Wall clock time and date at job start Wed Apr 1 2020 04:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35684 * 116.99884 * 2 1 4 4 C 1.38895 * 119.62059 * 180.25868 * 3 2 1 5 5 C 1.39573 * 118.94535 * 180.29289 * 4 3 2 6 6 C 1.48155 * 120.89322 * 179.73113 * 5 4 3 7 7 O 1.21514 * 120.00028 * 179.71950 * 6 5 4 8 8 N 1.34778 * 120.00099 * 359.72162 * 6 5 4 9 9 C 1.46498 * 120.00049 * 180.02562 * 8 6 5 10 10 C 1.53580 * 112.24255 * 300.34968 * 9 8 6 11 11 C 1.54220 * 106.67799 * 238.82755 * 10 9 8 12 12 C 1.56749 * 104.50816 * 335.25477 * 11 10 9 13 13 C 1.54767 * 102.29477 * 37.30099 * 12 11 10 14 14 H 1.09001 * 111.86329 * 85.86579 * 13 12 11 15 15 N 1.46975 * 108.69354 * 209.81224 * 13 12 11 16 16 C 1.36935 * 125.57614 * 295.05573 * 15 13 12 17 17 H 1.08000 * 120.00641 * 19.42691 * 16 15 13 18 18 C 1.38818 * 119.99634 * 199.43509 * 16 15 13 19 19 N 1.31613 * 120.00362 * 28.33594 * 18 16 15 20 20 Si 1.86801 * 119.99804 * 208.61240 * 18 16 15 21 21 H 1.48504 * 109.47216 * 179.72047 * 20 18 16 22 22 H 1.48502 * 109.47439 * 299.72663 * 20 18 16 23 23 H 1.48501 * 109.47180 * 59.72486 * 20 18 16 24 24 C 1.47371 * 108.84220 * 115.31201 * 15 13 12 25 25 C 1.54910 * 112.33343 * 64.35729 * 9 8 6 26 26 C 1.39973 * 118.21481 * 359.45692 * 5 4 3 27 27 C 1.37972 * 119.13361 * 0.27936 * 26 5 4 28 28 C 1.50699 * 119.51120 * 180.02562 * 27 26 5 29 29 N 1.31914 * 120.98091 * 359.97438 * 27 26 5 30 30 H 1.08997 * 109.47512 * 300.00003 * 1 2 3 31 31 H 1.09004 * 109.47500 * 60.00335 * 1 2 3 32 32 H 1.08999 * 109.47483 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.52673 * 0.05043 * 4 3 2 34 34 H 0.96998 * 119.99752 * 0.02562 * 8 6 5 35 35 H 1.09003 * 110.02041 * 358.13384 * 10 9 8 36 36 H 1.08999 * 110.01724 * 119.48188 * 10 9 8 37 37 H 1.08999 * 110.49353 * 93.72782 * 11 10 9 38 38 H 1.09002 * 110.49915 * 216.25757 * 11 10 9 39 39 H 1.09006 * 111.09244 * 279.18492 * 12 11 10 40 40 H 1.09004 * 111.11493 * 155.43578 * 12 11 10 41 41 H 0.97000 * 120.00062 * 5.97107 * 19 18 16 42 42 H 1.08994 * 110.36257 * 93.92123 * 24 15 13 43 43 H 1.08993 * 110.36839 * 216.24791 * 24 15 13 44 44 H 1.09000 * 110.97164 * 204.32679 * 25 9 8 45 45 H 1.09000 * 110.97170 * 328.05770 * 25 9 8 46 46 H 1.07995 * 120.43148 * 180.29378 * 26 5 4 47 47 H 1.09004 * 109.47610 * 89.99353 * 28 27 26 48 48 H 1.09000 * 109.47222 * 209.99887 * 28 27 26 49 49 H 1.08996 * 109.47060 * 329.99956 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0055 5 6 4.0514 2.5235 0.0009 6 6 5.5283 2.6415 0.0014 7 8 6.0501 3.7389 0.0018 8 7 6.2930 1.5317 0.0014 9 6 7.7533 1.6484 0.0025 10 6 8.2765 2.4112 -1.2235 11 6 9.2316 1.4545 -1.9657 12 6 9.7273 0.4593 -0.8608 13 6 8.4573 0.2659 0.0023 14 1 7.8129 -0.5189 -0.3939 15 7 8.8663 -0.0104 1.3867 16 6 9.5547 -1.1165 1.8084 17 1 10.1104 -1.7102 1.0978 18 6 9.5380 -1.4748 3.1495 19 7 8.5030 -1.1641 3.9009 20 14 10.9879 -2.3911 3.8895 21 1 10.7282 -2.6488 5.3288 22 1 11.1711 -3.6830 3.1804 23 1 12.2170 -1.5699 3.7476 24 6 8.4089 1.0948 2.2477 25 6 8.2898 2.3128 1.2950 26 6 3.2394 3.6636 0.0008 27 6 1.8681 3.5116 0.0004 28 6 0.9858 4.7332 -0.0003 29 7 1.3178 2.3127 -0.0004 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 4.0230 0.3683 -0.0105 34 1 5.8764 0.6557 0.0007 35 1 7.4461 2.6878 -1.8732 36 1 8.8146 3.3042 -0.9056 37 1 8.6983 0.9131 -2.7471 38 1 10.0708 2.0060 -2.3897 39 1 10.5312 0.8981 -0.2697 40 1 10.0431 -0.4878 -1.2985 41 1 7.7160 -0.7627 3.5004 42 1 7.4399 0.8574 2.6868 43 1 9.1417 1.2951 3.0292 44 1 9.2624 2.7734 1.1220 45 1 7.5785 3.0419 1.6830 46 1 3.6805 4.6493 0.0008 47 1 0.7734 5.0276 -1.0281 48 1 0.0514 4.5069 0.5133 49 1 1.4943 5.5490 0.5135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992120811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:44 Heat of formation + Delta-G solvation = -33.501588 kcal Electronic energy + Delta-G solvation = -31150.653533 eV Core-core repulsion = 27077.665494 eV Total energy + Delta-G solvation = -4072.988039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20499 -41.45275 -39.80704 -38.85766 -36.30914 -35.18775 -34.09267 -33.36186 -32.86296 -31.46251 -29.34501 -28.29756 -28.01509 -27.44704 -25.72713 -25.28343 -23.83996 -22.63986 -21.74790 -21.17066 -20.40588 -19.59840 -19.33579 -18.24027 -17.82044 -17.21900 -17.17700 -16.75810 -16.74863 -16.10107 -15.82261 -15.60624 -15.33029 -15.23635 -15.18150 -14.95205 -14.76710 -14.43017 -14.14890 -13.61049 -13.40433 -13.37426 -13.21982 -13.18931 -13.06349 -12.70998 -12.68539 -12.44017 -12.28463 -12.09393 -12.01329 -11.94177 -11.88437 -11.69587 -11.54361 -11.36623 -11.31877 -11.05015 -10.79823 -10.47414 -10.16251 -9.58467 -8.99457 -8.29056 -5.32886 -0.50804 -0.02892 1.57573 1.65533 1.67562 1.80023 1.83764 2.01469 2.61787 2.64243 3.03492 3.14660 3.23155 3.44393 3.49669 3.74399 3.76992 3.83247 3.86191 3.96683 4.21225 4.23398 4.31933 4.33963 4.38934 4.40610 4.42327 4.50766 4.51838 4.67479 4.72253 4.75342 4.77602 4.78427 4.83929 4.92156 4.93537 5.01801 5.02283 5.06579 5.13928 5.22795 5.27444 5.33317 5.48845 5.52547 5.74352 6.09035 6.30304 6.34037 6.63950 6.89917 6.96100 7.71514 8.31285 9.01183 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.003167 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.600787 B = 8839.630425 C =10034.346487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.314 3.686 4 C -0.174 4.174 5 C -0.055 4.055 6 C 0.562 3.438 7 O -0.545 6.545 8 N -0.696 5.696 9 C 0.169 3.831 10 C -0.103 4.103 11 C -0.110 4.110 12 C -0.121 4.121 13 C 0.151 3.849 14 H 0.044 0.956 15 N -0.609 5.609 16 C -0.335 4.335 17 H 0.063 0.937 18 C -0.079 4.079 19 N -0.944 5.944 20 Si 1.112 2.888 21 H -0.296 1.296 22 H -0.273 1.273 23 H -0.282 1.282 24 C 0.154 3.846 25 C -0.119 4.119 26 C -0.157 4.157 27 C 0.164 3.836 28 C -0.101 4.101 29 N -0.531 5.531 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.406 0.594 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.253 0.747 42 H -0.001 1.001 43 H 0.017 0.983 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.159 0.841 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 9.301 -13.028 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.135 3.865 4 C -0.196 4.196 5 C -0.066 4.066 6 C 0.349 3.651 7 O -0.423 6.423 8 N -0.346 5.346 9 C 0.083 3.917 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.161 4.161 13 C 0.044 3.956 14 H 0.062 0.938 15 N -0.335 5.335 16 C -0.464 4.464 17 H 0.081 0.919 18 C -0.275 4.275 19 N -0.587 5.587 20 Si 0.937 3.063 21 H -0.222 1.222 22 H -0.199 1.199 23 H -0.209 1.209 24 C 0.028 3.972 25 C -0.158 4.158 26 C -0.178 4.178 27 C 0.027 3.973 28 C -0.158 4.158 29 N -0.257 5.257 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.243 0.757 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.036 0.964 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.177 0.823 47 H 0.117 0.883 48 H 0.103 0.897 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.044 9.001 -11.595 20.315 hybrid contribution -0.261 -0.160 -0.803 0.859 sum -14.305 8.841 -12.398 20.892 Atomic orbital electron populations 1.23113 0.75334 1.04813 1.02585 1.86265 1.24835 1.23873 1.87597 1.19719 0.89047 0.85246 0.92456 1.21267 0.92889 0.98636 1.06766 1.20124 0.92964 0.93991 0.99500 1.18223 0.86318 0.84260 0.76269 1.90742 1.74563 1.26763 1.50270 1.45847 1.06195 1.09104 1.73448 1.21549 0.78466 0.95760 0.95938 1.22186 0.99243 0.98068 0.94670 1.22636 0.98907 0.96320 0.96886 1.23076 0.97159 0.99245 0.96579 1.22069 0.94592 0.92610 0.86310 0.93821 1.44754 1.65684 1.19724 1.03299 1.19921 1.25162 1.05645 0.95645 0.91889 1.27063 1.03571 1.01794 0.95068 1.70901 1.04066 1.43774 1.39942 0.82884 0.72900 0.75471 0.75013 1.22205 1.19874 1.20870 1.21381 0.95327 0.87451 0.93045 1.23043 1.01138 0.96345 0.95316 1.22101 0.93640 0.99711 1.02362 1.21496 0.91833 0.92638 0.91298 1.20881 0.98687 0.91394 1.04804 1.67095 1.41150 0.98690 1.18802 0.92282 0.91821 0.86086 0.83365 0.75729 0.91322 0.90829 0.90447 0.89694 0.92421 0.91830 0.93698 0.98283 0.96431 0.89943 0.91207 0.82290 0.88302 0.89721 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 113.37 1.18 1.76 16 2 O -0.32 -7.65 10.47 -90.02 -0.94 -8.59 16 3 C 0.31 8.03 7.49 84.80 0.63 8.66 16 4 C -0.17 -4.53 9.55 22.75 0.22 -4.32 16 5 C -0.06 -1.49 5.91 -19.90 -0.12 -1.61 16 6 C 0.56 17.40 6.95 86.88 0.60 18.01 16 7 O -0.55 -18.92 14.32 -3.76 -0.05 -18.97 16 8 N -0.70 -21.86 5.19 -418.34 -2.17 -24.03 16 9 C 0.17 5.80 0.73 5.19 0.00 5.80 16 10 C -0.10 -2.97 5.25 31.20 0.16 -2.81 16 11 C -0.11 -2.82 6.88 32.32 0.22 -2.60 16 12 C -0.12 -4.09 6.38 32.51 0.21 -3.88 16 13 C 0.15 5.90 3.59 46.24 0.17 6.07 16 14 H 0.04 1.75 7.98 -2.39 -0.02 1.73 16 15 N -0.61 -30.14 2.91 -663.28 -1.93 -32.07 16 16 C -0.34 -18.54 9.71 84.04 0.82 -17.73 16 17 H 0.06 3.44 7.97 -2.91 -0.02 3.41 16 18 C -0.08 -4.51 5.08 84.86 0.43 -4.08 16 19 N -0.94 -58.43 12.99 21.65 0.28 -58.15 16 20 Si 1.11 51.38 30.00 68.60 2.06 53.44 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 C 0.15 7.47 5.36 86.93 0.47 7.94 16 25 C -0.12 -4.65 5.80 31.96 0.19 -4.46 16 26 C -0.16 -3.63 9.30 22.63 0.21 -3.42 16 27 C 0.16 3.36 6.77 42.48 0.29 3.65 16 28 C -0.10 -1.21 10.16 71.24 0.72 -0.49 16 29 N -0.53 -12.44 9.09 -297.18 -2.70 -15.14 16 30 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.06 0.96 8.10 -2.38 -0.02 0.94 16 32 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.15 3.63 6.53 -2.91 -0.02 3.61 16 34 H 0.41 12.01 6.63 -92.71 -0.61 11.40 16 35 H 0.07 1.93 7.40 -2.39 -0.02 1.91 16 36 H 0.07 2.14 7.41 -2.39 -0.02 2.12 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 2.16 8.09 -2.38 -0.02 2.14 16 40 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.25 15.96 6.19 -92.71 -0.57 15.38 16 42 H 0.00 -0.03 6.83 -2.39 -0.02 -0.05 16 43 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 44 H 0.08 3.08 7.65 -2.39 -0.02 3.06 16 45 H 0.07 2.74 6.82 -2.39 -0.02 2.72 16 46 H 0.16 3.33 7.74 -2.91 -0.02 3.31 16 47 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 Total: -1.00 -71.19 390.00 1.49 -69.70 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.55 Total: 27.31 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.40 Total: 6.49 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -6.52 Total: -129.39 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.00 Total: -27.56 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.06 Total: 53.44 kcal Total: -71.19 1.49 -69.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992120811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.202 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds