Wall clock time and date at job start Wed Apr 1 2020 04:22:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35425 * 116.99863 * 2 1
4 4 N 1.32239 * 119.80207 * 0.25414 * 3 2 1
5 5 C 1.31881 * 121.80010 * 180.28459 * 4 3 2
6 6 C 1.50697 * 119.40603 * 179.72186 * 5 4 3
7 7 C 1.38359 * 121.18432 * 359.74679 * 5 4 3
8 8 C 1.38335 * 119.46250 * 359.97438 * 7 5 4
9 9 C 1.39989 * 118.34557 * 359.97438 * 8 7 5
10 10 C 1.47522 * 120.59500 * 180.02562 * 9 8 7
11 11 O 1.21587 * 120.00221 * 221.42046 * 10 9 8
12 12 N 1.34782 * 119.99878 * 41.42336 * 10 9 8
13 13 C 1.49207 * 126.05755 * 355.16613 * 12 10 9
14 14 C 1.50361 * 104.86167 * 172.91782 * 13 12 10
15 15 H 1.08997 * 109.72888 * 279.05383 * 14 13 12
16 16 C 1.50997 * 125.53939 * 144.29889 * 14 13 12
17 17 C 1.56413 * 101.59301 * 203.99533 * 16 14 13
18 18 C 1.55941 * 105.78327 * 25.02268 * 17 16 14
19 19 H 1.08998 * 110.49467 * 248.87020 * 18 17 16
20 20 N 1.46503 * 110.60665 * 126.26356 * 18 17 16
21 21 C 1.36941 * 119.99721 * 90.19959 * 20 18 17
22 22 H 1.07992 * 120.00008 * 359.97438 * 21 20 18
23 23 C 1.38814 * 119.99472 * 180.02562 * 21 20 18
24 24 N 1.31625 * 119.99782 * 179.97438 * 23 21 20
25 25 Si 1.86796 * 120.00198 * 359.97438 * 23 21 20
26 26 H 1.48494 * 109.47052 * 90.00673 * 25 23 21
27 27 H 1.48500 * 109.47005 * 210.00183 * 25 23 21
28 28 H 1.48495 * 109.47522 * 330.00382 * 25 23 21
29 29 C 1.50289 * 104.15853 * 7.54004 * 18 17 16
30 30 H 1.08998 * 109.99143 * 80.47413 * 29 18 17
31 31 C 1.49696 * 126.05594 * 175.14424 * 12 10 9
32 32 H 1.08997 * 109.47307 * 59.99813 * 1 2 3
33 33 H 1.09000 * 109.46912 * 179.97438 * 1 2 3
34 34 H 1.08995 * 109.47364 * 299.99652 * 1 2 3
35 35 H 1.09007 * 109.47174 * 270.02406 * 6 5 4
36 36 H 1.08994 * 109.46991 * 30.02029 * 6 5 4
37 37 H 1.08994 * 109.47350 * 150.02621 * 6 5 4
38 38 H 1.08007 * 120.26579 * 179.97438 * 7 5 4
39 39 H 1.07994 * 120.82720 * 180.02562 * 8 7 5
40 40 H 1.09001 * 110.36694 * 54.06802 * 13 12 10
41 41 H 1.09000 * 110.36202 * 291.75818 * 13 12 10
42 42 H 1.08992 * 111.01138 * 322.07222 * 16 14 13
43 43 H 1.09003 * 111.00057 * 85.92532 * 16 14 13
44 44 H 1.08994 * 110.18625 * 144.09964 * 17 16 14
45 45 H 1.09000 * 110.18368 * 265.94330 * 17 16 14
46 46 H 0.96999 * 120.00105 * 270.19910 * 20 18 17
47 47 H 0.96993 * 119.99957 * 179.97438 * 24 23 21
48 48 H 1.09002 * 110.85071 * 36.68548 * 31 12 10
49 49 H 1.09002 * 110.84115 * 273.07378 * 31 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0437 1.2067 0.0000
4 7 1.3197 2.3132 0.0051
5 6 1.8770 3.5084 -0.0003
6 6 0.9999 4.7338 -0.0004
7 6 3.2525 3.6575 -0.0063
8 6 4.0587 2.5334 -0.0062
9 6 3.4449 1.2752 0.0007
10 6 4.2570 0.0436 0.0017
11 8 3.9296 -0.9010 -0.6903
12 7 5.3617 -0.0345 0.7698
13 6 5.9422 1.0698 1.5882
14 6 7.0455 0.4241 2.3800
15 1 6.6265 -0.0831 3.2490
16 6 8.3607 1.0715 2.7422
17 6 9.2775 -0.1775 2.9562
18 6 8.6427 -1.3203 2.1059
19 1 8.2238 -2.0903 2.7537
20 7 9.6357 -1.9000 1.1981
21 6 10.3989 -2.9614 1.6059
22 1 10.2691 -3.3708 2.5967
23 6 11.3402 -3.5104 0.7459
24 7 12.0741 -4.5302 1.1379
25 14 11.5652 -2.8017 -0.9677
26 1 12.5914 -1.7291 -0.9289
27 1 12.0066 -3.8757 -1.8934
28 1 10.2767 -2.2371 -1.4431
29 6 7.5534 -0.6377 1.3275
30 1 7.9769 -0.1288 0.4616
31 6 6.2235 -1.2447 0.9533
32 1 -0.3634 0.5138 -0.8899
33 1 -0.3633 -1.0277 -0.0005
34 1 -0.3634 0.5137 0.8900
35 1 0.7842 5.0262 -1.0281
36 1 0.0668 4.5128 0.5178
37 1 1.5141 5.5488 0.5088
38 1 3.6932 4.6436 -0.0111
39 1 5.1349 2.6241 -0.0104
40 1 5.1875 1.4834 2.2571
41 1 6.3455 1.8493 0.9418
42 1 8.7294 1.6912 1.9249
43 1 8.2706 1.6519 3.6605
44 1 10.2883 0.0337 2.6075
45 1 9.2929 -0.4566 4.0098
46 1 9.7526 -1.5321 0.3083
47 1 12.7316 -4.9140 0.5369
48 1 6.3024 -1.8093 0.0242
49 1 5.8434 -1.8729 1.7590
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026371483.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:15
Heat of formation + Delta-G solvation = -20.414173 kcal
Electronic energy + Delta-G solvation = -30558.333772 eV
Core-core repulsion = 26485.913245 eV
Total energy + Delta-G solvation = -4072.420526 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-42.20495 -41.41229 -39.62076 -39.13857 -36.91910 -35.18628 -34.22245 -33.07688
-32.79793 -30.95897 -30.13007 -29.32446 -27.89043 -27.08268 -24.93331 -24.51699
-24.02360 -23.36827 -21.55466 -20.95697 -20.57390 -19.58556 -19.22519 -18.27084
-18.04576 -17.58826 -17.08698 -16.64371 -16.35185 -16.06632 -15.96342 -15.50130
-15.31974 -15.07053 -15.01390 -14.80323 -14.71819 -14.48509 -14.11870 -13.77473
-13.52216 -13.43746 -13.33017 -13.22146 -13.07470 -12.95500 -12.75129 -12.62512
-12.33851 -12.30011 -12.13865 -12.06912 -11.83588 -11.59224 -11.39261 -11.31811
-11.06085 -10.98753 -10.89870 -10.65179 -9.83652 -9.48647 -9.28998 -8.01911
-5.34286 -0.32641 0.19643 1.36439 1.39639 1.46341 1.55821 1.75647
2.01784 2.47900 2.62969 2.89271 3.07564 3.30500 3.49169 3.52025
3.67522 3.85126 3.88218 3.95568 4.12424 4.18575 4.25782 4.31736
4.33089 4.34236 4.41638 4.46658 4.53843 4.62465 4.65307 4.67154
4.72414 4.76068 4.82318 4.88751 4.90987 4.94080 4.97741 5.06186
5.14170 5.17858 5.24953 5.34697 5.47362 5.52972 5.55137 5.79849
6.13016 6.23123 6.37032 6.71727 7.00516 7.08700 7.85927 8.03441
9.19757
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.017254 B = 0.002551 C = 0.002417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1622.447554 B =10972.580261 C =11581.768115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.318 6.318
3 C 0.349 3.651
4 N -0.556 5.556
5 C 0.180 3.820
6 C -0.105 4.105
7 C -0.201 4.201
8 C -0.005 4.005
9 C -0.230 4.230
10 C 0.580 3.420
11 O -0.578 6.578
12 N -0.619 5.619
13 C 0.120 3.880
14 C -0.106 4.106
15 H 0.086 0.914
16 C -0.080 4.080
17 C -0.138 4.138
18 C 0.190 3.810
19 H 0.047 0.953
20 N -0.749 5.749
21 C -0.224 4.224
22 H 0.058 0.942
23 C -0.066 4.066
24 N -0.985 5.985
25 Si 0.952 3.048
26 H -0.274 1.274
27 H -0.300 1.300
28 H -0.258 1.258
29 C -0.124 4.124
30 H 0.079 0.921
31 C 0.129 3.871
32 H 0.062 0.938
33 H 0.111 0.889
34 H 0.066 0.934
35 H 0.095 0.905
36 H 0.075 0.925
37 H 0.110 0.890
38 H 0.186 0.814
39 H 0.172 0.828
40 H 0.095 0.905
41 H 0.098 0.902
42 H 0.079 0.921
43 H 0.094 0.906
44 H 0.055 0.945
45 H 0.063 0.937
46 H 0.364 0.636
47 H 0.256 0.744
48 H 0.054 0.946
49 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.333 27.095 1.273 35.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.223 6.223
3 C 0.170 3.830
4 N -0.281 5.281
5 C 0.042 3.958
6 C -0.162 4.162
7 C -0.221 4.221
8 C -0.030 4.030
9 C -0.236 4.236
10 C 0.369 3.631
11 O -0.458 6.458
12 N -0.353 5.353
13 C 0.000 4.000
14 C -0.125 4.125
15 H 0.105 0.895
16 C -0.118 4.118
17 C -0.179 4.179
18 C 0.081 3.919
19 H 0.066 0.934
20 N -0.392 5.392
21 C -0.355 4.355
22 H 0.076 0.924
23 C -0.257 4.257
24 N -0.635 5.635
25 Si 0.780 3.220
26 H -0.200 1.200
27 H -0.227 1.227
28 H -0.183 1.183
29 C -0.144 4.144
30 H 0.097 0.903
31 C 0.007 3.993
32 H 0.080 0.920
33 H 0.130 0.870
34 H 0.085 0.915
35 H 0.113 0.887
36 H 0.094 0.906
37 H 0.129 0.871
38 H 0.204 0.796
39 H 0.189 0.811
40 H 0.113 0.887
41 H 0.116 0.884
42 H 0.098 0.902
43 H 0.113 0.887
44 H 0.074 0.926
45 H 0.082 0.918
46 H 0.197 0.803
47 H 0.065 0.935
48 H 0.073 0.927
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -24.334 26.056 1.008 35.666
hybrid contribution 1.193 -0.994 -1.168 1.943
sum -23.141 25.062 -0.159 34.113
Atomic orbital electron populations
1.23085 0.75572 1.04418 1.02710 1.86366 1.24664 1.24803 1.86514
1.19909 0.88272 0.85241 0.89564 1.67314 1.40404 0.98616 1.21803
1.21954 0.93666 0.91996 0.88142 1.20948 0.98923 0.91746 1.04592
1.22196 0.93081 1.01109 1.05706 1.22099 1.02375 0.89058 0.89448
1.19787 0.91198 0.95165 1.17480 1.17916 0.79470 0.87069 0.78622
1.90783 1.70943 1.40834 1.43213 1.49749 1.25496 1.14002 1.46036
1.21673 0.95604 0.88876 0.93867 1.22165 0.95374 0.97476 0.97523
0.89517 1.21677 0.91168 0.96023 1.02965 1.23570 0.99431 0.95133
0.99729 1.20335 0.87091 0.93628 0.90840 0.93443 1.42881 1.44066
1.37393 1.14839 1.19042 1.11697 1.05902 0.98841 0.92353 1.25463
0.99093 0.98811 1.02312 1.69878 1.27829 1.28017 1.37820 0.85450
0.78529 0.77510 0.80520 1.20032 1.22745 1.18289 1.22315 0.93582
0.98896 0.99615 0.90285 1.21383 0.89611 0.87453 1.00855 0.91975
0.87031 0.91487 0.88692 0.90562 0.87142 0.79631 0.81091 0.88657
0.88364 0.90188 0.88727 0.92620 0.91810 0.80283 0.93487 0.92735
0.91044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.71 10.38 113.37 1.18 1.88 16
2 O -0.32 -9.20 9.30 -72.92 -0.68 -9.88 16
3 C 0.35 9.13 7.48 85.13 0.64 9.77 16
4 N -0.56 -11.56 9.11 -296.05 -2.70 -14.26 16
5 C 0.18 2.43 6.78 42.58 0.29 2.72 16
6 C -0.11 -0.59 10.16 71.23 0.72 0.14 16
7 C -0.20 -2.05 9.71 22.32 0.22 -1.83 16
8 C 0.00 -0.07 8.57 22.72 0.19 0.12 16
9 C -0.23 -5.69 5.56 -19.91 -0.11 -5.80 16
10 C 0.58 18.27 7.32 86.69 0.63 18.91 16
11 O -0.58 -23.90 16.52 10.30 0.17 -23.73 16
12 N -0.62 -16.46 3.43 -818.85 -2.81 -19.26 16
13 C 0.12 2.00 5.18 85.00 0.44 2.44 16
14 C -0.11 -2.05 2.77 -10.56 -0.03 -2.08 16
15 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
16 C -0.08 -1.45 6.72 31.13 0.21 -1.24 16
17 C -0.14 -3.95 6.74 32.80 0.22 -3.73 16
18 C 0.19 6.70 3.41 45.13 0.15 6.86 16
19 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16
20 N -0.75 -34.21 4.91 -322.26 -1.58 -35.80 16
21 C -0.22 -12.66 10.44 84.03 0.88 -11.78 16
22 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16
23 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16
24 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16
25 Si 0.95 46.32 27.74 68.60 1.90 48.22 16
26 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
27 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16
28 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16
29 C -0.12 -3.53 2.41 -10.61 -0.03 -3.55 16
30 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16
31 C 0.13 3.98 6.83 85.08 0.58 4.56 16
32 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16
33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16
34 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16
35 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16
36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16
37 H 0.11 0.01 8.07 -2.39 -0.02 -0.01 16
38 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16
39 H 0.17 1.68 5.60 -2.91 -0.02 1.67 16
40 H 0.10 1.25 7.98 -2.39 -0.02 1.23 16
41 H 0.10 1.14 6.30 -2.39 -0.02 1.12 16
42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
44 H 0.05 1.82 7.98 -2.39 -0.02 1.81 16
45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
46 H 0.36 16.20 5.54 -92.71 -0.51 15.68 16
47 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16
48 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16
49 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16
Total: -1.00 -83.70 392.98 1.66 -82.04
By element:
Atomic # 1 Polarization: 21.73 SS G_CDS: 0.39 Total: 22.12 kcal
Atomic # 6 Polarization: 7.31 SS G_CDS: 6.66 Total: 13.97 kcal
Atomic # 7 Polarization: -125.96 SS G_CDS: -6.78 Total: -132.75 kcal
Atomic # 8 Polarization: -33.10 SS G_CDS: -0.51 Total: -33.60 kcal
Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal
Total: -83.70 1.66 -82.04 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026371483.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.626 kcal
(2) G-P(sol) polarization free energy of solvation -83.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.414 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds