Wall clock time and date at job start Wed Apr 1 2020 04:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38360 * 119.40961 * 2 1 4 4 C 1.38338 * 119.45713 * 179.97438 * 3 2 1 5 5 C 1.39985 * 118.35051 * 359.97438 * 4 3 2 6 6 C 1.47523 * 120.59767 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00249 * 214.69203 * 6 5 4 8 8 N 1.34783 * 119.99877 * 34.68446 * 6 5 4 9 9 C 1.46930 * 120.55263 * 184.73821 * 8 6 5 10 10 C 1.53345 * 108.68432 * 125.63254 * 9 8 6 11 11 C 1.52105 * 109.44327 * 53.30452 * 10 9 8 12 12 C 1.54389 * 110.50922 * 64.08687 * 11 10 9 13 13 C 1.54461 * 102.86862 * 83.33048 * 12 11 10 14 14 N 1.47085 * 107.29472 * 21.50764 * 13 12 11 15 15 C 1.36932 * 125.63048 * 180.96632 * 14 13 12 16 16 H 1.07998 * 120.00284 * 186.90317 * 15 14 13 17 17 C 1.38816 * 119.99809 * 6.89930 * 15 14 13 18 18 N 1.31621 * 120.00029 * 206.98625 * 17 15 14 19 19 Si 1.86800 * 120.00039 * 26.98373 * 17 15 14 20 20 H 1.48496 * 109.47141 * 275.39414 * 19 17 15 21 21 H 1.48495 * 109.46966 * 35.39457 * 19 17 15 22 22 H 1.48497 * 109.47240 * 155.39415 * 19 17 15 23 23 C 1.47578 * 108.74475 * 1.22775 * 14 13 12 24 24 C 1.52103 * 111.59917 * 300.69448 * 11 10 9 25 25 C 1.46928 * 120.55072 * 4.72057 * 8 6 5 26 26 C 1.40286 * 118.80610 * 0.27433 * 5 4 3 27 27 O 1.35428 * 119.79863 * 179.70230 * 26 5 4 28 28 N 1.31882 * 119.40648 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46535 * 90.00366 * 1 2 3 30 30 H 1.08998 * 109.47132 * 209.99911 * 1 2 3 31 31 H 1.08994 * 109.47062 * 330.00764 * 1 2 3 32 32 H 1.07994 * 120.26514 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.81775 * 180.02562 * 4 3 2 34 34 H 1.09006 * 109.60141 * 5.87577 * 9 8 6 35 35 H 1.08996 * 109.60732 * 245.39537 * 9 8 6 36 36 H 1.08999 * 109.47412 * 293.31349 * 10 9 8 37 37 H 1.08995 * 109.47804 * 173.30062 * 10 9 8 38 38 H 1.09007 * 110.73510 * 324.99249 * 12 11 10 39 39 H 1.08991 * 110.73432 * 201.67552 * 12 11 10 40 40 H 1.09000 * 109.88339 * 262.08598 * 13 12 11 41 41 H 1.08994 * 109.87596 * 140.92895 * 13 12 11 42 42 H 0.97004 * 119.99891 * 5.11106 * 18 17 15 43 43 H 1.09004 * 110.37510 * 95.26066 * 23 14 13 44 44 H 1.08997 * 110.37620 * 217.61056 * 23 14 13 45 45 H 1.09001 * 109.47483 * 179.29280 * 24 11 10 46 46 H 1.08997 * 109.47912 * 299.31125 * 24 11 10 47 47 H 1.09003 * 109.60265 * 354.12831 * 25 8 6 48 48 H 1.09003 * 109.59606 * 114.60352 * 25 8 6 49 49 H 0.96700 * 113.99954 * 90.00198 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 0.0005 5 6 4.2355 -0.0250 0.0016 6 6 5.7097 -0.0816 0.0028 7 8 6.2845 -0.9703 -0.5957 8 7 6.4194 0.8520 0.6672 9 6 7.8867 0.8686 0.5917 10 6 8.3394 2.2611 0.1364 11 6 7.7235 3.3155 1.0434 12 6 8.2471 3.1595 2.4873 13 6 9.5930 3.9163 2.4489 14 7 9.5389 4.8472 1.3113 15 6 10.5451 5.6905 0.9221 16 1 10.3699 6.4162 0.1417 17 6 11.7903 5.6128 1.5308 18 7 12.5646 6.6758 1.5834 19 14 12.3669 3.9994 2.2752 20 1 11.8333 3.8723 3.6551 21 1 11.8746 2.8687 1.4480 22 1 13.8511 3.9748 2.3142 23 6 8.2190 4.7267 0.6624 24 6 6.2038 3.2570 1.0184 25 6 5.7386 1.8703 1.4787 26 6 3.4757 -1.2042 -0.0038 27 8 4.0991 -2.4065 -0.0089 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6411 2.1375 0.0004 33 1 4.1223 2.1344 0.0010 34 1 8.2244 0.1213 -0.1265 35 1 8.3059 0.6508 1.5739 36 1 8.0154 2.4309 -0.8904 37 1 9.4261 2.3255 0.1899 38 1 8.4025 2.1082 2.7301 39 1 7.5635 3.6238 3.1979 40 1 10.4117 3.2100 2.3111 41 1 9.7323 4.4720 3.3761 42 1 12.2367 7.5310 1.2640 43 1 7.5375 5.4869 1.0444 44 1 8.3186 4.8142 -0.4195 45 1 5.7999 4.0166 1.6877 46 1 5.8497 3.4409 0.0041 47 1 4.6603 1.7833 1.3453 48 1 5.9920 1.7297 2.5295 49 1 4.2799 -2.7596 0.8729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035230045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:04 Heat of formation + Delta-G solvation = 12.625526 kcal Electronic energy + Delta-G solvation = -31330.018212 eV Core-core repulsion = 27259.030395 eV Total energy + Delta-G solvation = -4070.987818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49772 -40.18054 -38.68434 -37.61261 -36.08553 -33.99183 -33.01975 -32.04435 -31.37074 -31.04501 -29.07628 -28.51071 -27.08920 -24.29655 -24.13478 -23.27620 -23.00680 -22.67651 -20.71887 -20.24239 -18.96153 -18.43345 -17.64100 -17.29270 -17.00359 -16.55149 -15.90102 -15.56383 -15.35924 -14.98188 -14.80345 -14.58228 -14.43415 -13.95178 -13.88488 -13.57985 -13.39878 -13.14787 -13.03328 -12.94916 -12.62952 -12.54398 -12.42319 -12.30286 -11.98871 -11.86968 -11.43622 -11.22340 -11.17506 -10.98208 -10.64037 -10.41945 -10.40700 -10.36745 -10.07677 -9.97502 -9.64520 -9.53692 -9.23666 -9.12882 -8.69795 -8.50201 -7.06731 -6.36184 -3.17393 0.22805 0.64538 2.50657 2.72244 3.06403 3.31084 3.41989 3.50203 3.68639 4.01208 4.15770 4.26141 4.48820 4.58101 4.62123 4.67524 4.75443 4.87038 4.90902 4.95636 5.07472 5.08757 5.11074 5.16433 5.23918 5.38941 5.42430 5.44719 5.50180 5.51648 5.62704 5.64083 5.70827 5.74234 5.87013 5.90217 5.96342 6.01113 6.19197 6.26194 6.30205 6.46843 6.50836 6.59543 6.70092 6.79101 7.10719 7.21810 7.44620 7.68258 7.97671 8.33186 9.02269 9.58103 10.24925 11.13520 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.002676 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.023367 B =10462.534620 C =11190.625029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.172 3.828 3 C -0.191 4.191 4 C -0.034 4.034 5 C -0.205 4.205 6 C 0.562 3.438 7 O -0.519 6.519 8 N -0.601 5.601 9 C 0.113 3.887 10 C -0.114 4.114 11 C -0.073 4.073 12 C -0.121 4.121 13 C 0.114 3.886 14 N -0.608 5.608 15 C -0.329 4.329 16 H 0.077 0.923 17 C -0.016 4.016 18 N -0.916 5.916 19 Si 1.059 2.941 20 H -0.295 1.295 21 H -0.293 1.293 22 H -0.301 1.301 23 C 0.148 3.852 24 C -0.119 4.119 25 C 0.082 3.918 26 C 0.369 3.631 27 O -0.462 6.462 28 N -0.508 5.508 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.037 0.963 42 H 0.263 0.737 43 H 0.025 0.975 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.098 0.902 48 H 0.074 0.926 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.955 -12.385 1.018 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.034 3.966 3 C -0.211 4.211 4 C -0.060 4.060 5 C -0.211 4.211 6 C 0.349 3.651 7 O -0.395 6.395 8 N -0.334 5.334 9 C -0.009 4.009 10 C -0.152 4.152 11 C -0.074 4.074 12 C -0.159 4.159 13 C -0.011 4.011 14 N -0.336 5.336 15 C -0.456 4.456 16 H 0.095 0.905 17 C -0.217 4.217 18 N -0.557 5.557 19 Si 0.893 3.107 20 H -0.223 1.223 21 H -0.221 1.221 22 H -0.229 1.229 23 C 0.022 3.978 24 C -0.158 4.158 25 C -0.040 4.040 26 C 0.190 3.810 27 O -0.268 6.268 28 N -0.228 5.228 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.115 0.885 48 H 0.092 0.908 49 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -23.679 -14.283 0.796 27.665 hybrid contribution -0.680 1.508 -0.242 1.672 sum -24.359 -12.776 0.554 27.512 Atomic orbital electron populations 1.20837 0.88059 1.04023 1.03711 1.21289 0.97121 0.87185 0.91001 1.21957 0.94415 0.99731 1.04980 1.22049 0.94593 0.97652 0.91687 1.21052 0.95137 0.94465 1.10473 1.17860 0.85944 0.81873 0.79436 1.90834 1.71034 1.34233 1.43387 1.48004 1.07436 1.29843 1.48154 1.21783 0.77928 0.98717 1.02457 1.21675 1.02187 0.92468 0.98877 1.21130 0.93270 0.97174 0.95860 1.22638 0.97611 0.99957 0.95712 1.21711 0.94986 0.92337 0.92078 1.44817 1.12351 1.46013 1.30396 1.20029 0.91434 1.12256 1.21839 0.90482 1.25710 0.93071 1.03912 0.99006 1.70886 1.40637 0.99451 1.44696 0.83932 0.74763 0.76273 0.75743 1.22315 1.22087 1.22905 1.21562 0.87965 0.91831 0.96469 1.21764 0.96144 0.95812 1.02035 1.22466 0.98174 0.87875 0.95493 1.19075 0.86126 0.84877 0.90964 1.84800 1.76480 1.32077 1.33476 1.67122 1.09236 1.30479 1.15978 0.89732 0.90044 0.90006 0.83529 0.82454 0.88927 0.91041 0.91687 0.89423 0.91483 0.91409 0.95321 0.94473 0.92677 0.95718 0.93949 0.90121 0.91489 0.88470 0.90813 0.73939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.16 36.01 0.37 -0.14 16 2 C 0.17 1.38 6.78 -82.53 -0.56 0.82 16 3 C -0.19 -1.27 9.71 -39.50 -0.38 -1.66 16 4 C -0.03 -0.28 7.52 -38.89 -0.29 -0.57 16 5 C -0.20 -2.27 5.45 -104.69 -0.57 -2.84 16 6 C 0.56 7.45 7.28 -12.47 -0.09 7.36 16 7 O -0.52 -8.78 15.36 -12.50 -0.19 -8.97 16 8 N -0.60 -7.05 2.96 -173.80 -0.51 -7.56 16 9 C 0.11 1.48 6.11 -3.63 -0.02 1.45 16 10 C -0.11 -1.68 4.87 -27.01 -0.13 -1.81 16 11 C -0.07 -1.05 0.55 -153.99 -0.08 -1.13 16 12 C -0.12 -1.83 4.92 -25.24 -0.12 -1.95 16 13 C 0.11 2.37 4.53 -2.96 -0.01 2.36 16 14 N -0.61 -14.33 3.31 -170.17 -0.56 -14.89 16 15 C -0.33 -9.24 10.44 -15.06 -0.16 -9.40 16 16 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 17 C -0.02 -0.48 5.44 -17.43 -0.09 -0.57 16 18 N -0.92 -28.54 13.70 55.49 0.76 -27.78 16 19 Si 1.06 26.57 24.63 -169.99 -4.19 22.38 16 20 H -0.30 -6.99 6.66 56.52 0.38 -6.61 16 21 H -0.29 -6.93 6.59 56.52 0.37 -6.56 16 22 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 23 C 0.15 2.75 6.16 -2.75 -0.02 2.73 16 24 C -0.12 -1.22 4.52 -27.01 -0.12 -1.34 16 25 C 0.08 0.75 5.29 -3.63 -0.02 0.73 16 26 C 0.37 4.31 7.74 -16.61 -0.13 4.19 16 27 O -0.46 -5.42 12.20 -35.76 -0.44 -5.86 16 28 N -0.51 -5.51 10.28 -9.21 -0.09 -5.61 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 32 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.16 1.07 5.15 -52.49 -0.27 0.80 16 34 H 0.09 1.31 7.02 -51.93 -0.36 0.95 16 35 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.54 7.81 -51.93 -0.41 1.13 16 38 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 39 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 40 H 0.03 0.65 3.66 -51.93 -0.19 0.46 16 41 H 0.04 0.83 7.63 -51.93 -0.40 0.43 16 42 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 43 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 44 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 45 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 46 H 0.07 0.65 7.63 -51.93 -0.40 0.26 16 47 H 0.10 0.71 3.49 -51.93 -0.18 0.53 16 48 H 0.07 0.64 7.62 -51.93 -0.40 0.25 16 49 H 0.40 2.77 9.06 45.56 0.41 3.18 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -36.36 371.50 -8.33 -44.69 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.25 Total: -0.20 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.45 Total: -1.79 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.41 Total: -55.83 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.63 Total: -14.83 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.19 Total: 22.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.36 -8.33 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035230045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.311 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds