Wall clock time and date at job start Wed Apr 1 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35427 * 117.00420 * 2 1 4 4 N 1.32239 * 119.79461 * 0.26478 * 3 2 1 5 5 C 1.31886 * 121.79605 * 180.27020 * 4 3 2 6 6 C 1.50700 * 119.40709 * 179.72801 * 5 4 3 7 7 C 1.38357 * 121.18154 * 359.74822 * 5 4 3 8 8 C 1.38332 * 119.46569 * 359.97438 * 7 5 4 9 9 C 1.39993 * 118.34537 * 359.97438 * 8 7 5 10 10 C 1.47525 * 120.59832 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00058 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99541 * 359.97438 * 10 9 8 13 13 C 1.46495 * 119.99507 * 180.02562 * 12 10 9 14 14 H 1.09003 * 115.56928 * 350.71028 * 13 12 10 15 15 C 1.53040 * 117.50335 * 136.41560 * 13 12 10 16 16 C 1.52822 * 117.50158 * 205.00150 * 13 12 10 17 17 C 1.53178 * 117.71571 * 144.90243 * 16 13 12 18 18 C 1.53354 * 108.76913 * 158.87857 * 17 16 13 19 19 N 1.46839 * 108.81141 * 51.30384 * 18 17 16 20 20 C 1.36943 * 120.37901 * 123.11274 * 19 18 17 21 21 H 1.07999 * 119.99950 * 331.22649 * 20 19 18 22 22 C 1.38811 * 120.00018 * 151.22549 * 20 19 18 23 23 N 1.31614 * 120.00086 * 342.28730 * 22 20 19 24 24 Si 1.86795 * 119.99850 * 162.29129 * 22 20 19 25 25 H 1.48497 * 109.47278 * 269.99729 * 24 22 20 26 26 H 1.48506 * 109.47387 * 29.99734 * 24 22 20 27 27 H 1.48499 * 109.47414 * 150.00053 * 24 22 20 28 28 C 1.46844 * 119.24249 * 303.37737 * 19 18 17 29 29 C 1.52871 * 109.07030 * 56.58865 * 28 19 18 30 30 H 1.09004 * 109.47125 * 300.00188 * 1 2 3 31 31 H 1.08996 * 109.47442 * 60.00096 * 1 2 3 32 32 H 1.08998 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47033 * 270.02061 * 6 5 4 34 34 H 1.09005 * 109.47023 * 30.02395 * 6 5 4 35 35 H 1.09003 * 109.46932 * 150.02464 * 6 5 4 36 36 H 1.08001 * 120.26631 * 179.97438 * 7 5 4 37 37 H 1.07997 * 120.82821 * 180.02562 * 8 7 5 38 38 H 0.96995 * 120.00375 * 0.02562 * 12 10 9 39 39 H 1.09003 * 117.50143 * 0.02562 * 15 13 12 40 40 H 1.08991 * 117.53174 * 214.93980 * 15 13 12 41 41 H 1.09003 * 109.59144 * 39.08914 * 17 16 13 42 42 H 1.09007 * 109.58622 * 278.65860 * 17 16 13 43 43 H 1.08997 * 109.57212 * 291.50879 * 18 17 16 44 44 H 1.08995 * 109.58051 * 171.10607 * 18 17 16 45 45 H 0.96999 * 120.00333 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.57737 * 176.41847 * 28 19 18 47 47 H 1.08990 * 109.58155 * 296.82534 * 28 19 18 48 48 H 1.09009 * 109.66214 * 189.04410 * 29 28 19 49 49 H 1.09001 * 109.45030 * 68.65491 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3198 2.3131 0.0053 5 6 1.8772 3.5084 0.0002 6 6 1.0001 4.7339 0.0005 7 6 3.2527 3.6573 -0.0057 8 6 4.0589 2.5332 -0.0059 9 6 3.4450 1.2750 0.0007 10 6 4.2569 0.0433 0.0014 11 8 3.7124 -1.0438 0.0067 12 7 5.6024 0.1232 -0.0047 13 6 6.4086 -1.0999 -0.0045 14 1 5.8581 -2.0263 0.1594 15 6 7.6144 -1.1517 -0.9456 16 6 7.8252 -1.0113 0.5619 17 6 8.3666 -2.2270 1.3204 18 6 9.8986 -2.1589 1.3325 19 7 10.3099 -0.8328 1.8105 20 6 11.1310 -0.7133 2.8999 21 1 11.1167 -1.4681 3.6722 22 6 11.9818 0.3778 3.0114 23 7 12.2651 1.1026 1.9499 24 14 12.7246 0.8175 4.6679 25 1 11.8250 1.7611 5.3790 26 1 12.8899 -0.4153 5.4793 27 1 14.0493 1.4563 4.4626 28 6 9.8259 0.3639 1.1105 29 6 8.2974 0.3467 1.0903 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.7845 5.0265 -1.0271 34 1 0.0670 4.5127 0.5188 35 1 1.5145 5.5487 0.5100 36 1 3.6935 4.6433 -0.0103 37 1 5.1350 2.6239 -0.0100 38 1 6.0368 0.9904 -0.0093 39 1 7.8080 -0.2755 -1.5644 40 1 7.8576 -2.1118 -1.4005 41 1 8.0453 -3.1416 0.8219 42 1 7.9922 -2.2154 2.3441 43 1 10.2791 -2.3178 0.3235 44 1 10.2930 -2.9260 1.9988 45 1 12.8599 1.8649 2.0277 46 1 10.1725 1.2567 1.6310 47 1 10.2019 0.3659 0.0876 48 1 7.9303 1.1401 0.4391 49 1 7.9193 0.4969 2.1015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016866319.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:50 Heat of formation + Delta-G solvation = -9.074948 kcal Electronic energy + Delta-G solvation = -30204.882165 eV Core-core repulsion = 26132.953345 eV Total energy + Delta-G solvation = -4071.928821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.05964 -40.84891 -39.50790 -39.10965 -37.09795 -34.91660 -34.00461 -32.98865 -32.75526 -31.77139 -29.97318 -29.38679 -27.89235 -26.21930 -24.68479 -24.07514 -23.87898 -23.18899 -22.48888 -21.48621 -19.85270 -19.41875 -18.78236 -18.21658 -17.95401 -17.21061 -16.91192 -16.82207 -15.99976 -15.79883 -15.61956 -15.50176 -15.37092 -15.21815 -15.00078 -14.95984 -14.64420 -14.25479 -14.10344 -13.71025 -13.55590 -13.38235 -13.29053 -13.06880 -13.03379 -12.90194 -12.70754 -12.59070 -12.52403 -12.29163 -12.05714 -11.97505 -11.76801 -11.37196 -11.29542 -11.21243 -11.00592 -10.80759 -10.62368 -10.46687 -9.75541 -9.45591 -8.60356 -7.85036 -5.30842 -0.42894 0.18682 1.47450 1.48983 1.57449 1.74238 1.94516 2.05635 2.52667 2.66835 2.99068 3.08081 3.29429 3.60722 3.63981 3.68586 3.83246 3.85580 3.88300 4.00349 4.14177 4.17621 4.29123 4.36634 4.37233 4.54013 4.63667 4.65435 4.70274 4.72734 4.80230 4.87116 4.89129 4.91735 4.94272 4.99282 5.01822 5.10353 5.13867 5.22913 5.31603 5.38566 5.43920 5.49768 5.55751 5.67497 5.80626 6.16091 6.42826 6.45016 6.70875 7.16222 7.18575 7.90446 8.41182 9.20023 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002457 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.125481 B =11393.882128 C =12579.877754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.357 3.643 4 N -0.558 5.558 5 C 0.186 3.814 6 C -0.106 4.106 7 C -0.210 4.210 8 C -0.001 4.001 9 C -0.242 4.242 10 C 0.566 3.434 11 O -0.562 6.562 12 N -0.684 5.684 13 C 0.085 3.915 14 H 0.124 0.876 15 C -0.167 4.167 16 C -0.115 4.115 17 C -0.088 4.088 18 C 0.147 3.853 19 N -0.609 5.609 20 C -0.263 4.263 21 H 0.061 0.939 22 C -0.047 4.047 23 N -0.931 5.931 24 Si 0.963 3.037 25 H -0.285 1.285 26 H -0.272 1.272 27 H -0.294 1.294 28 C 0.180 3.820 29 C -0.089 4.089 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.409 0.591 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.051 0.949 45 H 0.250 0.750 46 H 0.056 0.944 47 H 0.000 1.000 48 H 0.073 0.927 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.952 7.446 -7.067 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.205 6.205 3 C 0.177 3.823 4 N -0.284 5.284 5 C 0.048 3.952 6 C -0.163 4.163 7 C -0.229 4.229 8 C -0.027 4.027 9 C -0.248 4.248 10 C 0.354 3.646 11 O -0.441 6.441 12 N -0.335 5.335 13 C -0.021 4.021 14 H 0.142 0.858 15 C -0.206 4.206 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.021 3.979 19 N -0.332 5.332 20 C -0.393 4.393 21 H 0.079 0.921 22 C -0.243 4.243 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.211 1.211 26 H -0.197 1.197 27 H -0.221 1.221 28 C 0.055 3.945 29 C -0.128 4.128 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.199 0.801 37 H 0.186 0.814 38 H 0.247 0.753 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.018 0.982 48 H 0.092 0.908 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.041 6.409 -7.064 25.864 hybrid contribution 1.626 0.529 0.785 1.882 sum -22.415 6.938 -6.279 24.290 Atomic orbital electron populations 1.23115 0.76021 1.04469 1.02569 1.86499 1.24120 1.24012 1.85899 1.20020 0.88494 0.85321 0.88479 1.67353 1.40433 0.98594 1.22062 1.21956 0.93489 0.92190 0.87529 1.20960 0.98898 0.91662 1.04766 1.22184 0.93329 1.01175 1.06247 1.21987 1.02055 0.89644 0.88996 1.19968 0.91440 0.95212 1.18214 1.18068 0.82075 0.88587 0.75841 1.90776 1.72320 1.30061 1.50987 1.45164 1.04925 1.09337 1.74103 1.21677 0.86125 0.89323 1.05002 0.85831 1.23628 1.00100 1.04401 0.92441 1.21827 0.96485 0.97340 0.95954 1.21532 0.96321 0.95617 0.99230 1.20971 0.93065 0.87260 0.96604 1.44231 1.54660 1.01075 1.33231 1.19484 1.14283 1.08168 0.97381 0.92134 1.25729 0.97989 1.00643 0.99930 1.70168 1.38407 1.20645 1.28449 0.85338 0.77097 0.78118 0.80323 1.21149 1.19713 1.22083 1.20455 0.89913 0.90430 0.93750 1.21476 0.97552 0.94118 0.99674 0.91980 0.91785 0.86844 0.88297 0.90426 0.87495 0.80077 0.81434 0.75264 0.87903 0.87192 0.90136 0.92891 0.96315 0.93044 0.94056 0.92525 0.98161 0.90815 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.38 113.37 1.18 1.81 16 2 O -0.30 -8.68 8.58 -66.41 -0.57 -9.25 16 3 C 0.36 9.54 7.51 85.13 0.64 10.18 16 4 N -0.56 -12.28 9.11 -296.05 -2.70 -14.97 16 5 C 0.19 2.89 6.78 42.58 0.29 3.18 16 6 C -0.11 -0.80 10.16 71.24 0.72 -0.07 16 7 C -0.21 -2.74 9.71 22.32 0.22 -2.52 16 8 C 0.00 -0.02 9.64 22.72 0.22 0.19 16 9 C -0.24 -6.12 5.90 -19.91 -0.12 -6.24 16 10 C 0.57 17.03 7.77 86.69 0.67 17.70 16 11 O -0.56 -21.18 14.76 16.83 0.25 -20.94 16 12 N -0.68 -17.77 5.30 -445.93 -2.36 -20.13 16 13 C 0.08 2.41 6.14 44.95 0.28 2.68 16 14 H 0.12 3.82 7.40 -2.39 -0.02 3.80 16 15 C -0.17 -4.48 9.87 30.56 0.30 -4.18 16 16 C -0.11 -3.61 1.94 -52.17 -0.10 -3.71 16 17 C -0.09 -2.96 5.83 30.77 0.18 -2.78 16 18 C 0.15 6.05 6.52 86.43 0.56 6.61 16 19 N -0.61 -30.23 2.94 -699.85 -2.06 -32.29 16 20 C -0.26 -14.42 9.54 84.03 0.80 -13.62 16 21 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 22 C -0.05 -2.61 4.89 84.86 0.41 -2.20 16 23 N -0.93 -54.00 11.23 21.65 0.24 -53.76 16 24 Si 0.96 44.52 29.59 68.60 2.03 46.55 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 28 C 0.18 8.33 5.37 86.27 0.46 8.79 16 29 C -0.09 -3.12 5.36 30.61 0.16 -2.95 16 30 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 31 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.11 0.30 8.07 -2.39 -0.02 0.29 16 36 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.17 1.96 6.52 -2.91 -0.02 1.94 16 38 H 0.41 8.57 5.22 -92.71 -0.48 8.09 16 39 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 42 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 2.11 7.92 -2.39 -0.02 2.09 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.06 2.98 5.94 -2.39 -0.01 2.96 16 47 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.07 2.08 6.75 -2.38 -0.02 2.06 16 49 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -74.97 395.78 2.20 -72.77 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.48 Total: 19.14 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.88 Total: 12.88 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -6.88 Total: -121.15 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.32 Total: -30.18 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -74.97 2.20 -72.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016866319.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.697 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds