Wall clock time and date at job start Wed Apr 1 2020 04:23:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35425 * 116.99983 * 2 1
4 4 N 1.32240 * 119.80311 * 0.02959 * 3 2 1
5 5 C 1.31873 * 121.80138 * 179.97438 * 4 3 2
6 6 C 1.50704 * 119.40523 * 179.97438 * 5 4 3
7 7 C 1.38359 * 121.19017 * 359.97438 * 5 4 3
8 8 C 1.38336 * 119.45285 * 359.74721 * 7 5 4
9 9 C 1.39986 * 118.35293 * 0.49865 * 8 7 5
10 10 C 1.47515 * 120.59952 * 179.78293 * 9 8 7
11 11 O 1.21596 * 120.00124 * 179.71998 * 10 9 8
12 12 N 1.34775 * 120.00224 * 359.71544 * 10 9 8
13 13 C 1.46497 * 120.00134 * 179.72528 * 12 10 9
14 14 C 1.53583 * 112.24154 * 62.63775 * 13 12 10
15 15 C 1.55464 * 106.06053 * 121.83430 * 14 13 12
16 16 C 1.54757 * 104.36503 * 24.63791 * 15 14 13
17 17 C 1.54773 * 103.21197 * 322.32233 * 16 15 14
18 18 H 1.09002 * 112.61479 * 274.66052 * 17 16 15
19 19 N 1.46981 * 108.69042 * 150.19926 * 17 16 15
20 20 C 1.36943 * 125.57399 * 65.85893 * 19 17 16
21 21 H 1.07991 * 120.00349 * 348.76960 * 20 19 17
22 22 C 1.38817 * 119.99533 * 168.77303 * 20 19 17
23 23 N 1.31620 * 119.99978 * 350.06256 * 22 20 19
24 24 Si 1.86800 * 119.99862 * 170.06586 * 22 20 19
25 25 H 1.48501 * 109.47058 * 94.42432 * 24 22 20
26 26 H 1.48505 * 109.46839 * 214.42298 * 24 22 20
27 27 H 1.48500 * 109.47082 * 334.42270 * 24 22 20
28 28 C 1.47364 * 108.84315 * 245.86444 * 19 17 16
29 29 C 1.54865 * 104.82150 * 24.69335 * 28 19 17
30 30 H 1.08999 * 109.47097 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46977 * 299.99827 * 1 2 3
32 32 H 1.09003 * 109.47254 * 59.99373 * 1 2 3
33 33 H 1.09004 * 109.46794 * 90.00178 * 6 5 4
34 34 H 1.08997 * 109.47221 * 209.99618 * 6 5 4
35 35 H 1.08996 * 109.47231 * 330.00102 * 6 5 4
36 36 H 1.07993 * 120.27275 * 180.02562 * 7 5 4
37 37 H 1.08002 * 120.82481 * 180.25316 * 8 7 5
38 38 H 0.96999 * 119.99772 * 0.02562 * 12 10 9
39 39 H 1.08999 * 110.01273 * 240.46667 * 14 13 12
40 40 H 1.09001 * 110.01662 * 1.85254 * 14 13 12
41 41 H 1.09001 * 110.27833 * 265.95335 * 15 14 13
42 42 H 1.08998 * 110.61710 * 143.48718 * 15 14 13
43 43 H 1.09000 * 110.66784 * 203.89418 * 16 15 14
44 44 H 1.08994 * 110.66745 * 80.75087 * 16 15 14
45 45 H 0.96998 * 120.00217 * 180.02562 * 23 22 20
46 46 H 1.09005 * 110.36676 * 265.85732 * 28 19 17
47 47 H 1.08996 * 110.36941 * 143.53269 * 28 19 17
48 48 H 1.09003 * 110.96740 * 204.81731 * 29 28 19
49 49 H 1.08991 * 110.97060 * 81.04444 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0438 1.2066 0.0000
4 7 1.3198 2.3132 0.0006
5 6 1.8771 3.5084 0.0011
6 6 1.0000 4.7339 0.0012
7 6 3.2526 3.6575 0.0016
8 6 4.0587 2.5333 0.0068
9 6 3.4450 1.2752 0.0008
10 6 4.2570 0.0436 0.0012
11 8 3.7125 -1.0436 0.0010
12 7 5.6023 0.1234 0.0016
13 6 6.4087 -1.0997 0.0080
14 6 6.1839 -1.9508 -1.2505
15 6 7.5782 -2.1038 -1.9209
16 6 8.5849 -1.9133 -0.7611
17 6 7.9293 -0.8054 0.0980
18 1 8.1713 0.1971 -0.2550
19 7 8.3245 -1.0008 1.5002
20 6 9.5957 -0.8777 1.9942
21 1 10.4328 -0.7969 1.3167
22 6 9.8083 -0.8570 3.3658
23 7 8.7859 -0.7582 4.1888
24 14 11.5454 -0.9692 4.0435
25 1 12.0713 0.3982 4.2865
26 1 11.5306 -1.7280 5.3200
27 1 12.4152 -1.6671 3.0629
28 6 7.1288 -1.3509 2.2873
29 6 6.1472 -1.9706 1.2622
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8899
33 1 0.7882 5.0290 1.0289
34 1 1.5124 5.5475 -0.5122
35 1 0.0650 4.5115 -0.5130
36 1 3.6933 4.6434 0.0024
37 1 5.1349 2.6240 0.0114
38 1 6.0367 0.9907 0.0020
39 1 5.7988 -2.9321 -0.9733
40 1 5.4839 -1.4502 -1.9194
41 1 7.7193 -1.3336 -2.6792
42 1 7.6859 -3.0952 -2.3608
43 1 9.5519 -1.5838 -1.1412
44 1 8.6892 -2.8340 -0.1871
45 1 8.9344 -0.7433 5.1472
46 1 6.6948 -0.4572 2.7358
47 1 7.3819 -2.0787 3.0582
48 1 5.1156 -1.8690 1.5993
49 1 6.3922 -3.0151 1.0698
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000992298959.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:23:08
Heat of formation + Delta-G solvation = -28.374559 kcal
Electronic energy + Delta-G solvation = -31452.691989 eV
Core-core repulsion = 27379.926275 eV
Total energy + Delta-G solvation = -4072.765715 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.10742 -41.24283 -39.26623 -39.07602 -35.98058 -34.97421 -33.97708 -33.26276
-32.75574 -31.43096 -29.41498 -28.39321 -28.18498 -27.15528 -25.69938 -24.32567
-23.89496 -22.71266 -21.65220 -21.18949 -20.21682 -19.33796 -18.83535 -18.57345
-17.80824 -17.17540 -16.96009 -16.83515 -16.09387 -16.02735 -15.60088 -15.45690
-15.19719 -15.10293 -14.92263 -14.84772 -14.51224 -14.11939 -13.82001 -13.54482
-13.53060 -13.35234 -13.16957 -13.04832 -12.90887 -12.81691 -12.68313 -12.57926
-12.30227 -12.03556 -12.02883 -11.89648 -11.71517 -11.65839 -11.47203 -11.24474
-11.07876 -10.95939 -10.65342 -10.56188 -9.97006 -9.46558 -8.82090 -7.83917
-5.19051 -0.37633 0.21111 1.47631 1.49583 1.58661 1.86938 2.03525
2.13637 2.51969 2.75448 3.11400 3.35156 3.37243 3.63216 3.70154
3.75041 3.89918 3.95693 3.97955 4.21376 4.31990 4.37287 4.38034
4.38548 4.42089 4.47588 4.59521 4.62979 4.67806 4.71565 4.80979
4.81325 4.89600 4.93697 4.96615 5.00338 5.11340 5.14923 5.17277
5.24201 5.33736 5.46471 5.47383 5.54857 5.62306 5.68609 5.75378
6.19749 6.21773 6.56163 6.74389 7.09598 7.28631 7.79311 8.46823
9.27930
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013401 B = 0.003155 C = 0.002876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2088.955335 B = 8872.327567 C = 9733.126720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.299 6.299
3 C 0.356 3.644
4 N -0.558 5.558
5 C 0.183 3.817
6 C -0.104 4.104
7 C -0.210 4.210
8 C -0.004 4.004
9 C -0.241 4.241
10 C 0.563 3.437
11 O -0.550 6.550
12 N -0.699 5.699
13 C 0.172 3.828
14 C -0.105 4.105
15 C -0.108 4.108
16 C -0.123 4.123
17 C 0.155 3.845
18 H 0.058 0.942
19 N -0.609 5.609
20 C -0.229 4.229
21 H 0.085 0.915
22 C -0.065 4.065
23 N -0.950 5.950
24 Si 0.973 3.027
25 H -0.286 1.286
26 H -0.300 1.300
27 H -0.267 1.267
28 C 0.190 3.810
29 C -0.132 4.132
30 H 0.112 0.888
31 H 0.060 0.940
32 H 0.065 0.935
33 H 0.095 0.905
34 H 0.108 0.892
35 H 0.079 0.921
36 H 0.182 0.818
37 H 0.164 0.836
38 H 0.405 0.595
39 H 0.061 0.939
40 H 0.064 0.936
41 H 0.081 0.919
42 H 0.079 0.921
43 H 0.069 0.931
44 H 0.052 0.948
45 H 0.245 0.755
46 H -0.008 1.008
47 H 0.027 0.973
48 H 0.059 0.941
49 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.800 10.423 -13.747 22.092
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.204 6.204
3 C 0.177 3.823
4 N -0.284 5.284
5 C 0.046 3.954
6 C -0.161 4.161
7 C -0.229 4.229
8 C -0.029 4.029
9 C -0.247 4.247
10 C 0.351 3.649
11 O -0.429 6.429
12 N -0.350 5.350
13 C 0.086 3.914
14 C -0.144 4.144
15 C -0.146 4.146
16 C -0.163 4.163
17 C 0.049 3.951
18 H 0.076 0.924
19 N -0.333 5.333
20 C -0.358 4.358
21 H 0.103 0.897
22 C -0.259 4.259
23 N -0.599 5.599
24 Si 0.802 3.198
25 H -0.213 1.213
26 H -0.227 1.227
27 H -0.192 1.192
28 C 0.065 3.935
29 C -0.171 4.171
30 H 0.131 0.869
31 H 0.078 0.922
32 H 0.083 0.917
33 H 0.113 0.887
34 H 0.127 0.873
35 H 0.097 0.903
36 H 0.199 0.801
37 H 0.182 0.818
38 H 0.242 0.758
39 H 0.080 0.920
40 H 0.083 0.917
41 H 0.100 0.900
42 H 0.098 0.902
43 H 0.088 0.912
44 H 0.071 0.929
45 H 0.054 0.946
46 H 0.010 0.990
47 H 0.045 0.955
48 H 0.078 0.922
49 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -14.887 9.274 -13.553 22.165
hybrid contribution 1.556 0.166 1.272 2.017
sum -13.331 9.440 -12.281 20.436
Atomic orbital electron populations
1.23101 0.76130 1.04377 1.02504 1.86508 1.24023 1.23945 1.85915
1.19998 0.88427 0.85331 0.88589 1.67338 1.40387 0.98570 1.22074
1.21956 0.93426 0.92252 0.87771 1.20947 0.98917 0.91620 1.04628
1.22164 0.93377 1.01011 1.06390 1.21974 1.01949 0.89848 0.89139
1.20054 0.91567 0.95388 1.17676 1.18046 0.82034 0.88674 0.76179
1.90770 1.72225 1.29643 1.50290 1.45690 1.05129 1.09433 1.74792
1.21478 0.89958 0.84701 0.95299 1.22424 0.97980 0.99038 0.94929
1.22499 0.92364 1.02758 0.96975 1.22773 0.98617 0.98577 0.96347
1.22044 0.90297 0.97206 0.85585 0.92406 1.44689 1.04086 1.80929
1.03627 1.19361 0.83841 1.42103 0.90542 0.89710 1.25637 1.00801
1.02754 0.96661 1.70184 1.30405 1.57534 1.01761 0.85142 0.79916
0.77341 0.77388 1.21343 1.22703 1.19164 1.21013 0.85462 0.95074
0.91964 1.23145 0.98801 0.98694 0.96504 0.86942 0.92171 0.91661
0.88659 0.87301 0.90257 0.80100 0.81848 0.75771 0.91975 0.91687
0.90011 0.90238 0.91217 0.92934 0.94618 0.98963 0.95461 0.92224
0.91251
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.75 10.38 113.37 1.18 1.92 16
2 O -0.30 -9.64 8.58 -66.38 -0.57 -10.21 16
3 C 0.36 10.81 7.51 85.13 0.64 11.45 16
4 N -0.56 -13.98 9.11 -296.05 -2.70 -16.67 16
5 C 0.18 3.39 6.78 42.58 0.29 3.68 16
6 C -0.10 -1.02 10.16 71.24 0.72 -0.29 16
7 C -0.21 -3.45 9.71 22.32 0.22 -3.23 16
8 C 0.00 -0.08 9.64 22.72 0.22 0.14 16
9 C -0.24 -7.16 5.90 -19.91 -0.12 -7.27 16
10 C 0.56 19.77 6.96 86.69 0.60 20.38 16
11 O -0.55 -22.84 13.00 16.80 0.22 -22.63 16
12 N -0.70 -22.95 5.18 -418.92 -2.17 -25.12 16
13 C 0.17 6.25 0.74 5.19 0.00 6.26 16
14 C -0.10 -3.31 5.42 31.64 0.17 -3.14 16
15 C -0.11 -2.89 6.87 32.04 0.22 -2.67 16
16 C -0.12 -4.17 6.22 31.80 0.20 -3.97 16
17 C 0.16 6.03 3.67 46.24 0.17 6.20 16
18 H 0.06 2.14 7.96 -2.39 -0.02 2.12 16
19 N -0.61 -30.31 3.03 -663.70 -2.01 -32.31 16
20 C -0.23 -12.40 9.96 84.03 0.84 -11.56 16
21 H 0.09 4.33 7.85 -2.92 -0.02 4.31 16
22 C -0.07 -3.68 5.39 84.86 0.46 -3.22 16
23 N -0.95 -57.54 10.74 21.65 0.23 -57.31 16
24 Si 0.97 45.35 29.57 68.60 2.03 47.38 16
25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
26 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16
27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
28 C 0.19 9.83 5.41 86.85 0.47 10.30 16
29 C -0.13 -5.70 5.71 31.89 0.18 -5.51 16
30 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16
31 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16
32 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16
33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16
34 H 0.11 0.48 8.07 -2.39 -0.02 0.46 16
35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
36 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16
37 H 0.16 2.77 6.52 -2.91 -0.02 2.75 16
38 H 0.41 11.40 6.58 -92.71 -0.61 10.79 16
39 H 0.06 2.07 7.37 -2.39 -0.02 2.05 16
40 H 0.06 2.02 7.60 -2.39 -0.02 2.01 16
41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
44 H 0.05 2.01 8.09 -2.39 -0.02 1.99 16
45 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16
46 H -0.01 -0.44 8.06 -2.38 -0.02 -0.45 16
47 H 0.03 1.59 6.99 -2.39 -0.02 1.57 16
48 H 0.06 2.71 6.51 -2.39 -0.02 2.69 16
49 H 0.07 2.93 7.63 -2.39 -0.02 2.91 16
Total: -1.00 -75.83 387.59 1.85 -73.98
By element:
Atomic # 1 Polarization: 23.09 SS G_CDS: 0.36 Total: 23.45 kcal
Atomic # 6 Polarization: 12.99 SS G_CDS: 6.46 Total: 19.45 kcal
Atomic # 7 Polarization: -124.78 SS G_CDS: -6.64 Total: -131.42 kcal
Atomic # 8 Polarization: -32.49 SS G_CDS: -0.35 Total: -32.84 kcal
Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal
Total: -75.83 1.85 -73.98 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992298959.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.609 kcal
(2) G-P(sol) polarization free energy of solvation -75.832 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds