Wall clock time and date at job start Wed Apr 1 2020 04:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35686 * 117.00137 * 2 1 4 4 C 1.38904 * 119.62331 * 180.25713 * 3 2 1 5 5 C 1.39566 * 118.94398 * 180.29320 * 4 3 2 6 6 C 1.48166 * 120.88867 * 179.73402 * 5 4 3 7 7 O 1.21513 * 119.99938 * 235.18583 * 6 5 4 8 8 N 1.34775 * 120.00218 * 55.18974 * 6 5 4 9 9 C 1.47073 * 120.93049 * 356.04880 * 8 6 5 10 10 C 1.52631 * 107.78749 * 121.19443 * 9 8 6 11 11 C 1.50298 * 112.43237 * 52.40606 * 10 9 8 12 12 H 1.08995 * 105.74288 * 196.48484 * 11 10 9 13 13 C 1.52114 * 116.66467 * 314.27316 * 11 10 9 14 14 H 1.09000 * 111.19823 * 272.29759 * 13 11 10 15 15 C 1.55995 * 102.18417 * 153.96741 * 13 11 10 16 16 C 1.55071 * 101.17373 * 323.00925 * 15 13 11 17 17 N 1.46507 * 113.03225 * 80.91061 * 11 10 9 18 18 C 1.36932 * 125.97082 * 47.08074 * 17 11 10 19 19 H 1.07998 * 120.00513 * 359.94879 * 18 17 11 20 20 C 1.38814 * 120.00425 * 179.97438 * 18 17 11 21 21 N 1.31623 * 119.99522 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00672 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46734 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46999 * 119.99739 * 22 20 18 25 25 H 1.48492 * 109.47491 * 240.00280 * 22 20 18 26 26 C 1.46116 * 120.93277 * 176.07098 * 8 6 5 27 27 C 1.39966 * 118.22053 * 359.45891 * 5 4 3 28 28 C 1.37976 * 119.13305 * 0.27469 * 27 5 4 29 29 C 1.50692 * 119.51356 * 179.97438 * 28 27 5 30 30 N 1.31910 * 120.97653 * 0.02562 * 28 27 5 31 31 H 1.09003 * 109.47341 * 59.99709 * 1 2 3 32 32 H 1.08996 * 109.47674 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47306 * 300.00520 * 1 2 3 34 34 H 1.07997 * 120.52537 * 0.05136 * 4 3 2 35 35 H 1.08992 * 109.79570 * 1.62358 * 9 8 6 36 36 H 1.08997 * 109.84069 * 240.79294 * 9 8 6 37 37 H 1.09004 * 108.89086 * 291.64655 * 10 9 8 38 38 H 1.08994 * 108.89054 * 173.16415 * 10 9 8 39 39 H 1.09002 * 111.08569 * 80.98091 * 15 13 11 40 40 H 1.09005 * 111.08116 * 205.03777 * 15 13 11 41 41 H 1.09004 * 110.36259 * 155.67838 * 16 15 13 42 42 H 1.09001 * 110.35896 * 277.98255 * 16 15 13 43 43 H 0.97001 * 120.00239 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.03576 * 111.85792 * 26 8 6 45 45 H 1.08999 * 109.03770 * 352.99021 * 26 8 6 46 46 H 1.08000 * 120.43238 * 180.29536 * 27 5 4 47 47 H 1.08996 * 109.47256 * 89.99933 * 29 28 27 48 48 H 1.09003 * 109.47503 * 210.00456 * 29 28 27 49 49 H 1.09004 * 109.47147 * 330.00425 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2725 -0.0054 5 6 4.0514 2.5234 0.0009 6 6 5.5284 2.6414 0.0014 7 8 6.0862 3.2842 0.8686 8 7 6.2531 2.0357 -0.9600 9 6 5.6074 1.1824 -1.9689 10 6 5.9195 1.7678 -3.3435 11 6 7.3914 1.9892 -3.5519 12 1 7.4713 2.6639 -4.4042 13 6 8.1499 2.6526 -2.4124 14 1 8.1179 3.7388 -2.4974 15 6 9.6004 2.1209 -2.6289 16 6 9.3214 0.6698 -3.0992 17 7 8.1063 0.7687 -3.9336 18 6 7.7166 -0.1241 -4.8960 19 1 6.8053 0.0436 -5.4509 20 6 8.4924 -1.2450 -5.1580 21 7 9.6024 -1.4499 -4.4811 22 14 7.9604 -2.4632 -6.4703 23 1 6.6859 -2.0075 -7.0812 24 1 9.0081 -2.5501 -7.5190 25 1 7.7644 -3.8001 -5.8544 26 6 7.7024 2.2081 -1.0290 27 6 3.2395 3.6635 0.0008 28 6 1.8681 3.5116 0.0004 29 6 0.9859 4.7332 0.0009 30 7 1.3179 2.3127 0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 4.0230 0.3683 -0.0105 35 1 4.5294 1.1719 -1.8083 36 1 6.0004 0.1680 -1.9018 37 1 5.4011 2.7210 -3.4471 38 1 5.5536 1.0842 -4.1096 39 1 10.1159 2.6912 -3.4016 40 1 10.1643 2.1290 -1.6960 41 1 10.1575 0.2952 -3.6898 42 1 9.1409 0.0213 -2.2419 43 1 10.1444 -2.2333 -4.6639 44 1 8.1850 1.2613 -0.7863 45 1 8.0064 2.9581 -0.2988 46 1 3.6807 4.6493 0.0008 47 1 0.7735 5.0285 -1.0266 48 1 0.0515 4.5065 0.5144 49 1 1.4946 5.5486 0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036802688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:12 Heat of formation + Delta-G solvation = 2.433325 kcal Electronic energy + Delta-G solvation = -31345.849855 eV Core-core repulsion = 27274.420071 eV Total energy + Delta-G solvation = -4071.429785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.18511 -40.01570 -38.51144 -37.88090 -35.27820 -33.54609 -32.66686 -31.98865 -31.79922 -29.42184 -28.59216 -27.86780 -26.82523 -25.78921 -24.45735 -23.16966 -22.93210 -22.52169 -20.22837 -19.92716 -18.60396 -17.96192 -17.15928 -16.79351 -16.41394 -16.21192 -16.15779 -15.86099 -15.15253 -14.93881 -14.50446 -14.34483 -14.25630 -14.03616 -13.96063 -13.54988 -13.04689 -12.93689 -12.74003 -12.67872 -12.53967 -12.35697 -12.15941 -11.93033 -11.76877 -11.40073 -11.25895 -11.18760 -11.10009 -10.81806 -10.63856 -10.34639 -10.21134 -10.15973 -10.00409 -9.98458 -9.68212 -9.59308 -9.50673 -8.68472 -8.62950 -8.38583 -6.85432 -5.71052 -3.10558 0.68351 0.92391 2.55209 2.80680 3.09166 3.36384 3.42161 3.44500 3.49918 3.88936 4.29360 4.44248 4.68696 4.80655 4.86862 5.03960 5.09310 5.11353 5.16429 5.21052 5.25185 5.30086 5.30785 5.38164 5.40141 5.48503 5.52746 5.60249 5.66797 5.69157 5.82219 5.87177 5.93235 6.06398 6.09514 6.15381 6.25985 6.30468 6.39923 6.52735 6.64523 6.65794 6.85960 6.92964 6.98670 7.46807 7.49498 7.58910 7.59605 7.81436 8.11106 8.29979 9.17002 9.79058 10.45396 11.34607 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003372 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.067034 B = 8300.830649 C = 9840.479233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.327 3.673 4 C -0.168 4.168 5 C -0.030 4.030 6 C 0.560 3.440 7 O -0.537 6.537 8 N -0.588 5.588 9 C 0.105 3.895 10 C -0.136 4.136 11 C 0.172 3.828 12 H 0.013 0.987 13 C -0.104 4.104 14 H 0.072 0.928 15 C -0.142 4.142 16 C 0.155 3.845 17 N -0.593 5.593 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.123 3.877 27 C -0.167 4.167 28 C 0.167 3.833 29 C -0.103 4.103 30 N -0.532 5.532 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.013 0.987 43 H 0.251 0.749 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.143 0.857 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.057 9.081 8.825 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.211 6.211 3 C 0.148 3.852 4 C -0.189 4.189 5 C -0.041 4.041 6 C 0.346 3.654 7 O -0.415 6.415 8 N -0.319 5.319 9 C -0.017 4.017 10 C -0.176 4.176 11 C 0.064 3.936 12 H 0.031 0.969 13 C -0.124 4.124 14 H 0.091 0.909 15 C -0.181 4.181 16 C 0.031 3.969 17 N -0.318 5.318 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.001 3.999 27 C -0.188 4.188 28 C 0.031 3.969 29 C -0.161 4.161 30 N -0.258 5.258 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.161 0.839 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.457 8.847 9.157 20.026 hybrid contribution 0.325 -0.687 -0.783 1.091 sum -15.132 8.160 8.374 19.123 Atomic orbital electron populations 1.22868 0.77087 1.03056 1.02420 1.86278 1.23007 1.24083 1.87700 1.19564 0.88855 0.84667 0.92148 1.21172 0.92347 0.98610 1.06778 1.20083 0.94123 0.93303 0.96578 1.18104 0.85826 0.79449 0.81999 1.90778 1.71705 1.42134 1.36839 1.47915 1.08469 1.46878 1.28602 1.21941 0.97439 0.94710 0.87650 1.21603 0.99001 1.00455 0.96515 1.19543 0.90005 0.90045 0.94013 0.96943 1.21896 0.97549 0.99071 0.93892 0.90914 1.23303 0.93896 1.00622 1.00259 1.21926 0.91962 0.89358 0.93701 1.44549 1.22605 1.23704 1.40966 1.19015 1.05679 1.00110 1.10087 0.90436 1.24756 0.97428 0.98432 0.99820 1.69843 1.15111 1.28827 1.42998 0.86057 0.77642 0.81143 0.81005 1.20560 1.21795 1.21785 1.21308 0.78416 1.02545 0.97615 1.21764 0.93394 0.99122 1.04471 1.20831 0.91512 0.91892 0.92675 1.20753 0.99065 0.92769 1.03484 1.66976 1.41128 0.98409 1.19259 0.92202 0.88524 0.92331 0.83248 0.90075 0.89762 0.93126 0.89982 0.91802 0.91973 0.88161 0.96883 0.93785 0.90801 0.89677 0.83868 0.89946 0.90301 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.30 -3.68 10.47 -18.76 -0.20 -3.88 16 3 C 0.33 4.21 7.49 -17.16 -0.13 4.08 16 4 C -0.17 -2.21 7.48 -38.84 -0.29 -2.50 16 5 C -0.03 -0.42 4.93 -104.68 -0.52 -0.93 16 6 C 0.56 8.93 7.26 -12.18 -0.09 8.85 16 7 O -0.54 -9.92 16.52 5.35 0.09 -9.84 16 8 N -0.59 -9.41 2.94 -175.33 -0.52 -9.92 16 9 C 0.10 1.66 5.83 -3.92 -0.02 1.63 16 10 C -0.14 -2.34 5.60 -28.27 -0.16 -2.49 16 11 C 0.17 3.36 2.70 -69.72 -0.19 3.17 16 12 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 13 C -0.10 -1.79 3.45 -89.96 -0.31 -2.10 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.14 -2.56 6.38 -24.03 -0.15 -2.72 16 16 C 0.16 3.56 5.50 -2.27 -0.01 3.55 16 17 N -0.59 -14.07 3.29 -165.45 -0.54 -14.62 16 18 C -0.22 -5.76 9.62 -15.06 -0.14 -5.90 16 19 H 0.08 1.96 7.09 -52.49 -0.37 1.59 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -25.86 10.17 55.49 0.56 -25.29 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.12 2.04 5.62 -4.74 -0.03 2.01 16 27 C -0.17 -1.99 9.50 -39.03 -0.37 -2.36 16 28 C 0.17 1.83 6.77 -82.66 -0.56 1.27 16 29 C -0.10 -0.74 10.16 36.00 0.37 -0.38 16 30 N -0.53 -6.48 9.09 -9.60 -0.09 -6.57 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.15 1.89 7.49 -52.49 -0.39 1.50 16 35 H 0.08 1.14 4.63 -51.93 -0.24 0.90 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.51 6.82 -51.93 -0.35 1.16 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 41 H 0.10 2.63 6.04 -51.93 -0.31 2.32 16 42 H 0.01 0.32 7.44 -51.93 -0.39 -0.06 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.07 1.30 6.80 -51.93 -0.35 0.95 16 45 H 0.08 1.38 7.00 -51.93 -0.36 1.01 16 46 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -30.89 384.53 -8.96 -39.85 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.39 Total: 1.85 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.65 Total: 6.25 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.58 Total: -56.40 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.11 Total: -13.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.89 -8.96 -39.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.281 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds