Wall clock time and date at job start Wed Apr 1 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38355 * 119.40962 * 2 1 4 4 C 1.38333 * 119.45573 * 179.97438 * 3 2 1 5 5 C 1.39981 * 118.35521 * 0.02562 * 4 3 2 6 6 C 1.47516 * 120.60256 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00387 * 136.60113 * 6 5 4 8 8 N 1.34777 * 119.99805 * 316.59846 * 6 5 4 9 9 C 1.47375 * 125.74652 * 354.67961 * 8 6 5 10 10 C 1.55444 * 106.74276 * 181.09537 * 9 8 6 11 11 H 1.09002 * 112.49810 * 213.26760 * 10 9 8 12 12 C 1.52988 * 106.45153 * 89.98810 * 10 9 8 13 13 C 1.52601 * 111.01516 * 197.04053 * 12 10 9 14 14 C 1.53318 * 108.45503 * 62.29113 * 13 12 10 15 15 C 1.52815 * 108.15207 * 296.15154 * 14 13 12 16 16 H 1.08999 * 109.04142 * 298.65419 * 15 14 13 17 17 N 1.46498 * 109.04294 * 179.70484 * 15 14 13 18 18 C 1.36945 * 119.99932 * 83.95428 * 17 15 14 19 19 H 1.07996 * 119.99726 * 359.72224 * 18 17 15 20 20 C 1.38806 * 119.99898 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00382 * 359.72171 * 20 18 17 22 22 Si 1.86797 * 119.99848 * 179.72711 * 20 18 17 23 23 H 1.48499 * 109.47556 * 89.99643 * 22 20 18 24 24 H 1.48501 * 109.46900 * 209.99713 * 22 20 18 25 25 H 1.48505 * 109.47004 * 329.99187 * 22 20 18 26 26 C 1.50861 * 111.60940 * 59.17764 * 15 14 13 27 27 H 1.08994 * 109.65409 * 184.85906 * 26 15 14 28 28 C 1.47935 * 125.74484 * 174.71830 * 8 6 5 29 29 C 1.40291 * 118.80170 * 0.26970 * 5 4 3 30 30 O 1.35423 * 119.79792 * 179.70564 * 29 5 4 31 31 N 1.31882 * 119.40213 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47292 * 89.99190 * 1 2 3 33 33 H 1.08992 * 109.47095 * 209.99853 * 1 2 3 34 34 H 1.09005 * 109.46603 * 329.99731 * 1 2 3 35 35 H 1.07998 * 120.27327 * 0.02748 * 3 2 1 36 36 H 1.08003 * 120.82305 * 179.97438 * 4 3 2 37 37 H 1.08991 * 110.00869 * 61.77155 * 9 8 6 38 38 H 1.09001 * 110.00253 * 300.41271 * 9 8 6 39 39 H 1.08993 * 109.16911 * 76.64567 * 12 10 9 40 40 H 1.09000 * 109.16685 * 317.43624 * 12 10 9 41 41 H 1.09000 * 109.64102 * 302.60364 * 13 12 10 42 42 H 1.08997 * 109.81124 * 182.08093 * 13 12 10 43 43 H 1.08996 * 109.72886 * 176.48519 * 14 13 12 44 44 H 1.09005 * 109.76406 * 55.83577 * 14 13 12 45 45 H 0.97003 * 120.00202 * 263.95511 * 17 15 14 46 46 H 0.96999 * 120.00510 * 180.02562 * 21 20 18 47 47 H 1.09002 * 110.57161 * 323.02280 * 28 8 6 48 48 H 1.09000 * 110.57229 * 85.89188 * 28 8 6 49 49 H 0.96697 * 114.00529 * 90.00233 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 0.0005 5 6 4.2356 -0.0250 0.0005 6 6 5.7097 -0.0816 0.0016 7 8 6.2873 -0.8698 0.7252 8 7 6.4162 0.7403 -0.7995 9 6 5.8510 1.6613 -1.8015 10 6 7.0529 2.3694 -2.4872 11 1 6.8227 3.3945 -2.7778 12 6 7.4403 1.5018 -3.6863 13 6 8.8394 1.8513 -4.1854 14 6 9.8425 1.5559 -3.0641 15 6 9.5316 2.4838 -1.8905 16 1 9.6495 3.5180 -2.2139 17 7 10.4758 2.2127 -0.8036 18 6 11.7111 2.8036 -0.8064 19 1 11.9910 3.4660 -1.6122 20 6 12.6059 2.5463 0.2231 21 7 12.2651 1.7386 1.2049 22 14 14.2938 3.3464 0.2153 23 1 14.2289 4.6463 0.9303 24 1 15.2672 2.4551 0.8960 25 1 14.7274 3.5737 -1.1868 26 6 8.1253 2.2844 -1.3820 27 1 7.9088 3.0181 -0.6055 28 6 7.8898 0.8692 -0.8215 29 6 3.4757 -1.2042 -0.0058 30 8 4.0990 -2.4065 -0.0120 31 7 2.1545 -1.1489 -0.0005 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6413 2.1375 0.0004 36 1 4.1224 2.1343 0.0001 37 1 5.2133 2.3981 -1.3132 38 1 5.2769 1.1019 -2.5402 39 1 6.7229 1.6624 -4.4909 40 1 7.4172 0.4528 -3.3913 41 1 8.8820 2.9089 -4.4457 42 1 9.0806 1.2486 -5.0609 43 1 10.8564 1.7395 -3.4197 44 1 9.7462 0.5173 -2.7476 45 1 10.2259 1.6145 -0.0820 46 1 12.8902 1.5591 1.9245 47 1 8.2969 0.7831 0.1860 48 1 8.3301 0.1195 -1.4789 49 1 4.2799 -2.7603 0.8695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992827948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:59 Heat of formation + Delta-G solvation = -26.008527 kcal Electronic energy + Delta-G solvation = -31015.205448 eV Core-core repulsion = 26942.542333 eV Total energy + Delta-G solvation = -4072.663116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21700 -40.25364 -38.39880 -37.40404 -35.49132 -33.89719 -33.39359 -31.92742 -31.56430 -30.60393 -29.03963 -28.15341 -26.66357 -24.81253 -23.67081 -23.56503 -22.76854 -21.74067 -20.78297 -20.01628 -18.79306 -18.46705 -17.61928 -17.15048 -16.75133 -16.25414 -15.91385 -15.68308 -14.92743 -14.86849 -14.52813 -14.34723 -14.07191 -13.95028 -13.61444 -13.54015 -13.29111 -13.05384 -12.90955 -12.70403 -12.63757 -12.45575 -12.39437 -11.94411 -11.87687 -11.68051 -11.33933 -11.09498 -11.01122 -10.86788 -10.71657 -10.29023 -10.23542 -10.21310 -10.16208 -9.99702 -9.71604 -9.61115 -9.52818 -9.11672 -8.87786 -8.52674 -6.96330 -5.75642 -3.05289 0.37623 0.78631 2.61801 2.90652 3.18617 3.43388 3.46773 3.48504 3.50606 4.13113 4.25694 4.37679 4.45829 4.56038 4.61862 4.78586 4.79673 4.97362 5.00926 5.16597 5.19290 5.24238 5.31228 5.38265 5.40780 5.54895 5.56069 5.60851 5.61599 5.67407 5.73470 5.76105 5.81992 5.88526 6.00776 6.04104 6.10064 6.21696 6.24185 6.32466 6.38514 6.48960 6.58265 6.72119 6.90043 7.10180 7.25708 7.49409 7.58129 7.70221 8.12631 8.42143 9.53336 10.09902 10.44120 11.46678 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.002671 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.780756 B =10479.192306 C =11207.226472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.189 4.189 4 C -0.028 4.028 5 C -0.196 4.196 6 C 0.582 3.418 7 O -0.525 6.525 8 N -0.611 5.611 9 C 0.098 3.902 10 C -0.089 4.089 11 H 0.098 0.902 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.137 4.137 15 C 0.191 3.809 16 H 0.050 0.950 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.094 4.094 27 H 0.079 0.921 28 C 0.117 3.883 29 C 0.367 3.633 30 O -0.472 6.472 31 N -0.507 5.507 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.239 0.688 -6.779 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.209 4.209 4 C -0.054 4.054 5 C -0.203 4.203 6 C 0.369 3.631 7 O -0.402 6.402 8 N -0.344 5.344 9 C -0.025 4.025 10 C -0.109 4.109 11 H 0.116 0.884 12 C -0.150 4.150 13 C -0.156 4.156 14 C -0.177 4.177 15 C 0.081 3.919 16 H 0.068 0.932 17 N -0.368 5.368 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.114 4.114 27 H 0.097 0.903 28 C -0.004 4.004 29 C 0.187 3.813 30 O -0.280 6.280 31 N -0.227 5.227 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -24.223 -0.472 -6.925 25.198 hybrid contribution 1.436 0.847 0.734 1.822 sum -22.787 0.376 -6.192 23.616 Atomic orbital electron populations 1.20815 0.88152 1.03946 1.03576 1.21253 0.97051 0.87214 0.91547 1.21900 0.94393 0.99585 1.04994 1.21840 0.94409 0.97268 0.91845 1.21069 0.94964 0.94521 1.09751 1.17395 0.85512 0.80174 0.79987 1.90814 1.71063 1.37096 1.41225 1.48597 1.08466 1.40151 1.37227 1.22626 0.96764 0.92323 0.90821 1.22331 0.93867 0.99304 0.95351 0.88398 1.21556 0.97367 0.99664 0.96385 1.21523 0.94687 1.01038 0.98325 1.22325 0.98523 1.00836 0.96016 1.19586 0.86380 0.96981 0.88935 0.93164 1.42517 1.13580 1.55846 1.24807 1.19212 0.90906 1.21330 1.05611 0.91170 1.24744 0.98574 1.00159 0.97403 1.69660 1.35905 1.39802 1.12530 0.86224 0.84348 0.78499 0.77294 1.21793 1.21830 1.20803 1.21885 0.96173 0.96347 0.97021 0.90266 1.22326 0.77872 0.97366 1.02853 1.19041 0.86109 0.84915 0.91192 1.84640 1.76518 1.32196 1.34660 1.67113 1.09225 1.30465 1.15876 0.89832 0.90097 0.90138 0.83735 0.83457 0.91619 0.91377 0.92464 0.91957 0.92172 0.92671 0.91731 0.92446 0.78193 0.93472 0.89595 0.90674 0.72891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 2 C 0.17 1.51 6.78 -82.53 -0.56 0.95 16 3 C -0.19 -1.46 9.71 -39.50 -0.38 -1.84 16 4 C -0.03 -0.27 8.58 -38.89 -0.33 -0.60 16 5 C -0.20 -2.53 5.43 -104.69 -0.57 -3.10 16 6 C 0.58 9.23 7.22 -12.48 -0.09 9.14 16 7 O -0.53 -10.19 16.64 -8.09 -0.13 -10.32 16 8 N -0.61 -8.85 3.34 -170.90 -0.57 -9.42 16 9 C 0.10 1.06 5.19 -2.27 -0.01 1.05 16 10 C -0.09 -1.02 3.64 -88.68 -0.32 -1.34 16 11 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.11 -1.29 4.60 -26.94 -0.12 -1.42 16 13 C -0.12 -1.51 5.93 -26.77 -0.16 -1.67 16 14 C -0.14 -2.31 5.31 -26.66 -0.14 -2.45 16 15 C 0.19 3.52 2.45 -69.10 -0.17 3.35 16 16 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 17 N -0.73 -17.47 5.02 -54.57 -0.27 -17.75 16 18 C -0.24 -6.47 9.90 -15.06 -0.15 -6.62 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.09 -1.44 2.57 -90.51 -0.23 -1.67 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 C 0.12 1.96 5.09 -2.72 -0.01 1.94 16 29 C 0.37 4.86 7.74 -16.61 -0.13 4.73 16 30 O -0.47 -6.34 12.46 -31.34 -0.39 -6.73 16 31 N -0.51 -6.12 10.28 -9.20 -0.09 -6.21 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.15 1.16 6.08 -52.48 -0.32 0.84 16 37 H 0.07 0.57 5.72 -51.93 -0.30 0.27 16 38 H 0.07 0.70 7.77 -51.93 -0.40 0.29 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.81 6.93 -51.93 -0.36 0.45 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.03 6.69 -51.93 -0.35 0.68 16 45 H 0.38 9.97 6.52 -40.82 -0.27 9.70 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 47 H 0.09 1.70 7.45 -51.93 -0.39 1.31 16 48 H 0.08 1.32 5.78 -51.93 -0.30 1.02 16 49 H 0.41 4.06 9.06 45.56 0.41 4.47 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -34.36 384.93 -9.54 -43.89 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.46 Total: 11.09 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.12 Total: -0.21 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.22 Total: -60.77 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.53 Total: -17.05 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.36 -9.54 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992827948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.886 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds