0.13 5.56 6.18 86.43 0.53 6.09 16 26 C -0.08 -2.38 2.81 -10.89 -0.03 -2.41 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 C -0.10 -2.03 4.85 29.80 0.14 -1.88 16 29 C 0.35 8.46 7.77 85.13 0.66 9.12 16 30 O -0.48 -13.27 11.66 -66.40 -0.77 -14.04 16 31 N -0.54 -11.63 10.28 -296.06 -3.04 -14.67 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.11 0.01 8.07 -2.39 -0.02 -0.01 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.19 -0.24 8.06 -2.91 -0.02 -0.27 16 36 H 0.18 0.29 6.52 -2.91 -0.02 0.27 16 37 H 0.42 3.92 6.71 -92.70 -0.62 3.29 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.03 1.16 7.16 -2.38 -0.02 1.14 16 42 H 0.00 0.18 7.51 -2.39 -0.02 0.16 16 43 H 0.01 0.36 6.99 -2.39 -0.02 0.34 16 44 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 45 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.01 0.55 6.17 -2.39 -0.01 0.53 16 47 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.41 8.22 9.06 -74.05 -0.67 7.55 16 Total: -1.00 -87.26 384.54 -0.80 -88.06 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -0.30 Total: 11.00 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.43 Total: 10.01 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -7.42 Total: -124.88 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.52 Total: -33.93 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -87.26 -0.80 -88.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980180131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.967 kcal (2) G-P(sol) polarization free energy of solvation -87.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds