Wall clock time and date at job start Wed Apr 1 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35686 * 117.00137 * 2 1 4 4 C 1.38904 * 119.62331 * 180.25713 * 3 2 1 5 5 C 1.39566 * 118.94398 * 180.29320 * 4 3 2 6 6 C 1.48166 * 120.88867 * 179.73402 * 5 4 3 7 7 O 1.21513 * 119.99938 * 235.18583 * 6 5 4 8 8 N 1.34775 * 120.00218 * 55.18974 * 6 5 4 9 9 C 1.47073 * 120.93049 * 356.04880 * 8 6 5 10 10 C 1.52631 * 107.78749 * 121.19443 * 9 8 6 11 11 C 1.50298 * 112.43237 * 52.40606 * 10 9 8 12 12 H 1.08995 * 105.74288 * 196.48484 * 11 10 9 13 13 C 1.52114 * 116.66467 * 314.27316 * 11 10 9 14 14 H 1.09000 * 111.19823 * 272.29759 * 13 11 10 15 15 C 1.55995 * 102.18417 * 153.96741 * 13 11 10 16 16 C 1.55071 * 101.17373 * 323.00925 * 15 13 11 17 17 N 1.46507 * 113.03225 * 80.91061 * 11 10 9 18 18 C 1.36932 * 125.97082 * 47.08074 * 17 11 10 19 19 H 1.07998 * 120.00513 * 359.94879 * 18 17 11 20 20 C 1.38814 * 120.00425 * 179.97438 * 18 17 11 21 21 N 1.31623 * 119.99522 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00672 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46734 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46999 * 119.99739 * 22 20 18 25 25 H 1.48492 * 109.47491 * 240.00280 * 22 20 18 26 26 C 1.46116 * 120.93277 * 176.07098 * 8 6 5 27 27 C 1.39966 * 118.22053 * 359.45891 * 5 4 3 28 28 C 1.37976 * 119.13305 * 0.27469 * 27 5 4 29 29 C 1.50692 * 119.51356 * 179.97438 * 28 27 5 30 30 N 1.31910 * 120.97653 * 0.02562 * 28 27 5 31 31 H 1.09003 * 109.47341 * 59.99709 * 1 2 3 32 32 H 1.08996 * 109.47674 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47306 * 300.00520 * 1 2 3 34 34 H 1.07997 * 120.52537 * 0.05136 * 4 3 2 35 35 H 1.08992 * 109.79570 * 1.62358 * 9 8 6 36 36 H 1.08997 * 109.84069 * 240.79294 * 9 8 6 37 37 H 1.09004 * 108.89086 * 291.64655 * 10 9 8 38 38 H 1.08994 * 108.89054 * 173.16415 * 10 9 8 39 39 H 1.09002 * 111.08569 * 80.98091 * 15 13 11 40 40 H 1.09005 * 111.08116 * 205.03777 * 15 13 11 41 41 H 1.09004 * 110.36259 * 155.67838 * 16 15 13 42 42 H 1.09001 * 110.35896 * 277.98255 * 16 15 13 43 43 H 0.97001 * 120.00239 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.03576 * 111.85792 * 26 8 6 45 45 H 1.08999 * 109.03770 * 352.99021 * 26 8 6 46 46 H 1.08000 * 120.43238 * 180.29536 * 27 5 4 47 47 H 1.08996 * 109.47256 * 89.99933 * 29 28 27 48 48 H 1.09003 * 109.47503 * 210.00456 * 29 28 27 49 49 H 1.09004 * 109.47147 * 330.00425 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2725 -0.0054 5 6 4.0514 2.5234 0.0009 6 6 5.5284 2.6414 0.0014 7 8 6.0862 3.2842 0.8686 8 7 6.2531 2.0357 -0.9600 9 6 5.6074 1.1824 -1.9689 10 6 5.9195 1.7678 -3.3435 11 6 7.3914 1.9892 -3.5519 12 1 7.4713 2.6639 -4.4042 13 6 8.1499 2.6526 -2.4124 14 1 8.1179 3.7388 -2.4974 15 6 9.6004 2.1209 -2.6289 16 6 9.3214 0.6698 -3.0992 17 7 8.1063 0.7687 -3.9336 18 6 7.7166 -0.1241 -4.8960 19 1 6.8053 0.0436 -5.4509 20 6 8.4924 -1.2450 -5.1580 21 7 9.6024 -1.4499 -4.4811 22 14 7.9604 -2.4632 -6.4703 23 1 6.6859 -2.0075 -7.0812 24 1 9.0081 -2.5501 -7.5190 25 1 7.7644 -3.8001 -5.8544 26 6 7.7024 2.2081 -1.0290 27 6 3.2395 3.6635 0.0008 28 6 1.8681 3.5116 0.0004 29 6 0.9859 4.7332 0.0009 30 7 1.3179 2.3127 0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 4.0230 0.3683 -0.0105 35 1 4.5294 1.1719 -1.8083 36 1 6.0004 0.1680 -1.9018 37 1 5.4011 2.7210 -3.4471 38 1 5.5536 1.0842 -4.1096 39 1 10.1159 2.6912 -3.4016 40 1 10.1643 2.1290 -1.6960 41 1 10.1575 0.2952 -3.6898 42 1 9.1409 0.0213 -2.2419 43 1 10.1444 -2.2333 -4.6639 44 1 8.1850 1.2613 -0.7863 45 1 8.0064 2.9581 -0.2988 46 1 3.6807 4.6493 0.0008 47 1 0.7735 5.0285 -1.0266 48 1 0.0515 4.5065 0.5144 49 1 1.4946 5.5486 0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036802688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:10 Heat of formation + Delta-G solvation = -17.073181 kcal Electronic energy + Delta-G solvation = -31346.695721 eV Core-core repulsion = 27274.420071 eV Total energy + Delta-G solvation = -4072.275650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.23225 -41.24572 -39.84545 -38.89335 -36.75946 -34.89338 -34.06042 -33.36310 -32.85825 -31.14337 -29.41539 -29.33237 -27.62199 -27.21558 -26.13976 -24.32804 -24.19466 -23.66505 -21.94856 -21.15870 -19.89525 -19.19259 -18.44775 -18.12776 -17.74513 -17.26561 -17.18363 -17.04304 -16.75700 -16.22318 -16.04006 -15.67131 -15.34065 -15.21149 -15.03136 -14.64621 -14.42086 -14.38032 -14.06840 -13.89274 -13.43632 -13.36429 -13.27207 -13.04334 -13.03037 -12.91780 -12.71461 -12.67502 -12.56295 -12.24460 -12.04010 -11.93861 -11.72777 -11.64099 -11.52605 -11.40438 -11.24544 -10.94059 -10.69255 -10.65736 -9.76405 -9.53007 -8.79893 -7.74599 -5.15003 -0.30854 0.00509 1.35772 1.48062 1.48855 1.58070 1.72235 2.06970 2.51492 2.55092 3.03689 3.21099 3.36651 3.63231 3.72514 3.80284 3.81744 3.88780 3.96277 4.01725 4.12944 4.19514 4.34016 4.38893 4.43203 4.44183 4.47780 4.53473 4.60321 4.72445 4.75434 4.75668 4.81416 4.85864 4.87179 4.91347 4.96870 5.03037 5.06213 5.14546 5.28212 5.36655 5.37707 5.45030 5.54041 5.68332 5.85957 6.13096 6.20878 6.33644 6.69067 6.83721 7.15114 7.83773 8.49518 9.29684 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003372 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.067034 B = 8300.830649 C = 9840.479233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.318 6.318 3 C 0.320 3.680 4 C -0.180 4.180 5 C -0.042 4.042 6 C 0.565 3.435 7 O -0.562 6.562 8 N -0.588 5.588 9 C 0.116 3.884 10 C -0.130 4.130 11 C 0.166 3.834 12 H 0.006 0.994 13 C -0.094 4.094 14 H 0.099 0.901 15 C -0.128 4.128 16 C 0.159 3.841 17 N -0.610 5.610 18 C -0.222 4.222 19 H 0.083 0.917 20 C -0.066 4.066 21 N -0.949 5.949 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.127 3.873 27 C -0.168 4.168 28 C 0.171 3.829 29 C -0.101 4.101 30 N -0.536 5.536 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.146 0.854 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.064 0.936 42 H -0.012 1.012 43 H 0.244 0.756 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.159 0.841 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 11.060 9.071 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.141 3.859 4 C -0.201 4.201 5 C -0.053 4.053 6 C 0.353 3.647 7 O -0.442 6.442 8 N -0.318 5.318 9 C -0.006 4.006 10 C -0.170 4.170 11 C 0.060 3.940 12 H 0.023 0.977 13 C -0.113 4.113 14 H 0.117 0.883 15 C -0.166 4.166 16 C 0.034 3.966 17 N -0.335 5.335 18 C -0.351 4.351 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.599 5.599 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.224 1.224 26 C 0.005 3.995 27 C -0.188 4.188 28 C 0.034 3.966 29 C -0.158 4.158 30 N -0.261 5.261 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.006 0.994 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.176 0.824 47 H 0.115 0.885 48 H 0.103 0.897 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.849 10.847 9.401 22.904 hybrid contribution 0.974 -1.257 -0.831 1.794 sum -16.875 9.589 8.571 21.217 Atomic orbital electron populations 1.23106 0.75342 1.04761 1.02605 1.86262 1.24809 1.23935 1.87542 1.19660 0.88859 0.85226 0.92145 1.21135 0.92779 0.98386 1.07826 1.19951 0.92768 0.94296 0.98263 1.18366 0.86692 0.78489 0.81108 1.90760 1.72511 1.43290 1.37629 1.47892 1.08260 1.46904 1.28750 1.21793 0.98476 0.93299 0.87005 1.21498 0.97349 1.01420 0.96731 1.19769 0.91351 0.88170 0.94733 0.97662 1.21862 0.96066 1.00205 0.93179 0.88300 1.23158 0.95104 0.97022 1.01355 1.21680 0.90677 0.92078 0.92141 1.44782 1.23583 1.24431 1.40728 1.19347 1.05367 1.00254 1.10093 0.89924 1.25497 0.97849 1.00389 1.02093 1.70082 1.16204 1.29005 1.44601 0.85111 0.77552 0.78752 0.78577 1.19019 1.22350 1.22373 1.21206 0.78881 1.01983 0.97413 1.22000 0.93745 0.99141 1.03945 1.21455 0.91739 0.92619 0.90807 1.20885 0.98740 0.91449 1.04743 1.67096 1.41085 0.98655 1.19290 0.92075 0.86169 0.91999 0.83605 0.88024 0.92152 0.90712 0.91356 0.91293 0.89587 0.91795 0.99368 0.94640 0.92398 0.88754 0.82370 0.88483 0.89695 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 113.37 1.18 1.74 16 2 O -0.32 -7.37 10.47 -90.04 -0.94 -8.31 16 3 C 0.32 7.85 7.49 84.80 0.63 8.49 16 4 C -0.18 -4.60 7.48 22.75 0.17 -4.43 16 5 C -0.04 -1.10 4.93 -19.90 -0.10 -1.20 16 6 C 0.57 17.33 7.26 86.88 0.63 17.96 16 7 O -0.56 -20.07 16.52 -3.76 -0.06 -20.13 16 8 N -0.59 -18.23 2.94 -826.93 -2.43 -20.66 16 9 C 0.12 3.62 5.83 86.15 0.50 4.12 16 10 C -0.13 -4.33 5.60 29.60 0.17 -4.16 16 11 C 0.17 6.38 2.70 43.83 0.12 6.49 16 12 H 0.01 0.23 8.09 -2.39 -0.02 0.21 16 13 C -0.09 -3.06 3.45 -10.36 -0.04 -3.09 16 14 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 15 C -0.13 -4.51 6.38 32.34 0.21 -4.31 16 16 C 0.16 7.53 5.50 86.85 0.48 8.01 16 17 N -0.61 -29.39 3.29 -677.36 -2.23 -31.62 16 18 C -0.22 -11.72 9.62 84.03 0.81 -10.91 16 19 H 0.08 4.19 7.09 -2.91 -0.02 4.17 16 20 C -0.07 -3.62 5.49 84.86 0.47 -3.15 16 21 N -0.95 -55.42 10.17 21.65 0.22 -55.20 16 22 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 C 0.13 4.09 5.62 86.14 0.48 4.57 16 27 C -0.17 -3.59 9.50 22.63 0.22 -3.38 16 28 C 0.17 3.26 6.77 42.48 0.29 3.55 16 29 C -0.10 -1.09 10.16 71.23 0.72 -0.37 16 30 N -0.54 -11.94 9.09 -297.17 -2.70 -14.64 16 31 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 0.91 8.10 -2.38 -0.02 0.89 16 34 H 0.15 3.71 7.49 -2.91 -0.02 3.69 16 35 H 0.10 2.77 4.63 -2.39 -0.01 2.76 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 2.47 6.82 -2.39 -0.02 2.46 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.09 2.64 7.94 -2.38 -0.02 2.62 16 41 H 0.06 3.51 6.04 -2.39 -0.01 3.49 16 42 H -0.01 -0.60 7.44 -2.39 -0.02 -0.61 16 43 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.06 2.05 6.80 -2.38 -0.02 2.03 16 45 H 0.09 2.89 7.00 -2.39 -0.02 2.87 16 46 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 47 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.10 0.73 8.07 -2.38 -0.02 0.71 16 Total: -1.00 -68.06 384.53 1.77 -66.29 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.96 Total: 17.54 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.93 Total: 19.92 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -7.14 Total: -122.12 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.01 Total: -28.44 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.06 1.77 -66.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.216 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds