Wall clock time and date at job start Wed Apr 1 2020 04:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35680 * 116.99963 * 2 1 4 4 C 1.38894 * 119.62242 * 180.02562 * 3 2 1 5 5 C 1.39581 * 118.94751 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.89316 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99616 * 130.91207 * 6 5 4 8 8 N 1.34774 * 119.99994 * 310.91628 * 6 5 4 9 9 C 1.46592 * 119.68372 * 183.75078 * 8 6 5 10 10 C 1.53954 * 110.57827 * 132.14980 * 9 8 6 11 11 C 1.51525 * 107.34541 * 51.05339 * 10 9 8 12 12 H 1.09006 * 109.27511 * 53.02545 * 11 10 9 13 13 C 1.55363 * 107.79465 * 295.14629 * 11 10 9 14 14 H 1.08997 * 111.51245 * 308.81280 * 13 11 10 15 15 C 1.53742 * 100.22018 * 190.91049 * 13 11 10 16 16 C 1.55290 * 101.83975 * 39.09231 * 15 13 11 17 17 N 1.45465 * 117.35152 * 178.08911 * 11 10 9 18 18 C 1.36930 * 126.40649 * 329.34978 * 17 11 10 19 19 H 1.08002 * 120.00118 * 359.97438 * 18 17 11 20 20 C 1.38814 * 119.99828 * 180.02562 * 18 17 11 21 21 N 1.31614 * 120.00119 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46671 * 119.99780 * 22 20 18 25 25 H 1.48492 * 109.47067 * 239.99717 * 22 20 18 26 26 C 1.47719 * 119.68384 * 3.47679 * 8 6 5 27 27 C 1.39964 * 118.21604 * 359.97438 * 5 4 3 28 28 C 1.37982 * 119.13551 * 0.27600 * 27 5 4 29 29 C 1.50694 * 119.51325 * 179.70320 * 28 27 5 30 30 N 1.31916 * 120.97360 * 359.44648 * 28 27 5 31 31 H 1.09002 * 109.47003 * 300.00272 * 1 2 3 32 32 H 1.09000 * 109.47065 * 59.99998 * 1 2 3 33 33 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 34 34 H 1.07997 * 120.52950 * 0.02562 * 4 3 2 35 35 H 1.09006 * 109.25603 * 252.43192 * 9 8 6 36 36 H 1.08997 * 109.25520 * 11.86867 * 9 8 6 37 37 H 1.09002 * 109.88494 * 170.51401 * 10 9 8 38 38 H 1.09001 * 109.88217 * 291.60172 * 10 9 8 39 39 H 1.09005 * 110.95379 * 280.96019 * 15 13 11 40 40 H 1.08995 * 110.95503 * 157.22888 * 15 13 11 41 41 H 1.09004 * 109.91877 * 218.17296 * 16 15 13 42 42 H 1.08996 * 110.08617 * 96.96409 * 16 15 13 43 43 H 0.97004 * 120.00337 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.07076 * 351.29426 * 26 8 6 45 45 H 1.09003 * 110.06894 * 112.87286 * 26 8 6 46 46 H 1.08001 * 120.43396 * 180.02562 * 27 5 4 47 47 H 1.09002 * 109.47309 * 90.00224 * 29 28 27 48 48 H 1.08999 * 109.46853 * 209.99729 * 29 28 27 49 49 H 1.08994 * 109.47139 * 329.99834 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0515 2.5235 -0.0011 6 6 5.5284 2.6415 -0.0011 7 8 6.0791 3.3766 -0.7967 8 7 6.2610 1.9336 0.8812 9 6 7.7145 2.1173 0.9307 10 6 8.1869 2.3071 2.3836 11 6 7.6044 1.1712 3.2000 12 1 7.8593 0.2219 2.7289 13 6 6.0587 1.3278 3.1963 14 1 5.7582 2.3346 3.4862 15 6 5.6777 0.2990 4.2734 16 6 6.8058 0.5021 5.3211 17 7 7.9525 1.1155 4.6113 18 6 9.1217 1.5483 5.1777 19 1 9.8937 1.9811 4.5588 20 6 9.3150 1.4297 6.5471 21 7 8.3743 0.9018 7.3013 22 14 10.9103 2.0195 7.3197 23 1 11.7979 2.5696 6.2639 24 1 10.6147 3.0781 8.3184 25 1 11.5859 0.8803 7.9911 26 6 5.5909 0.9844 1.7934 27 6 3.2395 3.6636 -0.0016 28 6 1.8681 3.5116 0.0042 29 6 0.9859 4.7333 0.0105 30 7 1.3179 2.3127 -0.0007 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.0231 0.3683 -0.0014 35 1 8.2024 1.2400 0.5058 36 1 7.9857 2.9969 0.3468 37 1 9.2755 2.2744 2.4268 38 1 7.8282 3.2618 2.7683 39 1 5.6981 -0.7134 3.8700 40 1 4.7019 0.5268 4.7021 41 1 7.1003 -0.4598 5.7409 42 1 6.4635 1.1648 6.1160 43 1 8.5096 0.8186 8.2582 44 1 4.5091 1.0981 1.7228 45 1 5.8777 -0.0378 1.5462 46 1 3.6807 4.6494 -0.0024 47 1 0.7685 5.0298 -1.0156 48 1 0.0539 4.5057 0.5281 49 1 1.4969 5.5478 0.5236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036802689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:16 Heat of formation + Delta-G solvation = 3.665911 kcal Electronic energy + Delta-G solvation = -31119.356315 eV Core-core repulsion = 27047.979980 eV Total energy + Delta-G solvation = -4071.376336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28302 -40.07651 -38.54815 -37.96623 -35.40160 -33.72098 -32.62226 -32.10691 -31.54219 -29.60973 -28.63882 -28.17023 -26.89326 -25.45754 -24.32409 -23.37670 -22.77508 -22.02775 -20.23821 -19.94904 -19.30025 -18.23050 -17.24241 -16.86579 -16.43319 -16.32201 -16.11654 -15.73792 -15.22721 -14.97356 -14.54293 -14.47064 -14.30294 -13.92127 -13.86198 -13.50381 -13.22211 -13.11536 -12.82514 -12.69084 -12.58536 -12.37965 -12.33389 -11.99852 -11.76223 -11.58318 -11.44142 -11.30631 -10.86375 -10.81955 -10.70396 -10.46100 -10.13565 -10.11230 -10.06985 -9.91620 -9.81623 -9.65686 -9.40771 -8.68040 -8.65076 -8.63059 -6.86938 -5.74424 -3.07591 0.59324 0.87315 2.50410 2.71788 2.97331 3.37970 3.43770 3.45268 3.45954 3.84176 4.16763 4.46864 4.62735 4.72765 4.81149 4.89248 4.99592 5.05311 5.11728 5.14823 5.21442 5.26962 5.28545 5.33238 5.36549 5.43685 5.53484 5.55465 5.59821 5.65860 5.78021 5.81687 5.83101 5.91198 6.05103 6.06887 6.13153 6.19929 6.32175 6.41362 6.56768 6.59811 6.76857 6.92821 7.01320 7.29081 7.52323 7.54099 7.57401 7.78192 8.00368 8.21262 9.16697 9.80182 10.47545 11.38143 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.002833 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.228485 B = 9879.629694 C =10591.802524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.325 3.675 4 C -0.169 4.169 5 C -0.035 4.035 6 C 0.558 3.442 7 O -0.534 6.534 8 N -0.593 5.593 9 C 0.116 3.884 10 C -0.129 4.129 11 C 0.168 3.832 12 H 0.020 0.980 13 C -0.127 4.127 14 H 0.080 0.920 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.594 5.594 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.108 3.892 27 C -0.163 4.163 28 C 0.168 3.832 29 C -0.104 4.104 30 N -0.531 5.531 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.145 0.855 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.984 1.243 -15.115 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.146 3.854 4 C -0.190 4.190 5 C -0.045 4.045 6 C 0.345 3.655 7 O -0.411 6.411 8 N -0.325 5.325 9 C -0.006 4.006 10 C -0.168 4.168 11 C 0.060 3.940 12 H 0.038 0.962 13 C -0.148 4.148 14 H 0.099 0.901 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.014 4.014 27 C -0.184 4.184 28 C 0.032 3.968 29 C -0.161 4.161 30 N -0.256 5.256 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.168 0.832 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.163 0.837 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.321 1.264 -15.295 22.404 hybrid contribution 1.463 0.293 0.635 1.622 sum -14.857 1.558 -14.660 20.931 Atomic orbital electron populations 1.22876 0.77019 1.03068 1.02489 1.86264 1.23060 1.24068 1.87742 1.19561 0.88852 0.84709 0.92251 1.21201 0.92358 0.98555 1.06912 1.20092 0.94088 0.93325 0.97042 1.18179 0.85894 0.80128 0.81330 1.90782 1.72184 1.39223 1.38931 1.48240 1.08113 1.40620 1.35480 1.21715 0.77984 1.02596 0.98297 1.21895 1.01504 1.00460 0.92907 1.20645 0.91040 0.94976 0.87384 0.96235 1.22579 0.99133 1.00323 0.92735 0.90144 1.22713 0.99928 0.97381 0.97366 1.21535 0.84041 0.97750 0.91443 1.44207 1.15803 1.71424 1.00435 1.19047 0.91945 1.33549 0.90779 0.90291 1.24790 0.98185 1.01253 0.96203 1.69942 1.32568 1.49769 1.04607 0.86079 0.82735 0.77940 0.79226 1.20497 1.21808 1.21777 1.22086 0.97772 0.92346 0.89208 1.21809 0.93396 0.99271 1.03903 1.20855 0.91526 0.91904 0.92537 1.20762 0.99147 0.92780 1.03452 1.66984 1.41141 0.98425 1.19041 0.92142 0.92323 0.88505 0.83217 0.91496 0.89215 0.90321 0.91390 0.92230 0.92096 0.94335 0.92655 0.93810 0.89222 0.90493 0.83734 0.89982 0.90208 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.32 10.47 -18.74 -0.20 -3.52 16 3 C 0.33 3.86 7.49 -17.16 -0.13 3.73 16 4 C -0.17 -2.00 7.36 -38.84 -0.29 -2.28 16 5 C -0.03 -0.45 5.03 -104.67 -0.53 -0.97 16 6 C 0.56 8.28 7.29 -12.19 -0.09 8.19 16 7 O -0.53 -9.34 16.40 5.36 0.09 -9.25 16 8 N -0.59 -8.51 3.01 -173.74 -0.52 -9.04 16 9 C 0.12 1.71 6.31 -3.49 -0.02 1.69 16 10 C -0.13 -2.22 5.48 -26.98 -0.15 -2.37 16 11 C 0.17 3.26 2.58 -67.98 -0.18 3.09 16 12 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 13 C -0.13 -2.13 2.84 -89.58 -0.25 -2.38 16 14 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 15 C -0.13 -2.37 6.54 -25.13 -0.16 -2.53 16 16 C 0.18 4.13 5.46 -1.91 -0.01 4.12 16 17 N -0.59 -14.52 3.35 -163.09 -0.55 -15.06 16 18 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 19 H 0.08 2.05 7.21 -52.49 -0.38 1.67 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.60 10.43 55.49 0.58 -26.02 16 22 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.11 1.45 4.76 -3.97 -0.02 1.43 16 27 C -0.16 -1.88 9.47 -39.03 -0.37 -2.25 16 28 C 0.17 1.77 6.77 -82.65 -0.56 1.21 16 29 C -0.10 -0.73 10.16 36.00 0.37 -0.37 16 30 N -0.53 -6.12 9.09 -9.60 -0.09 -6.21 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.15 1.59 6.99 -52.49 -0.37 1.22 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.33 6.98 -51.93 -0.36 0.97 16 37 H 0.08 1.38 7.62 -51.93 -0.40 0.98 16 38 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 39 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 42 H 0.06 1.45 7.20 -51.93 -0.37 1.07 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.09 1.11 4.55 -51.93 -0.24 0.87 16 45 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 46 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -32.16 386.92 -9.00 -41.16 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.54 Total: 0.14 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.58 Total: 5.15 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.58 Total: -56.33 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.11 Total: -12.76 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.16 -9.00 -41.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.827 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds