Wall clock time and date at job start Wed Apr 1 2020 04:23:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35425 * 116.99983 * 2 1
4 4 N 1.32240 * 119.80311 * 0.02959 * 3 2 1
5 5 C 1.31873 * 121.80138 * 179.97438 * 4 3 2
6 6 C 1.50704 * 119.40523 * 179.97438 * 5 4 3
7 7 C 1.38359 * 121.19017 * 359.97438 * 5 4 3
8 8 C 1.38336 * 119.45285 * 359.74721 * 7 5 4
9 9 C 1.39986 * 118.35293 * 0.49865 * 8 7 5
10 10 C 1.47515 * 120.59952 * 179.78293 * 9 8 7
11 11 O 1.21596 * 120.00124 * 179.71998 * 10 9 8
12 12 N 1.34775 * 120.00224 * 359.71544 * 10 9 8
13 13 C 1.46497 * 120.00134 * 179.72528 * 12 10 9
14 14 C 1.53583 * 112.24154 * 62.63775 * 13 12 10
15 15 C 1.55464 * 106.06053 * 121.83430 * 14 13 12
16 16 C 1.54757 * 104.36503 * 24.63791 * 15 14 13
17 17 C 1.54773 * 103.21197 * 322.32233 * 16 15 14
18 18 H 1.09002 * 112.61479 * 274.66052 * 17 16 15
19 19 N 1.46981 * 108.69042 * 150.19926 * 17 16 15
20 20 C 1.36943 * 125.57399 * 65.85893 * 19 17 16
21 21 H 1.07991 * 120.00349 * 348.76960 * 20 19 17
22 22 C 1.38817 * 119.99533 * 168.77303 * 20 19 17
23 23 N 1.31620 * 119.99978 * 350.06256 * 22 20 19
24 24 Si 1.86800 * 119.99862 * 170.06586 * 22 20 19
25 25 H 1.48501 * 109.47058 * 94.42432 * 24 22 20
26 26 H 1.48505 * 109.46839 * 214.42298 * 24 22 20
27 27 H 1.48500 * 109.47082 * 334.42270 * 24 22 20
28 28 C 1.47364 * 108.84315 * 245.86444 * 19 17 16
29 29 C 1.54865 * 104.82150 * 24.69335 * 28 19 17
30 30 H 1.08999 * 109.47097 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46977 * 299.99827 * 1 2 3
32 32 H 1.09003 * 109.47254 * 59.99373 * 1 2 3
33 33 H 1.09004 * 109.46794 * 90.00178 * 6 5 4
34 34 H 1.08997 * 109.47221 * 209.99618 * 6 5 4
35 35 H 1.08996 * 109.47231 * 330.00102 * 6 5 4
36 36 H 1.07993 * 120.27275 * 180.02562 * 7 5 4
37 37 H 1.08002 * 120.82481 * 180.25316 * 8 7 5
38 38 H 0.96999 * 119.99772 * 0.02562 * 12 10 9
39 39 H 1.08999 * 110.01273 * 240.46667 * 14 13 12
40 40 H 1.09001 * 110.01662 * 1.85254 * 14 13 12
41 41 H 1.09001 * 110.27833 * 265.95335 * 15 14 13
42 42 H 1.08998 * 110.61710 * 143.48718 * 15 14 13
43 43 H 1.09000 * 110.66784 * 203.89418 * 16 15 14
44 44 H 1.08994 * 110.66745 * 80.75087 * 16 15 14
45 45 H 0.96998 * 120.00217 * 180.02562 * 23 22 20
46 46 H 1.09005 * 110.36676 * 265.85732 * 28 19 17
47 47 H 1.08996 * 110.36941 * 143.53269 * 28 19 17
48 48 H 1.09003 * 110.96740 * 204.81731 * 29 28 19
49 49 H 1.08991 * 110.97060 * 81.04444 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0438 1.2066 0.0000
4 7 1.3198 2.3132 0.0006
5 6 1.8771 3.5084 0.0011
6 6 1.0000 4.7339 0.0012
7 6 3.2526 3.6575 0.0016
8 6 4.0587 2.5333 0.0068
9 6 3.4450 1.2752 0.0008
10 6 4.2570 0.0436 0.0012
11 8 3.7125 -1.0436 0.0010
12 7 5.6023 0.1234 0.0016
13 6 6.4087 -1.0997 0.0080
14 6 6.1839 -1.9508 -1.2505
15 6 7.5782 -2.1038 -1.9209
16 6 8.5849 -1.9133 -0.7611
17 6 7.9293 -0.8054 0.0980
18 1 8.1713 0.1971 -0.2550
19 7 8.3245 -1.0008 1.5002
20 6 9.5957 -0.8777 1.9942
21 1 10.4328 -0.7969 1.3167
22 6 9.8083 -0.8570 3.3658
23 7 8.7859 -0.7582 4.1888
24 14 11.5454 -0.9692 4.0435
25 1 12.0713 0.3982 4.2865
26 1 11.5306 -1.7280 5.3200
27 1 12.4152 -1.6671 3.0629
28 6 7.1288 -1.3509 2.2873
29 6 6.1472 -1.9706 1.2622
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8899
33 1 0.7882 5.0290 1.0289
34 1 1.5124 5.5475 -0.5122
35 1 0.0650 4.5115 -0.5130
36 1 3.6933 4.6434 0.0024
37 1 5.1349 2.6240 0.0114
38 1 6.0367 0.9907 0.0020
39 1 5.7988 -2.9321 -0.9733
40 1 5.4839 -1.4502 -1.9194
41 1 7.7193 -1.3336 -2.6792
42 1 7.6859 -3.0952 -2.3608
43 1 9.5519 -1.5838 -1.1412
44 1 8.6892 -2.8340 -0.1871
45 1 8.9344 -0.7433 5.1472
46 1 6.6948 -0.4572 2.7358
47 1 7.3819 -2.0787 3.0582
48 1 5.1156 -1.8690 1.5993
49 1 6.3922 -3.0151 1.0698
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000992298959.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:23:09
Heat of formation + Delta-G solvation = -6.592872 kcal
Electronic energy + Delta-G solvation = -31451.747465 eV
Core-core repulsion = 27379.926275 eV
Total energy + Delta-G solvation = -4071.821190 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-41.04541 -39.85540 -38.11909 -37.81927 -34.18642 -33.73220 -32.85294 -31.91353
-31.37948 -29.74616 -28.57273 -27.11923 -26.67486 -25.80962 -23.79941 -23.29920
-23.00933 -21.29012 -20.00361 -19.76981 -18.78765 -18.30624 -17.33343 -17.00097
-16.73627 -16.17708 -15.51140 -14.95062 -14.86993 -14.56733 -14.53430 -14.30398
-14.27385 -13.93839 -13.52010 -13.40506 -12.98376 -12.83266 -12.73719 -12.55198
-12.44509 -12.12106 -11.83524 -11.78725 -11.64587 -11.17983 -11.16566 -11.02408
-10.75083 -10.65313 -10.51134 -10.17771 -10.15357 -10.04432 -9.98821 -9.84776
-9.73742 -9.62441 -9.26693 -8.63867 -8.57124 -8.40334 -6.79438 -5.73552
-3.07214 0.58292 1.11155 2.97573 3.01841 3.38317 3.40028 3.45661
3.47335 3.80296 3.95550 4.45771 4.49100 4.71422 4.79522 4.96164
4.99440 5.17162 5.17726 5.22166 5.24992 5.26638 5.27337 5.36368
5.52388 5.52419 5.65745 5.68290 5.71351 5.82868 5.87948 5.88972
6.01745 6.09205 6.17285 6.19939 6.31087 6.38066 6.44413 6.56185
6.61985 6.80312 6.82508 7.01970 7.13784 7.18412 7.55583 7.61230
7.64536 7.80693 7.90066 8.26743 8.59217 9.19784 9.82258 10.50003
11.38737
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013401 B = 0.003155 C = 0.002876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2088.955335 B = 8872.327567 C = 9733.126720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.268 6.268
3 C 0.375 3.625
4 N -0.548 5.548
5 C 0.187 3.813
6 C -0.107 4.107
7 C -0.220 4.220
8 C -0.005 4.005
9 C -0.209 4.209
10 C 0.563 3.437
11 O -0.514 6.514
12 N -0.703 5.703
13 C 0.164 3.836
14 C -0.111 4.111
15 C -0.124 4.124
16 C -0.128 4.128
17 C 0.162 3.838
18 H 0.046 0.954
19 N -0.594 5.594
20 C -0.228 4.228
21 H 0.075 0.925
22 C -0.006 4.006
23 N -0.915 5.915
24 Si 0.908 3.092
25 H -0.290 1.290
26 H -0.291 1.291
27 H -0.281 1.281
28 C 0.175 3.825
29 C -0.145 4.145
30 H 0.097 0.903
31 H 0.058 0.942
32 H 0.057 0.943
33 H 0.083 0.917
34 H 0.080 0.920
35 H 0.078 0.922
36 H 0.142 0.858
37 H 0.146 0.854
38 H 0.395 0.605
39 H 0.070 0.930
40 H 0.060 0.940
41 H 0.057 0.943
42 H 0.058 0.942
43 H 0.058 0.942
44 H 0.074 0.926
45 H 0.252 0.748
46 H 0.024 0.976
47 H 0.066 0.934
48 H 0.071 0.929
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.234 8.308 -11.457 20.072
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.171 6.171
3 C 0.195 3.805
4 N -0.274 5.274
5 C 0.050 3.950
6 C -0.164 4.164
7 C -0.240 4.240
8 C -0.030 4.030
9 C -0.216 4.216
10 C 0.349 3.651
11 O -0.391 6.391
12 N -0.354 5.354
13 C 0.078 3.922
14 C -0.150 4.150
15 C -0.162 4.162
16 C -0.168 4.168
17 C 0.054 3.946
18 H 0.064 0.936
19 N -0.319 5.319
20 C -0.356 4.356
21 H 0.093 0.907
22 C -0.202 4.202
23 N -0.561 5.561
24 Si 0.738 3.262
25 H -0.217 1.217
26 H -0.217 1.217
27 H -0.206 1.206
28 C 0.051 3.949
29 C -0.184 4.184
30 H 0.115 0.885
31 H 0.076 0.924
32 H 0.075 0.925
33 H 0.102 0.898
34 H 0.099 0.901
35 H 0.097 0.903
36 H 0.160 0.840
37 H 0.164 0.836
38 H 0.230 0.770
39 H 0.088 0.912
40 H 0.079 0.921
41 H 0.076 0.924
42 H 0.077 0.923
43 H 0.077 0.923
44 H 0.092 0.908
45 H 0.062 0.938
46 H 0.042 0.958
47 H 0.084 0.916
48 H 0.089 0.911
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -15.329 7.134 -11.211 20.287
hybrid contribution 1.784 0.717 0.561 2.003
sum -13.545 7.851 -10.650 18.935
Atomic orbital electron populations
1.22926 0.77836 1.03168 1.02061 1.86562 1.22051 1.22881 1.85648
1.19795 0.88116 0.84866 0.87723 1.67248 1.40350 0.98218 1.21552
1.21136 0.92155 0.91943 0.89794 1.20804 0.99289 0.92811 1.03527
1.21720 0.93802 0.99978 1.08504 1.21693 1.00799 0.90526 0.90010
1.20130 0.91611 0.95311 1.14515 1.17656 0.82027 0.88117 0.77276
1.90804 1.71628 1.28071 1.48552 1.45778 1.05200 1.09531 1.74861
1.21615 0.90621 0.84192 0.95793 1.22493 0.96660 0.99959 0.95887
1.22566 0.95116 1.00642 0.97884 1.22905 0.97369 1.00641 0.95929
1.21781 0.89136 0.95858 0.87848 0.93625 1.44510 1.04799 1.80860
1.01681 1.18968 0.82584 1.43807 0.90240 0.90699 1.24830 0.97259
1.02012 0.96149 1.69978 1.28409 1.55650 1.02109 0.86176 0.84016
0.77502 0.78473 1.21725 1.21698 1.20604 1.21388 0.84406 0.97328
0.91824 1.23338 1.00766 0.98246 0.96043 0.88456 0.92372 0.92469
0.89831 0.90149 0.90310 0.83970 0.83612 0.76962 0.91175 0.92142
0.92406 0.92280 0.92311 0.90761 0.93769 0.95777 0.91582 0.91078
0.91431
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.39 10.38 101.05 1.05 1.44 16
2 O -0.27 -4.16 8.58 -39.74 -0.34 -4.50 16
3 C 0.38 5.63 7.51 -16.61 -0.12 5.51 16
4 N -0.55 -7.09 9.11 -9.21 -0.08 -7.18 16
5 C 0.19 1.96 6.78 -82.53 -0.56 1.40 16
6 C -0.11 -0.71 10.16 36.01 0.37 -0.34 16
7 C -0.22 -2.14 9.71 -39.50 -0.38 -2.52 16
8 C 0.00 -0.05 9.64 -38.89 -0.37 -0.43 16
9 C -0.21 -3.11 5.90 -104.69 -0.62 -3.73 16
10 C 0.56 9.72 6.96 -12.48 -0.09 9.63 16
11 O -0.51 -10.31 13.00 -16.49 -0.21 -10.53 16
12 N -0.70 -11.58 5.18 -46.38 -0.24 -11.82 16
13 C 0.16 2.99 0.74 -129.37 -0.10 2.89 16
14 C -0.11 -1.83 5.42 -25.12 -0.14 -1.97 16
15 C -0.12 -1.85 6.87 -24.50 -0.17 -2.02 16
16 C -0.13 -2.29 6.22 -24.87 -0.15 -2.44 16
17 C 0.16 3.21 3.67 -65.60 -0.24 2.97 16
18 H 0.05 0.89 7.96 -51.93 -0.41 0.48 16
19 N -0.59 -14.57 3.03 -161.13 -0.49 -15.05 16
20 C -0.23 -6.12 9.96 -15.05 -0.15 -6.27 16
21 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16
22 C -0.01 -0.15 5.39 -17.43 -0.09 -0.25 16
23 N -0.91 -26.66 10.74 55.49 0.60 -26.06 16
24 Si 0.91 21.80 29.57 -169.99 -5.03 16.77 16
25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
28 C 0.18 4.31 5.41 -2.59 -0.01 4.29 16
29 C -0.14 -3.00 5.71 -24.74 -0.14 -3.14 16
30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16
31 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16
32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16
33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
34 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16
35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16
37 H 0.15 1.38 6.52 -52.49 -0.34 1.04 16
38 H 0.40 5.71 6.58 -40.82 -0.27 5.44 16
39 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16
40 H 0.06 0.99 7.60 -51.93 -0.39 0.60 16
41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
44 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16
45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
46 H 0.02 0.65 8.06 -51.93 -0.42 0.23 16
47 H 0.07 1.82 6.99 -51.93 -0.36 1.45 16
48 H 0.07 1.53 6.51 -51.93 -0.34 1.19 16
49 H 0.07 1.38 7.63 -51.93 -0.40 0.98 16
LS Contribution 387.59 15.07 5.84 5.84
Total: -1.00 -33.17 387.59 -9.39 -42.56
By element:
Atomic # 1 Polarization: 12.46 SS G_CDS: -7.50 Total: 4.96 kcal
Atomic # 6 Polarization: 6.94 SS G_CDS: -1.93 Total: 5.02 kcal
Atomic # 7 Polarization: -59.90 SS G_CDS: -0.22 Total: -60.12 kcal
Atomic # 8 Polarization: -14.48 SS G_CDS: -0.56 Total: -15.03 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -33.17 -9.39 -42.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992298959.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.969 kcal
(2) G-P(sol) polarization free energy of solvation -33.174 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.795 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds