Wall clock time and date at job start Wed Apr 1 2020 04:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38360 * 119.40961 * 2 1 4 4 C 1.38338 * 119.45713 * 179.97438 * 3 2 1 5 5 C 1.39985 * 118.35051 * 359.97438 * 4 3 2 6 6 C 1.47523 * 120.59767 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00249 * 214.69203 * 6 5 4 8 8 N 1.34783 * 119.99877 * 34.68446 * 6 5 4 9 9 C 1.46930 * 120.55263 * 184.73821 * 8 6 5 10 10 C 1.53345 * 108.68432 * 125.63254 * 9 8 6 11 11 C 1.52105 * 109.44327 * 53.30452 * 10 9 8 12 12 C 1.54389 * 110.50922 * 64.08687 * 11 10 9 13 13 C 1.54461 * 102.86862 * 83.33048 * 12 11 10 14 14 N 1.47085 * 107.29472 * 21.50764 * 13 12 11 15 15 C 1.36932 * 125.63048 * 180.96632 * 14 13 12 16 16 H 1.07998 * 120.00284 * 186.90317 * 15 14 13 17 17 C 1.38816 * 119.99809 * 6.89930 * 15 14 13 18 18 N 1.31621 * 120.00029 * 206.98625 * 17 15 14 19 19 Si 1.86800 * 120.00039 * 26.98373 * 17 15 14 20 20 H 1.48496 * 109.47141 * 275.39414 * 19 17 15 21 21 H 1.48495 * 109.46966 * 35.39457 * 19 17 15 22 22 H 1.48497 * 109.47240 * 155.39415 * 19 17 15 23 23 C 1.47578 * 108.74475 * 1.22775 * 14 13 12 24 24 C 1.52103 * 111.59917 * 300.69448 * 11 10 9 25 25 C 1.46928 * 120.55072 * 4.72057 * 8 6 5 26 26 C 1.40286 * 118.80610 * 0.27433 * 5 4 3 27 27 O 1.35428 * 119.79863 * 179.70230 * 26 5 4 28 28 N 1.31882 * 119.40648 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46535 * 90.00366 * 1 2 3 30 30 H 1.08998 * 109.47132 * 209.99911 * 1 2 3 31 31 H 1.08994 * 109.47062 * 330.00764 * 1 2 3 32 32 H 1.07994 * 120.26514 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.81775 * 180.02562 * 4 3 2 34 34 H 1.09006 * 109.60141 * 5.87577 * 9 8 6 35 35 H 1.08996 * 109.60732 * 245.39537 * 9 8 6 36 36 H 1.08999 * 109.47412 * 293.31349 * 10 9 8 37 37 H 1.08995 * 109.47804 * 173.30062 * 10 9 8 38 38 H 1.09007 * 110.73510 * 324.99249 * 12 11 10 39 39 H 1.08991 * 110.73432 * 201.67552 * 12 11 10 40 40 H 1.09000 * 109.88339 * 262.08598 * 13 12 11 41 41 H 1.08994 * 109.87596 * 140.92895 * 13 12 11 42 42 H 0.97004 * 119.99891 * 5.11106 * 18 17 15 43 43 H 1.09004 * 110.37510 * 95.26066 * 23 14 13 44 44 H 1.08997 * 110.37620 * 217.61056 * 23 14 13 45 45 H 1.09001 * 109.47483 * 179.29280 * 24 11 10 46 46 H 1.08997 * 109.47912 * 299.31125 * 24 11 10 47 47 H 1.09003 * 109.60265 * 354.12831 * 25 8 6 48 48 H 1.09003 * 109.59606 * 114.60352 * 25 8 6 49 49 H 0.96700 * 113.99954 * 90.00198 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 0.0005 5 6 4.2355 -0.0250 0.0016 6 6 5.7097 -0.0816 0.0028 7 8 6.2845 -0.9703 -0.5957 8 7 6.4194 0.8520 0.6672 9 6 7.8867 0.8686 0.5917 10 6 8.3394 2.2611 0.1364 11 6 7.7235 3.3155 1.0434 12 6 8.2471 3.1595 2.4873 13 6 9.5930 3.9163 2.4489 14 7 9.5389 4.8472 1.3113 15 6 10.5451 5.6905 0.9221 16 1 10.3699 6.4162 0.1417 17 6 11.7903 5.6128 1.5308 18 7 12.5646 6.6758 1.5834 19 14 12.3669 3.9994 2.2752 20 1 11.8333 3.8723 3.6551 21 1 11.8746 2.8687 1.4480 22 1 13.8511 3.9748 2.3142 23 6 8.2190 4.7267 0.6624 24 6 6.2038 3.2570 1.0184 25 6 5.7386 1.8703 1.4787 26 6 3.4757 -1.2042 -0.0038 27 8 4.0991 -2.4065 -0.0089 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6411 2.1375 0.0004 33 1 4.1223 2.1344 0.0010 34 1 8.2244 0.1213 -0.1265 35 1 8.3059 0.6508 1.5739 36 1 8.0154 2.4309 -0.8904 37 1 9.4261 2.3255 0.1899 38 1 8.4025 2.1082 2.7301 39 1 7.5635 3.6238 3.1979 40 1 10.4117 3.2100 2.3111 41 1 9.7323 4.4720 3.3761 42 1 12.2367 7.5310 1.2640 43 1 7.5375 5.4869 1.0444 44 1 8.3186 4.8142 -0.4195 45 1 5.7999 4.0166 1.6877 46 1 5.8497 3.4409 0.0041 47 1 4.6603 1.7833 1.3453 48 1 5.9920 1.7297 2.5295 49 1 4.2799 -2.7596 0.8729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035230045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:03 Heat of formation + Delta-G solvation = -15.724562 kcal Electronic energy + Delta-G solvation = -31331.247564 eV Core-core repulsion = 27259.030395 eV Total energy + Delta-G solvation = -4072.217170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.30455 -41.15786 -39.81037 -38.39046 -37.34204 -35.16676 -34.35746 -32.95851 -32.62376 -32.02350 -30.60082 -29.30413 -28.28502 -25.58625 -25.15302 -24.29958 -24.00880 -23.53650 -22.23598 -21.41549 -19.90323 -19.68241 -19.00139 -18.25719 -18.03714 -17.35755 -17.12020 -16.75647 -16.56294 -15.98943 -15.67754 -15.57709 -15.47840 -15.23483 -15.04439 -14.80732 -14.46202 -14.36160 -14.23914 -13.73528 -13.64407 -13.52250 -13.17891 -13.07209 -13.00649 -12.97418 -12.79664 -12.65463 -12.58569 -12.21131 -12.06982 -11.71507 -11.63560 -11.59208 -11.26935 -11.22595 -11.00804 -10.76781 -10.64081 -10.41453 -9.92787 -9.62634 -9.07413 -8.66719 -5.38081 -0.45080 0.03493 1.37973 1.49385 1.63341 1.68334 1.83780 2.41486 2.53278 2.63325 3.02591 3.27883 3.39087 3.53826 3.59428 3.66839 3.73043 3.79731 3.93522 4.04617 4.08077 4.18623 4.28519 4.34540 4.39073 4.42409 4.55877 4.62174 4.66644 4.68421 4.73134 4.78985 4.82326 4.87689 4.90736 4.92255 5.02295 5.03665 5.08894 5.09462 5.15664 5.24938 5.36142 5.40980 5.51184 5.53714 5.60949 6.12385 6.28714 6.50401 6.81874 6.84234 7.03215 7.51259 8.15564 8.85144 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.002676 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.023367 B =10462.534620 C =11190.625029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.165 3.835 3 C -0.175 4.175 4 C -0.032 4.032 5 C -0.222 4.222 6 C 0.562 3.438 7 O -0.567 6.567 8 N -0.596 5.596 9 C 0.120 3.880 10 C -0.109 4.109 11 C -0.060 4.060 12 C -0.109 4.109 13 C 0.103 3.897 14 N -0.630 5.630 15 C -0.315 4.315 16 H 0.045 0.955 17 C -0.075 4.075 18 N -0.955 5.955 19 Si 1.102 2.898 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.312 1.312 23 C 0.141 3.859 24 C -0.113 4.113 25 C 0.083 3.917 26 C 0.350 3.650 27 O -0.485 6.485 28 N -0.533 5.533 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.188 0.812 33 H 0.178 0.822 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.019 0.981 41 H 0.022 0.978 42 H 0.250 0.750 43 H 0.038 0.962 44 H 0.028 0.972 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.044 -12.919 2.500 31.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.027 3.973 3 C -0.194 4.194 4 C -0.057 4.057 5 C -0.228 4.228 6 C 0.351 3.649 7 O -0.447 6.447 8 N -0.328 5.328 9 C -0.002 4.002 10 C -0.147 4.147 11 C -0.061 4.061 12 C -0.146 4.146 13 C -0.022 4.022 14 N -0.357 5.357 15 C -0.443 4.443 16 H 0.063 0.937 17 C -0.269 4.269 18 N -0.599 5.599 19 Si 0.931 3.069 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.241 1.241 23 C 0.017 3.983 24 C -0.151 4.151 25 C -0.038 4.038 26 C 0.171 3.829 27 O -0.294 6.294 28 N -0.254 5.254 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.206 0.794 33 H 0.195 0.805 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.125 0.875 46 H 0.095 0.905 47 H 0.141 0.859 48 H 0.108 0.892 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -27.839 -14.819 2.302 31.621 hybrid contribution 0.453 1.763 -0.801 1.989 sum -27.386 -13.055 1.501 30.376 Atomic orbital electron populations 1.20968 0.85759 1.05258 1.04521 1.21985 0.98689 0.87018 0.89603 1.22381 0.93808 1.00767 1.02467 1.22280 0.95410 0.96980 0.91014 1.20904 0.93593 0.95608 1.12731 1.18217 0.86920 0.81251 0.78528 1.90807 1.72142 1.36266 1.45494 1.48032 1.06708 1.30139 1.47943 1.21580 0.79194 0.96919 1.02500 1.21567 1.00195 0.93902 0.99043 1.21033 0.96296 0.93707 0.95045 1.22658 0.94655 1.00657 0.96629 1.21880 0.98308 0.91813 0.90162 1.44925 1.12914 1.45867 1.31978 1.19930 0.92796 1.11649 1.19945 0.93663 1.26863 0.93808 1.05842 1.00426 1.70984 1.41576 0.99598 1.47738 0.83359 0.73639 0.73219 0.76671 1.19764 1.20296 1.24126 1.21784 0.85974 0.95143 0.95436 1.21759 0.92350 0.97338 1.03627 1.22692 0.99430 0.85990 0.95693 1.19257 0.86678 0.84901 0.92043 1.84747 1.76808 1.32788 1.35064 1.67162 1.08920 1.32281 1.17061 0.88952 0.90632 0.87001 0.79445 0.80541 0.90623 0.89862 0.92204 0.92710 0.89183 0.88536 0.96380 0.95962 0.94155 0.94435 0.95344 0.87547 0.90516 0.85914 0.89232 0.72390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 71.24 0.72 0.12 16 2 C 0.17 2.08 6.78 42.58 0.29 2.37 16 3 C -0.18 -1.46 9.71 22.32 0.22 -1.25 16 4 C -0.03 -0.39 7.52 22.72 0.17 -0.21 16 5 C -0.22 -4.44 5.45 -19.91 -0.11 -4.55 16 6 C 0.56 14.12 7.28 86.69 0.63 14.75 16 7 O -0.57 -19.40 15.36 13.01 0.20 -19.20 16 8 N -0.60 -12.33 2.96 -822.05 -2.43 -14.77 16 9 C 0.12 2.95 6.11 86.41 0.53 3.48 16 10 C -0.11 -3.06 4.87 30.41 0.15 -2.91 16 11 C -0.06 -1.52 0.55 -51.85 -0.03 -1.55 16 12 C -0.11 -2.84 4.92 31.56 0.16 -2.68 16 13 C 0.10 4.10 4.53 86.76 0.39 4.50 16 14 N -0.63 -29.45 3.31 -692.30 -2.29 -31.74 16 15 C -0.31 -18.19 10.44 84.04 0.88 -17.32 16 16 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 17 C -0.08 -4.52 5.44 84.86 0.46 -4.06 16 18 N -0.96 -61.82 13.70 21.65 0.30 -61.53 16 19 Si 1.10 54.56 24.63 68.60 1.69 56.25 16 20 H -0.27 -12.24 6.66 99.48 0.66 -11.58 16 21 H -0.28 -12.71 6.59 99.48 0.66 -12.05 16 22 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 23 C 0.14 5.04 6.16 86.63 0.53 5.58 16 24 C -0.11 -1.73 4.52 30.41 0.14 -1.60 16 25 C 0.08 1.09 5.29 86.41 0.46 1.55 16 26 C 0.35 7.86 7.74 85.13 0.66 8.52 16 27 O -0.48 -11.59 12.20 -70.24 -0.86 -12.45 16 28 N -0.53 -10.71 10.28 -296.05 -3.04 -13.75 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 -0.03 8.07 -2.39 -0.02 -0.05 16 32 H 0.19 0.03 8.06 -2.91 -0.02 0.01 16 33 H 0.18 1.40 5.15 -2.91 -0.01 1.38 16 34 H 0.08 2.14 7.02 -2.38 -0.02 2.13 16 35 H 0.08 1.85 6.55 -2.39 -0.02 1.84 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.90 7.81 -2.39 -0.02 1.89 16 38 H 0.09 2.00 6.17 -2.38 -0.01 1.99 16 39 H 0.10 2.04 7.98 -2.39 -0.02 2.02 16 40 H 0.02 0.79 3.66 -2.39 -0.01 0.78 16 41 H 0.02 0.96 7.63 -2.39 -0.02 0.94 16 42 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 43 H 0.04 1.27 8.00 -2.38 -0.02 1.25 16 44 H 0.03 1.08 8.03 -2.39 -0.02 1.06 16 45 H 0.11 1.23 8.09 -2.39 -0.02 1.21 16 46 H 0.08 1.10 7.63 -2.39 -0.02 1.08 16 47 H 0.12 1.08 3.49 -2.39 -0.01 1.07 16 48 H 0.09 1.01 7.62 -2.39 -0.02 0.99 16 49 H 0.42 5.98 9.06 -74.06 -0.67 5.31 16 Total: -1.00 -85.58 371.50 0.00 -85.58 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.19 Total: 6.86 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.25 Total: 4.73 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -7.47 Total: -121.78 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.66 Total: -31.64 kcal Atomic # 14 Polarization: 54.56 SS G_CDS: 1.69 Total: 56.25 kcal Total: -85.58 0.00 -85.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035230045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.855 kcal (2) G-P(sol) polarization free energy of solvation -85.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds