Wall clock time and date at job start Wed Apr 1 2020 04:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38356 * 119.40470 * 2 1 4 4 C 1.38338 * 119.45808 * 179.97438 * 3 2 1 5 5 C 1.39994 * 118.34385 * 0.02562 * 4 3 2 6 6 C 1.47524 * 120.59031 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99901 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00433 * 359.97438 * 6 5 4 9 9 C 1.46501 * 120.00199 * 180.02562 * 8 6 5 10 10 C 1.52998 * 115.55348 * 179.97438 * 9 8 6 11 11 C 1.53039 * 109.45426 * 274.38447 * 10 9 8 12 12 C 1.53186 * 109.31773 * 181.37531 * 11 10 9 13 13 N 1.46929 * 108.77443 * 305.36850 * 12 11 10 14 14 C 1.36943 * 120.62913 * 233.58420 * 13 12 11 15 15 H 1.08000 * 119.99404 * 27.69419 * 14 13 12 16 16 C 1.38804 * 119.99837 * 207.69755 * 14 13 12 17 17 N 1.31618 * 120.00488 * 17.35070 * 16 14 13 18 18 Si 1.86806 * 119.99788 * 197.35548 * 16 14 13 19 19 H 1.48500 * 109.46986 * 59.99796 * 18 16 14 20 20 H 1.48495 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46875 * 300.00013 * 18 16 14 22 22 C 1.46924 * 118.74006 * 53.60403 * 13 12 11 23 23 C 1.53048 * 109.45532 * 34.44737 * 10 9 8 24 24 C 1.53001 * 117.50001 * 325.67002 * 9 8 6 25 25 C 1.53008 * 117.49930 * 34.32789 * 9 8 6 26 26 C 1.40276 * 118.80932 * 0.26898 * 5 4 3 27 27 O 1.35426 * 119.79960 * 179.72771 * 26 5 4 28 28 N 1.31874 * 119.40744 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47033 * 90.00070 * 1 2 3 30 30 H 1.08998 * 109.47368 * 210.00029 * 1 2 3 31 31 H 1.08997 * 109.47143 * 330.00103 * 1 2 3 32 32 H 1.07999 * 120.27376 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.83005 * 179.97438 * 4 3 2 34 34 H 0.96996 * 120.00395 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.46286 * 154.41340 * 10 9 8 36 36 H 1.09000 * 109.49353 * 301.33417 * 11 10 9 37 37 H 1.09004 * 109.49394 * 61.42360 * 11 10 9 38 38 H 1.08996 * 109.58795 * 185.57701 * 12 11 10 39 39 H 1.08999 * 109.58415 * 65.14887 * 12 11 10 40 40 H 0.97003 * 120.00197 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.58430 * 186.60482 * 22 13 12 42 42 H 1.08999 * 109.58822 * 66.18143 * 22 13 12 43 43 H 1.08996 * 109.49618 * 298.57577 * 23 10 9 44 44 H 1.08994 * 109.49914 * 58.64462 * 23 10 9 45 45 H 1.09000 * 117.50067 * 215.00149 * 24 9 8 46 46 H 1.09012 * 117.49580 * 0.02562 * 24 9 8 47 47 H 1.09005 * 117.49492 * 359.97438 * 25 9 8 48 48 H 1.09000 * 117.49968 * 144.97526 * 25 9 8 49 49 H 0.96701 * 113.99802 * 89.99806 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.2355 -0.0249 0.0005 6 6 5.7097 -0.0813 0.0016 7 8 6.2769 -1.1569 0.0021 8 7 6.4278 1.0591 0.0022 9 6 7.8917 1.0030 0.0027 10 6 8.6041 2.3570 0.0027 11 6 8.7443 2.8592 -1.4361 12 6 9.4882 4.1983 -1.4353 13 7 8.7886 5.1273 -0.5374 14 6 8.3937 6.3615 -0.9804 15 1 8.1733 6.5146 -2.0265 16 6 8.2767 7.4155 -0.0849 17 7 8.8552 7.3439 1.0952 18 14 7.2981 8.9359 -0.5545 19 1 5.8928 8.5509 -0.8411 20 1 7.3265 9.9088 0.5669 21 1 7.8976 9.5566 -1.7630 22 6 8.5211 4.7073 0.8449 23 6 7.7879 3.3624 0.8185 24 6 8.5544 -0.1441 0.7681 25 6 8.5550 -0.1439 -0.7626 26 6 3.4758 -1.2041 -0.0058 27 8 4.0992 -2.4063 -0.0115 28 7 2.1546 -1.1488 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6411 2.1376 0.0004 33 1 4.1223 2.1345 0.0001 34 1 5.9754 1.9172 0.0015 35 1 9.5933 2.2470 0.4470 36 1 9.3055 2.1315 -2.0223 37 1 7.7545 2.9931 -1.8727 38 1 9.5039 4.6082 -2.4451 39 1 10.5089 4.0490 -1.0833 40 1 8.7737 8.0807 1.7208 41 1 7.8987 5.4531 1.3394 42 1 9.4629 4.5995 1.3828 43 1 6.8073 3.4916 0.3606 44 1 7.6682 2.9928 1.8368 45 1 9.4979 0.0658 1.2720 46 1 7.9011 -0.8574 1.2709 47 1 7.9021 -0.8568 -1.2662 48 1 9.4987 0.0664 -1.2661 49 1 4.2798 -2.7599 0.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000272195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:11 Heat of formation + Delta-G solvation = 12.018746 kcal Electronic energy + Delta-G solvation = -30912.722188 eV Core-core repulsion = 26841.708059 eV Total energy + Delta-G solvation = -4071.014130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.22047 -40.02596 -37.99544 -37.36436 -35.94001 -34.02900 -32.79984 -32.25566 -31.90974 -30.48764 -29.68068 -28.21405 -25.62774 -23.94813 -23.40366 -22.83757 -22.55397 -21.71770 -21.13094 -19.83378 -18.95523 -18.82234 -18.08665 -17.08181 -16.78092 -16.06410 -15.44106 -15.27799 -14.85656 -14.84828 -14.51331 -14.21353 -14.14379 -13.72392 -13.60770 -13.56058 -13.31177 -13.05730 -12.90614 -12.73752 -12.58521 -12.42676 -12.32725 -11.83254 -11.54028 -11.23651 -11.13663 -11.03901 -10.75788 -10.75616 -10.42405 -10.30948 -10.23542 -10.16536 -10.12606 -9.92722 -9.63951 -9.53901 -9.33914 -9.13116 -8.53716 -8.43030 -6.71738 -5.83414 -3.25326 0.28074 0.78674 2.63906 2.95224 3.21909 3.33947 3.40349 3.40885 3.49501 4.11877 4.16982 4.31462 4.42996 4.45424 4.60158 4.82288 4.88824 5.02923 5.14020 5.18767 5.19849 5.21540 5.31788 5.38759 5.53970 5.57875 5.59903 5.66335 5.69961 5.73567 5.89185 5.95470 6.06027 6.09835 6.17097 6.27343 6.47378 6.47518 6.50567 6.53793 6.68904 6.71213 6.78587 6.96440 7.26155 7.28786 7.46846 7.56597 7.59439 7.74933 8.15408 8.40543 9.17122 9.80695 10.37474 11.25046 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.003163 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.565563 B = 8850.162088 C =10893.904254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.174 3.826 3 C -0.189 4.189 4 C -0.024 4.024 5 C -0.210 4.210 6 C 0.561 3.439 7 O -0.518 6.518 8 N -0.684 5.684 9 C 0.108 3.892 10 C -0.042 4.042 11 C -0.125 4.125 12 C 0.144 3.856 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.171 3.829 23 C -0.134 4.134 24 C -0.178 4.178 25 C -0.176 4.176 26 C 0.375 3.625 27 O -0.459 6.459 28 N -0.511 5.511 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.405 0.595 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.019 0.981 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.093 0.907 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 -14.554 0.621 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 C -0.209 4.209 4 C -0.050 4.050 5 C -0.217 4.217 6 C 0.347 3.653 7 O -0.396 6.396 8 N -0.335 5.335 9 C 0.021 3.979 10 C -0.061 4.061 11 C -0.164 4.164 12 C 0.018 3.982 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.046 3.954 23 C -0.173 4.173 24 C -0.216 4.216 25 C -0.214 4.214 26 C 0.194 3.806 27 O -0.267 6.267 28 N -0.231 5.231 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.111 0.889 49 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -12.058 -15.917 0.157 19.969 hybrid contribution -0.179 1.913 0.263 1.939 sum -12.237 -14.003 0.420 18.601 Atomic orbital electron populations 1.20839 0.88080 1.04018 1.03691 1.21291 0.97121 0.87204 0.90824 1.21946 0.94496 0.99743 1.04721 1.21825 0.94746 0.97230 0.91200 1.21154 0.95038 0.94427 1.11065 1.17803 0.85818 0.84439 0.77212 1.90763 1.71180 1.28656 1.49002 1.45331 1.05875 1.08559 1.73704 1.20952 0.78719 0.92521 1.05693 1.20784 0.98299 0.89419 0.97607 1.22060 1.01170 0.98408 0.94759 1.20918 0.93356 0.89135 0.94820 1.44059 1.65258 1.13699 1.08478 1.19148 1.38971 0.85944 0.94213 0.91757 1.25024 0.99900 0.97291 0.97389 1.70021 1.44010 1.32312 1.08375 0.86389 0.80346 0.82722 0.77433 1.21087 1.21637 1.20896 1.20766 0.97057 0.91343 0.86276 1.22215 0.98973 0.98309 0.97806 1.23435 1.01866 1.01206 0.95078 1.23363 1.02043 1.01144 0.94869 1.19105 0.86040 0.85102 0.90323 1.84722 1.76376 1.31801 1.33761 1.67142 1.09345 1.30447 1.16171 0.89721 0.90063 0.90000 0.83531 0.83714 0.75747 0.90198 0.92849 0.92493 0.92792 0.96472 0.93573 0.89360 0.96325 0.93247 0.92972 0.89004 0.87749 0.87611 0.88911 0.73602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.01 0.37 -0.29 16 2 C 0.17 1.64 6.78 -82.53 -0.56 1.08 16 3 C -0.19 -1.62 9.71 -39.50 -0.38 -2.00 16 4 C -0.02 -0.24 9.64 -38.89 -0.37 -0.61 16 5 C -0.21 -2.57 5.90 -104.69 -0.62 -3.19 16 6 C 0.56 7.76 7.47 -12.48 -0.09 7.67 16 7 O -0.52 -8.16 10.67 -16.49 -0.18 -8.33 16 8 N -0.68 -9.10 5.34 -48.64 -0.26 -9.36 16 9 C 0.11 1.54 2.48 -131.82 -0.33 1.21 16 10 C -0.04 -0.65 2.28 -90.58 -0.21 -0.86 16 11 C -0.12 -2.05 5.22 -26.62 -0.14 -2.19 16 12 C 0.14 2.89 6.52 -3.71 -0.02 2.86 16 13 N -0.59 -14.08 3.00 -172.32 -0.52 -14.59 16 14 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 15 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 16 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 17 N -0.90 -25.35 11.19 55.49 0.62 -24.73 16 18 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C 0.17 3.83 5.31 -3.71 -0.02 3.81 16 23 C -0.13 -2.29 4.83 -26.61 -0.13 -2.42 16 24 C -0.18 -2.46 9.37 -26.69 -0.25 -2.71 16 25 C -0.18 -2.48 8.91 -26.69 -0.24 -2.72 16 26 C 0.37 4.75 7.77 -16.61 -0.13 4.62 16 27 O -0.46 -5.76 11.66 -39.74 -0.46 -6.22 16 28 N -0.51 -6.12 10.28 -9.21 -0.09 -6.22 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.15 1.21 6.51 -52.49 -0.34 0.87 16 34 H 0.40 4.97 4.76 -40.82 -0.19 4.78 16 35 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 36 H 0.05 0.79 7.24 -51.93 -0.38 0.41 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.82 6.50 -51.93 -0.34 0.48 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 46 H 0.10 1.55 6.37 -51.92 -0.33 1.21 16 47 H 0.11 1.65 6.37 -51.93 -0.33 1.32 16 48 H 0.09 1.21 7.60 -51.93 -0.39 0.82 16 49 H 0.40 3.39 9.06 45.56 0.41 3.80 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -32.06 385.39 -9.84 -41.90 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.37 Total: 8.41 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.35 Total: -2.58 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.25 Total: -54.90 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.64 Total: -14.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.06 -9.84 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000272195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.915 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds