Wall clock time and date at job start Wed Apr 1 2020 04:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38356 * 119.40470 * 2 1 4 4 C 1.38338 * 119.45808 * 179.97438 * 3 2 1 5 5 C 1.39994 * 118.34385 * 0.02562 * 4 3 2 6 6 C 1.47524 * 120.59031 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99901 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00433 * 359.97438 * 6 5 4 9 9 C 1.46501 * 120.00199 * 180.02562 * 8 6 5 10 10 C 1.52998 * 115.55348 * 179.97438 * 9 8 6 11 11 C 1.53039 * 109.45426 * 274.38447 * 10 9 8 12 12 C 1.53186 * 109.31773 * 181.37531 * 11 10 9 13 13 N 1.46929 * 108.77443 * 305.36850 * 12 11 10 14 14 C 1.36943 * 120.62913 * 233.58420 * 13 12 11 15 15 H 1.08000 * 119.99404 * 27.69419 * 14 13 12 16 16 C 1.38804 * 119.99837 * 207.69755 * 14 13 12 17 17 N 1.31618 * 120.00488 * 17.35070 * 16 14 13 18 18 Si 1.86806 * 119.99788 * 197.35548 * 16 14 13 19 19 H 1.48500 * 109.46986 * 59.99796 * 18 16 14 20 20 H 1.48495 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46875 * 300.00013 * 18 16 14 22 22 C 1.46924 * 118.74006 * 53.60403 * 13 12 11 23 23 C 1.53048 * 109.45532 * 34.44737 * 10 9 8 24 24 C 1.53001 * 117.50001 * 325.67002 * 9 8 6 25 25 C 1.53008 * 117.49930 * 34.32789 * 9 8 6 26 26 C 1.40276 * 118.80932 * 0.26898 * 5 4 3 27 27 O 1.35426 * 119.79960 * 179.72771 * 26 5 4 28 28 N 1.31874 * 119.40744 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47033 * 90.00070 * 1 2 3 30 30 H 1.08998 * 109.47368 * 210.00029 * 1 2 3 31 31 H 1.08997 * 109.47143 * 330.00103 * 1 2 3 32 32 H 1.07999 * 120.27376 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.83005 * 179.97438 * 4 3 2 34 34 H 0.96996 * 120.00395 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.46286 * 154.41340 * 10 9 8 36 36 H 1.09000 * 109.49353 * 301.33417 * 11 10 9 37 37 H 1.09004 * 109.49394 * 61.42360 * 11 10 9 38 38 H 1.08996 * 109.58795 * 185.57701 * 12 11 10 39 39 H 1.08999 * 109.58415 * 65.14887 * 12 11 10 40 40 H 0.97003 * 120.00197 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.58430 * 186.60482 * 22 13 12 42 42 H 1.08999 * 109.58822 * 66.18143 * 22 13 12 43 43 H 1.08996 * 109.49618 * 298.57577 * 23 10 9 44 44 H 1.08994 * 109.49914 * 58.64462 * 23 10 9 45 45 H 1.09000 * 117.50067 * 215.00149 * 24 9 8 46 46 H 1.09012 * 117.49580 * 0.02562 * 24 9 8 47 47 H 1.09005 * 117.49492 * 359.97438 * 25 9 8 48 48 H 1.09000 * 117.49968 * 144.97526 * 25 9 8 49 49 H 0.96701 * 113.99802 * 89.99806 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.2355 -0.0249 0.0005 6 6 5.7097 -0.0813 0.0016 7 8 6.2769 -1.1569 0.0021 8 7 6.4278 1.0591 0.0022 9 6 7.8917 1.0030 0.0027 10 6 8.6041 2.3570 0.0027 11 6 8.7443 2.8592 -1.4361 12 6 9.4882 4.1983 -1.4353 13 7 8.7886 5.1273 -0.5374 14 6 8.3937 6.3615 -0.9804 15 1 8.1733 6.5146 -2.0265 16 6 8.2767 7.4155 -0.0849 17 7 8.8552 7.3439 1.0952 18 14 7.2981 8.9359 -0.5545 19 1 5.8928 8.5509 -0.8411 20 1 7.3265 9.9088 0.5669 21 1 7.8976 9.5566 -1.7630 22 6 8.5211 4.7073 0.8449 23 6 7.7879 3.3624 0.8185 24 6 8.5544 -0.1441 0.7681 25 6 8.5550 -0.1439 -0.7626 26 6 3.4758 -1.2041 -0.0058 27 8 4.0992 -2.4063 -0.0115 28 7 2.1546 -1.1488 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6411 2.1376 0.0004 33 1 4.1223 2.1345 0.0001 34 1 5.9754 1.9172 0.0015 35 1 9.5933 2.2470 0.4470 36 1 9.3055 2.1315 -2.0223 37 1 7.7545 2.9931 -1.8727 38 1 9.5039 4.6082 -2.4451 39 1 10.5089 4.0490 -1.0833 40 1 8.7737 8.0807 1.7208 41 1 7.8987 5.4531 1.3394 42 1 9.4629 4.5995 1.3828 43 1 6.8073 3.4916 0.3606 44 1 7.6682 2.9928 1.8368 45 1 9.4979 0.0658 1.2720 46 1 7.9011 -0.8574 1.2709 47 1 7.9021 -0.8568 -1.2662 48 1 9.4987 0.0664 -1.2661 49 1 4.2798 -2.7599 0.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000272195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:10 Heat of formation + Delta-G solvation = -9.558384 kcal Electronic energy + Delta-G solvation = -30913.657843 eV Core-core repulsion = 26841.708059 eV Total energy + Delta-G solvation = -4071.949784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.13465 -41.04466 -39.29709 -38.28086 -37.32673 -34.95628 -34.55201 -33.18058 -32.63114 -32.15384 -31.33382 -28.91554 -27.38379 -24.99176 -24.28560 -24.07459 -23.99708 -22.97188 -22.23987 -21.21275 -20.23059 -19.75567 -19.09588 -18.65583 -17.85050 -16.91888 -16.83780 -16.47627 -16.25296 -15.80435 -15.62900 -15.38660 -15.28324 -14.98150 -14.87468 -14.84343 -14.58613 -14.32470 -14.13725 -13.89829 -13.58438 -13.14691 -13.11315 -13.06628 -12.92737 -12.63913 -12.59487 -12.51164 -12.34970 -12.15747 -11.99976 -11.88322 -11.76974 -11.48696 -11.14987 -11.08082 -11.03964 -10.85446 -10.49508 -10.42860 -9.92689 -9.54872 -8.64561 -7.84238 -5.28708 -0.53164 0.02627 1.50408 1.51043 1.58474 1.70269 1.93923 2.42096 2.54340 2.66711 2.99743 3.29609 3.38249 3.57926 3.59697 3.63945 3.74451 3.84094 3.92707 4.02185 4.16701 4.28960 4.35021 4.40044 4.49796 4.53579 4.64191 4.70142 4.76021 4.78593 4.83312 4.86964 4.95114 5.00917 5.02999 5.06345 5.11196 5.19446 5.24810 5.27499 5.37426 5.39253 5.46772 5.53414 5.60182 5.68399 5.80141 6.41823 6.42790 6.52342 6.78551 7.12274 7.18914 7.90570 8.41820 9.21740 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.003163 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.565563 B = 8850.162088 C =10893.904254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.181 4.181 4 C -0.025 4.025 5 C -0.228 4.228 6 C 0.561 3.439 7 O -0.543 6.543 8 N -0.681 5.681 9 C 0.109 3.891 10 C -0.032 4.032 11 C -0.111 4.111 12 C 0.140 3.860 13 N -0.609 5.609 14 C -0.262 4.262 15 H 0.065 0.935 16 C -0.048 4.048 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.274 1.274 20 H -0.296 1.296 21 H -0.280 1.280 22 C 0.178 3.822 23 C -0.119 4.119 24 C -0.173 4.173 25 C -0.172 4.172 26 C 0.359 3.641 27 O -0.477 6.477 28 N -0.533 5.533 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.181 0.819 33 H 0.160 0.840 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.013 0.987 40 H 0.249 0.751 41 H 0.056 0.944 42 H -0.006 1.006 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.106 0.894 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 -14.468 -0.019 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.201 4.201 4 C -0.051 4.051 5 C -0.235 4.235 6 C 0.348 3.652 7 O -0.422 6.422 8 N -0.332 5.332 9 C 0.022 3.978 10 C -0.051 4.051 11 C -0.150 4.150 12 C 0.014 3.986 13 N -0.332 5.332 14 C -0.392 4.392 15 H 0.083 0.917 16 C -0.244 4.244 17 N -0.580 5.580 18 Si 0.792 3.208 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.206 1.206 22 C 0.052 3.948 23 C -0.158 4.158 24 C -0.211 4.211 25 C -0.210 4.210 26 C 0.179 3.821 27 O -0.286 6.286 28 N -0.254 5.254 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.198 0.802 33 H 0.178 0.822 34 H 0.248 0.752 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.012 0.988 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -13.775 -15.850 -0.495 21.005 hybrid contribution 0.341 1.875 0.445 1.957 sum -13.434 -13.975 -0.051 19.385 Atomic orbital electron populations 1.20968 0.85597 1.05204 1.04667 1.21971 0.98767 0.86891 0.89325 1.22326 0.94000 1.00793 1.02955 1.22067 0.95598 0.96840 0.90556 1.21051 0.94008 0.95333 1.13060 1.18040 0.86545 0.84054 0.76525 1.90745 1.71832 1.29456 1.50140 1.45261 1.05464 1.08777 1.73674 1.20750 0.79187 0.91598 1.06286 1.20627 0.98199 0.89600 0.96684 1.21898 1.00768 0.96698 0.95663 1.21058 0.93375 0.90228 0.93890 1.44319 1.65944 1.13699 1.09280 1.19465 1.38326 0.87096 0.94328 0.91728 1.25732 1.01080 1.00057 0.97496 1.70177 1.45565 1.32943 1.09357 0.85402 0.79330 0.79304 0.76764 1.20033 1.22250 1.20566 1.20576 0.95813 0.93114 0.85274 1.21989 0.98814 0.95722 0.99246 1.23426 1.02119 1.00517 0.95018 1.23322 1.02215 1.00440 0.94998 1.19270 0.86550 0.85160 0.91119 1.84669 1.76625 1.32238 1.35099 1.67198 1.09064 1.31960 1.17189 0.88645 0.90349 0.87374 0.80167 0.82235 0.75155 0.90195 0.90520 0.92695 0.92980 0.96865 0.94164 0.92543 0.98767 0.92347 0.91544 0.87723 0.88782 0.89147 0.87557 0.72259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.16 71.24 0.72 -0.27 16 2 C 0.17 2.82 6.78 42.58 0.29 3.11 16 3 C -0.18 -2.58 9.71 22.32 0.22 -2.36 16 4 C -0.02 -0.44 9.64 22.72 0.22 -0.22 16 5 C -0.23 -5.39 5.90 -19.91 -0.12 -5.50 16 6 C 0.56 15.12 7.47 86.69 0.65 15.77 16 7 O -0.54 -17.02 10.67 16.79 0.18 -16.84 16 8 N -0.68 -17.07 5.34 -426.05 -2.28 -19.35 16 9 C 0.11 2.90 2.48 3.61 0.01 2.91 16 10 C -0.03 -0.94 2.28 -10.77 -0.02 -0.96 16 11 C -0.11 -3.44 5.22 30.67 0.16 -3.28 16 12 C 0.14 5.49 6.52 86.36 0.56 6.05 16 13 N -0.61 -28.93 3.00 -699.11 -2.09 -31.02 16 14 C -0.26 -13.82 9.58 84.03 0.81 -13.01 16 15 H 0.07 3.34 7.89 -2.91 -0.02 3.31 16 16 C -0.05 -2.59 4.91 84.86 0.42 -2.17 16 17 N -0.93 -53.48 11.19 21.65 0.24 -53.24 16 18 Si 0.96 43.06 29.59 68.60 2.03 45.09 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.18 8.00 5.31 86.36 0.46 8.46 16 23 C -0.12 -3.92 4.83 30.67 0.15 -3.77 16 24 C -0.17 -4.51 9.37 30.62 0.29 -4.22 16 25 C -0.17 -4.54 8.91 30.62 0.27 -4.26 16 26 C 0.36 9.05 7.77 85.13 0.66 9.71 16 27 O -0.48 -12.23 11.66 -66.40 -0.77 -13.00 16 28 N -0.53 -12.37 10.28 -296.06 -3.04 -15.42 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.44 8.07 -2.39 -0.02 0.42 16 32 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.16 2.27 6.51 -2.91 -0.02 2.25 16 34 H 0.41 9.25 4.76 -92.71 -0.44 8.81 16 35 H 0.08 2.40 7.90 -2.39 -0.02 2.38 16 36 H 0.08 2.04 7.24 -2.39 -0.02 2.03 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.25 13.91 8.31 -92.71 -0.77 13.13 16 41 H 0.06 2.90 6.04 -2.38 -0.01 2.88 16 42 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.06 1.83 6.50 -2.39 -0.02 1.81 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.10 2.46 8.05 -2.39 -0.02 2.44 16 46 H 0.09 2.71 6.37 -2.38 -0.02 2.69 16 47 H 0.09 2.74 6.37 -2.38 -0.02 2.73 16 48 H 0.11 2.50 7.60 -2.39 -0.02 2.48 16 49 H 0.42 7.36 9.06 -74.06 -0.67 6.69 16 Total: -1.00 -70.20 385.39 -0.12 -70.31 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.12 Total: 27.49 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.74 Total: 5.98 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -7.17 Total: -119.03 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.59 Total: -29.84 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -70.20 -0.12 -70.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000272195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.753 kcal (2) G-P(sol) polarization free energy of solvation -70.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds