Wall clock time and date at job start Wed Apr 1 2020 04:22:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35425 * 116.99863 * 2 1
4 4 N 1.32239 * 119.80207 * 0.25414 * 3 2 1
5 5 C 1.31881 * 121.80010 * 180.28459 * 4 3 2
6 6 C 1.50697 * 119.40603 * 179.72186 * 5 4 3
7 7 C 1.38359 * 121.18432 * 359.74679 * 5 4 3
8 8 C 1.38335 * 119.46250 * 359.97438 * 7 5 4
9 9 C 1.39989 * 118.34557 * 359.97438 * 8 7 5
10 10 C 1.47522 * 120.59500 * 180.02562 * 9 8 7
11 11 O 1.21587 * 120.00221 * 221.42046 * 10 9 8
12 12 N 1.34782 * 119.99878 * 41.42336 * 10 9 8
13 13 C 1.49207 * 126.05755 * 355.16613 * 12 10 9
14 14 C 1.50361 * 104.86167 * 172.91782 * 13 12 10
15 15 H 1.08997 * 109.72888 * 279.05383 * 14 13 12
16 16 C 1.50997 * 125.53939 * 144.29889 * 14 13 12
17 17 C 1.56413 * 101.59301 * 203.99533 * 16 14 13
18 18 C 1.55941 * 105.78327 * 25.02268 * 17 16 14
19 19 H 1.08998 * 110.49467 * 248.87020 * 18 17 16
20 20 N 1.46503 * 110.60665 * 126.26356 * 18 17 16
21 21 C 1.36941 * 119.99721 * 90.19959 * 20 18 17
22 22 H 1.07992 * 120.00008 * 359.97438 * 21 20 18
23 23 C 1.38814 * 119.99472 * 180.02562 * 21 20 18
24 24 N 1.31625 * 119.99782 * 179.97438 * 23 21 20
25 25 Si 1.86796 * 120.00198 * 359.97438 * 23 21 20
26 26 H 1.48494 * 109.47052 * 90.00673 * 25 23 21
27 27 H 1.48500 * 109.47005 * 210.00183 * 25 23 21
28 28 H 1.48495 * 109.47522 * 330.00382 * 25 23 21
29 29 C 1.50289 * 104.15853 * 7.54004 * 18 17 16
30 30 H 1.08998 * 109.99143 * 80.47413 * 29 18 17
31 31 C 1.49696 * 126.05594 * 175.14424 * 12 10 9
32 32 H 1.08997 * 109.47307 * 59.99813 * 1 2 3
33 33 H 1.09000 * 109.46912 * 179.97438 * 1 2 3
34 34 H 1.08995 * 109.47364 * 299.99652 * 1 2 3
35 35 H 1.09007 * 109.47174 * 270.02406 * 6 5 4
36 36 H 1.08994 * 109.46991 * 30.02029 * 6 5 4
37 37 H 1.08994 * 109.47350 * 150.02621 * 6 5 4
38 38 H 1.08007 * 120.26579 * 179.97438 * 7 5 4
39 39 H 1.07994 * 120.82720 * 180.02562 * 8 7 5
40 40 H 1.09001 * 110.36694 * 54.06802 * 13 12 10
41 41 H 1.09000 * 110.36202 * 291.75818 * 13 12 10
42 42 H 1.08992 * 111.01138 * 322.07222 * 16 14 13
43 43 H 1.09003 * 111.00057 * 85.92532 * 16 14 13
44 44 H 1.08994 * 110.18625 * 144.09964 * 17 16 14
45 45 H 1.09000 * 110.18368 * 265.94330 * 17 16 14
46 46 H 0.96999 * 120.00105 * 270.19910 * 20 18 17
47 47 H 0.96993 * 119.99957 * 179.97438 * 24 23 21
48 48 H 1.09002 * 110.85071 * 36.68548 * 31 12 10
49 49 H 1.09002 * 110.84115 * 273.07378 * 31 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0437 1.2067 0.0000
4 7 1.3197 2.3132 0.0051
5 6 1.8770 3.5084 -0.0003
6 6 0.9999 4.7338 -0.0004
7 6 3.2525 3.6575 -0.0063
8 6 4.0587 2.5334 -0.0062
9 6 3.4449 1.2752 0.0007
10 6 4.2570 0.0436 0.0017
11 8 3.9296 -0.9010 -0.6903
12 7 5.3617 -0.0345 0.7698
13 6 5.9422 1.0698 1.5882
14 6 7.0455 0.4241 2.3800
15 1 6.6265 -0.0831 3.2490
16 6 8.3607 1.0715 2.7422
17 6 9.2775 -0.1775 2.9562
18 6 8.6427 -1.3203 2.1059
19 1 8.2238 -2.0903 2.7537
20 7 9.6357 -1.9000 1.1981
21 6 10.3989 -2.9614 1.6059
22 1 10.2691 -3.3708 2.5967
23 6 11.3402 -3.5104 0.7459
24 7 12.0741 -4.5302 1.1379
25 14 11.5652 -2.8017 -0.9677
26 1 12.5914 -1.7291 -0.9289
27 1 12.0066 -3.8757 -1.8934
28 1 10.2767 -2.2371 -1.4431
29 6 7.5534 -0.6377 1.3275
30 1 7.9769 -0.1288 0.4616
31 6 6.2235 -1.2447 0.9533
32 1 -0.3634 0.5138 -0.8899
33 1 -0.3633 -1.0277 -0.0005
34 1 -0.3634 0.5137 0.8900
35 1 0.7842 5.0262 -1.0281
36 1 0.0668 4.5128 0.5178
37 1 1.5141 5.5488 0.5088
38 1 3.6932 4.6436 -0.0111
39 1 5.1349 2.6241 -0.0104
40 1 5.1875 1.4834 2.2571
41 1 6.3455 1.8493 0.9418
42 1 8.7294 1.6912 1.9249
43 1 8.2706 1.6519 3.6605
44 1 10.2883 0.0337 2.6075
45 1 9.2929 -0.4566 4.0098
46 1 9.7526 -1.5321 0.3083
47 1 12.7316 -4.9140 0.5369
48 1 6.3024 -1.8093 0.0242
49 1 5.8434 -1.8729 1.7590
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001026371483.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:16
Heat of formation + Delta-G solvation = 4.577294 kcal
Electronic energy + Delta-G solvation = -30557.250060 eV
Core-core repulsion = 26485.913245 eV
Total energy + Delta-G solvation = -4071.336815 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.32055 -40.38438 -38.43376 -38.34477 -35.46358 -33.70280 -33.28353 -32.13769
-31.19580 -29.83683 -28.93065 -28.58243 -27.10571 -25.68872 -23.96070 -23.32903
-22.79988 -22.33560 -20.37198 -19.94836 -19.28072 -18.43362 -17.69932 -17.19986
-17.17221 -16.53723 -16.11312 -15.43836 -15.08965 -14.96080 -14.63262 -14.54831
-14.47193 -14.25276 -13.84796 -13.72750 -13.49220 -13.07559 -12.88351 -12.78890
-12.68869 -12.64863 -12.29555 -12.03600 -11.98553 -11.94826 -11.58787 -11.37518
-11.16241 -10.86852 -10.82476 -10.53788 -10.41412 -10.33343 -10.24652 -10.03957
-9.86268 -9.69322 -9.57155 -8.94858 -8.82158 -8.63094 -7.29303 -5.78070
-3.14117 0.43279 0.89692 2.60749 2.76351 2.81463 3.37453 3.40509
3.40768 3.45868 3.71651 3.99859 4.25313 4.38938 4.58286 4.58672
4.71475 4.78615 4.87667 4.99837 5.03838 5.04546 5.06081 5.11604
5.15847 5.23828 5.31951 5.35287 5.45728 5.48592 5.51302 5.53107
5.59248 5.65290 5.69180 5.76544 5.89417 5.94499 6.00296 6.02916
6.12010 6.16130 6.24156 6.34217 6.50994 6.68302 6.90778 6.91377
7.38052 7.49089 7.97789 8.13349 8.41112 9.18782 9.91437 10.10427
11.40132
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.017254 B = 0.002551 C = 0.002417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1622.447554 B =10972.580261 C =11581.768115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.283 6.283
3 C 0.372 3.628
4 N -0.544 5.544
5 C 0.186 3.814
6 C -0.108 4.108
7 C -0.217 4.217
8 C -0.010 4.010
9 C -0.203 4.203
10 C 0.584 3.416
11 O -0.521 6.521
12 N -0.622 5.622
13 C 0.119 3.881
14 C -0.129 4.129
15 H 0.085 0.915
16 C -0.097 4.097
17 C -0.142 4.142
18 C 0.201 3.799
19 H 0.065 0.935
20 N -0.744 5.744
21 C -0.245 4.245
22 H 0.091 0.909
23 C 0.006 3.994
24 N -0.933 5.933
25 Si 0.883 3.117
26 H -0.285 1.285
27 H -0.291 1.291
28 H -0.277 1.277
29 C -0.122 4.122
30 H 0.079 0.921
31 C 0.130 3.870
32 H 0.060 0.940
33 H 0.099 0.901
34 H 0.059 0.941
35 H 0.083 0.917
36 H 0.079 0.921
37 H 0.081 0.919
38 H 0.144 0.856
39 H 0.150 0.850
40 H 0.071 0.929
41 H 0.069 0.931
42 H 0.065 0.935
43 H 0.062 0.938
44 H 0.074 0.926
45 H 0.060 0.940
46 H 0.361 0.639
47 H 0.259 0.741
48 H 0.084 0.916
49 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.212 21.718 1.187 31.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.188 6.188
3 C 0.192 3.808
4 N -0.269 5.269
5 C 0.049 3.951
6 C -0.165 4.165
7 C -0.237 4.237
8 C -0.036 4.036
9 C -0.209 4.209
10 C 0.371 3.629
11 O -0.397 6.397
12 N -0.357 5.357
13 C -0.003 4.003
14 C -0.148 4.148
15 H 0.103 0.897
16 C -0.136 4.136
17 C -0.183 4.183
18 C 0.091 3.909
19 H 0.083 0.917
20 N -0.386 5.386
21 C -0.374 4.374
22 H 0.109 0.891
23 C -0.190 4.190
24 N -0.580 5.580
25 Si 0.713 3.287
26 H -0.211 1.211
27 H -0.217 1.217
28 H -0.203 1.203
29 C -0.143 4.143
30 H 0.097 0.903
31 C 0.009 3.991
32 H 0.078 0.922
33 H 0.117 0.883
34 H 0.078 0.922
35 H 0.102 0.898
36 H 0.098 0.902
37 H 0.099 0.901
38 H 0.161 0.839
39 H 0.168 0.832
40 H 0.089 0.911
41 H 0.087 0.913
42 H 0.084 0.916
43 H 0.081 0.919
44 H 0.093 0.907
45 H 0.079 0.921
46 H 0.195 0.805
47 H 0.070 0.930
48 H 0.103 0.897
49 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -23.174 20.589 0.875 31.012
hybrid contribution 0.956 0.640 -1.259 1.705
sum -22.218 21.229 -0.383 30.732
Atomic orbital electron populations
1.22934 0.77095 1.03366 1.02310 1.86414 1.22833 1.23446 1.86107
1.19687 0.87861 0.84902 0.88339 1.67242 1.40227 0.98186 1.21254
1.21155 0.92189 0.91907 0.89874 1.20811 0.99359 0.92749 1.03560
1.21739 0.93791 0.99928 1.08288 1.21824 1.01157 0.90146 0.90454
1.19863 0.91502 0.95164 1.14404 1.17386 0.79398 0.86632 0.79459
1.90829 1.69524 1.38562 1.40744 1.49734 1.26148 1.13668 1.46192
1.21421 0.95650 0.89618 0.93577 1.22193 0.95001 0.98937 0.98674
0.89694 1.21758 0.93144 0.97845 1.00822 1.23754 0.99735 0.94329
1.00488 1.20056 0.87006 0.92998 0.90879 0.91665 1.42852 1.43606
1.38227 1.13892 1.19077 1.12270 1.05657 1.00431 0.89124 1.24675
0.98601 0.97887 0.97870 1.69699 1.26341 1.25767 1.36225 0.86573
0.77759 0.78430 0.85919 1.21138 1.21746 1.20290 1.22561 0.94861
0.98155 0.98682 0.90261 1.21533 0.88548 0.86576 1.02418 0.92162
0.88313 0.92232 0.89818 0.90216 0.90057 0.83867 0.83248 0.91063
0.91294 0.91649 0.91901 0.90718 0.92138 0.80549 0.93048 0.89745
0.90744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.36 10.38 101.05 1.05 1.41 16
2 O -0.28 -3.94 9.30 -32.91 -0.31 -4.25 16
3 C 0.37 4.91 7.48 -16.61 -0.12 4.79 16
4 N -0.54 -6.07 9.11 -9.21 -0.08 -6.15 16
5 C 0.19 1.59 6.78 -82.53 -0.56 1.03 16
6 C -0.11 -0.52 10.16 36.00 0.37 -0.16 16
7 C -0.22 -1.64 9.71 -39.50 -0.38 -2.02 16
8 C -0.01 -0.10 8.57 -38.89 -0.33 -0.43 16
9 C -0.20 -2.63 5.56 -104.69 -0.58 -3.21 16
10 C 0.58 9.14 7.32 -12.47 -0.09 9.05 16
11 O -0.52 -10.21 16.52 -9.65 -0.16 -10.37 16
12 N -0.62 -8.59 3.43 -172.79 -0.59 -9.19 16
13 C 0.12 1.23 5.18 -3.86 -0.02 1.21 16
14 C -0.13 -1.47 2.77 -90.26 -0.25 -1.72 16
15 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
16 C -0.10 -1.10 6.72 -25.90 -0.17 -1.27 16
17 C -0.14 -2.16 6.74 -23.32 -0.16 -2.31 16
18 C 0.20 3.57 3.41 -67.71 -0.23 3.34 16
19 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16
20 N -0.74 -16.87 4.91 -53.21 -0.26 -17.13 16
21 C -0.24 -6.71 10.44 -15.06 -0.16 -6.87 16
22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16
23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16
24 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16
25 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16
26 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16
27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
28 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16
29 C -0.12 -1.81 2.41 -90.34 -0.22 -2.03 16
30 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16
31 C 0.13 1.98 6.83 -3.31 -0.02 1.95 16
32 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16
33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16
35 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16
36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
37 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16
38 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16
39 H 0.15 1.13 5.60 -52.49 -0.29 0.83 16
40 H 0.07 0.65 7.98 -51.93 -0.41 0.23 16
41 H 0.07 0.60 6.30 -51.93 -0.33 0.27 16
42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
44 H 0.07 1.28 7.98 -51.93 -0.41 0.86 16
45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
46 H 0.36 8.17 5.54 -40.82 -0.23 7.94 16
47 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16
48 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16
49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 392.98 15.07 5.92 5.92
Total: -1.00 -35.18 392.98 -8.99 -44.17
By element:
Atomic # 1 Polarization: 12.72 SS G_CDS: -7.58 Total: 5.14 kcal
Atomic # 6 Polarization: 4.81 SS G_CDS: -1.99 Total: 2.82 kcal
Atomic # 7 Polarization: -60.61 SS G_CDS: -0.16 Total: -60.77 kcal
Atomic # 8 Polarization: -14.15 SS G_CDS: -0.47 Total: -14.61 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -35.18 -8.99 -44.17 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026371483.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.749 kcal
(2) G-P(sol) polarization free energy of solvation -35.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.565 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds