Wall clock time and date at job start Wed Apr 1 2020 04:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35680 * 116.99963 * 2 1 4 4 C 1.38894 * 119.62242 * 180.02562 * 3 2 1 5 5 C 1.39581 * 118.94751 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.89316 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99616 * 130.91207 * 6 5 4 8 8 N 1.34774 * 119.99994 * 310.91628 * 6 5 4 9 9 C 1.46592 * 119.68372 * 183.75078 * 8 6 5 10 10 C 1.53954 * 110.57827 * 132.14980 * 9 8 6 11 11 C 1.51525 * 107.34541 * 51.05339 * 10 9 8 12 12 H 1.09006 * 109.27511 * 53.02545 * 11 10 9 13 13 C 1.55363 * 107.79465 * 295.14629 * 11 10 9 14 14 H 1.08997 * 111.51245 * 308.81280 * 13 11 10 15 15 C 1.53742 * 100.22018 * 190.91049 * 13 11 10 16 16 C 1.55290 * 101.83975 * 39.09231 * 15 13 11 17 17 N 1.45465 * 117.35152 * 178.08911 * 11 10 9 18 18 C 1.36930 * 126.40649 * 329.34978 * 17 11 10 19 19 H 1.08002 * 120.00118 * 359.97438 * 18 17 11 20 20 C 1.38814 * 119.99828 * 180.02562 * 18 17 11 21 21 N 1.31614 * 120.00119 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46671 * 119.99780 * 22 20 18 25 25 H 1.48492 * 109.47067 * 239.99717 * 22 20 18 26 26 C 1.47719 * 119.68384 * 3.47679 * 8 6 5 27 27 C 1.39964 * 118.21604 * 359.97438 * 5 4 3 28 28 C 1.37982 * 119.13551 * 0.27600 * 27 5 4 29 29 C 1.50694 * 119.51325 * 179.70320 * 28 27 5 30 30 N 1.31916 * 120.97360 * 359.44648 * 28 27 5 31 31 H 1.09002 * 109.47003 * 300.00272 * 1 2 3 32 32 H 1.09000 * 109.47065 * 59.99998 * 1 2 3 33 33 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 34 34 H 1.07997 * 120.52950 * 0.02562 * 4 3 2 35 35 H 1.09006 * 109.25603 * 252.43192 * 9 8 6 36 36 H 1.08997 * 109.25520 * 11.86867 * 9 8 6 37 37 H 1.09002 * 109.88494 * 170.51401 * 10 9 8 38 38 H 1.09001 * 109.88217 * 291.60172 * 10 9 8 39 39 H 1.09005 * 110.95379 * 280.96019 * 15 13 11 40 40 H 1.08995 * 110.95503 * 157.22888 * 15 13 11 41 41 H 1.09004 * 109.91877 * 218.17296 * 16 15 13 42 42 H 1.08996 * 110.08617 * 96.96409 * 16 15 13 43 43 H 0.97004 * 120.00337 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.07076 * 351.29426 * 26 8 6 45 45 H 1.09003 * 110.06894 * 112.87286 * 26 8 6 46 46 H 1.08001 * 120.43396 * 180.02562 * 27 5 4 47 47 H 1.09002 * 109.47309 * 90.00224 * 29 28 27 48 48 H 1.08999 * 109.46853 * 209.99729 * 29 28 27 49 49 H 1.08994 * 109.47139 * 329.99834 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0515 2.5235 -0.0011 6 6 5.5284 2.6415 -0.0011 7 8 6.0791 3.3766 -0.7967 8 7 6.2610 1.9336 0.8812 9 6 7.7145 2.1173 0.9307 10 6 8.1869 2.3071 2.3836 11 6 7.6044 1.1712 3.2000 12 1 7.8593 0.2219 2.7289 13 6 6.0587 1.3278 3.1963 14 1 5.7582 2.3346 3.4862 15 6 5.6777 0.2990 4.2734 16 6 6.8058 0.5021 5.3211 17 7 7.9525 1.1155 4.6113 18 6 9.1217 1.5483 5.1777 19 1 9.8937 1.9811 4.5588 20 6 9.3150 1.4297 6.5471 21 7 8.3743 0.9018 7.3013 22 14 10.9103 2.0195 7.3197 23 1 11.7979 2.5696 6.2639 24 1 10.6147 3.0781 8.3184 25 1 11.5859 0.8803 7.9911 26 6 5.5909 0.9844 1.7934 27 6 3.2395 3.6636 -0.0016 28 6 1.8681 3.5116 0.0042 29 6 0.9859 4.7333 0.0105 30 7 1.3179 2.3127 -0.0007 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.0231 0.3683 -0.0014 35 1 8.2024 1.2400 0.5058 36 1 7.9857 2.9969 0.3468 37 1 9.2755 2.2744 2.4268 38 1 7.8282 3.2618 2.7683 39 1 5.6981 -0.7134 3.8700 40 1 4.7019 0.5268 4.7021 41 1 7.1003 -0.4598 5.7409 42 1 6.4635 1.1648 6.1160 43 1 8.5096 0.8186 8.2582 44 1 4.5091 1.0981 1.7228 45 1 5.8777 -0.0378 1.5462 46 1 3.6807 4.6494 -0.0024 47 1 0.7685 5.0298 -1.0156 48 1 0.0539 4.5057 0.5281 49 1 1.4969 5.5478 0.5236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036802689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:15 Heat of formation + Delta-G solvation = -17.299785 kcal Electronic energy + Delta-G solvation = -31120.265456 eV Core-core repulsion = 27047.979980 eV Total energy + Delta-G solvation = -4072.285476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24830 -41.19513 -39.84913 -38.87543 -36.85875 -34.70333 -34.43946 -33.04378 -32.74917 -31.31185 -29.68246 -29.30910 -27.60567 -26.94014 -25.82576 -24.61419 -23.70947 -23.28127 -21.88776 -21.32397 -20.49905 -19.21036 -18.58190 -18.05146 -17.68017 -17.22894 -17.02437 -16.89014 -16.79391 -16.33043 -15.99687 -15.65044 -15.31521 -15.03946 -14.97670 -14.74716 -14.56024 -14.34429 -14.09264 -13.85915 -13.52007 -13.33814 -13.20944 -13.14289 -13.11477 -13.02852 -12.73547 -12.65168 -12.49870 -12.14225 -12.00446 -11.98092 -11.82796 -11.62609 -11.49110 -11.46109 -11.14470 -10.90425 -10.71925 -10.57248 -9.85357 -9.48898 -8.86747 -7.83781 -5.17617 -0.31407 0.02765 1.40765 1.45615 1.45949 1.55812 1.72361 2.08492 2.49825 2.58370 3.03973 3.20887 3.35020 3.42888 3.75113 3.82345 3.90404 3.91350 3.98315 4.02643 4.16866 4.22886 4.33154 4.41234 4.46337 4.47214 4.48108 4.53954 4.58905 4.65789 4.75691 4.79522 4.80050 4.81822 4.87102 4.87900 4.96009 5.00894 5.05831 5.10247 5.17326 5.35917 5.41806 5.50746 5.53498 5.67176 5.78599 6.13811 6.15953 6.21596 6.71507 6.85354 7.10405 7.80167 8.47795 9.27895 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.002833 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.228485 B = 9879.629694 C =10591.802524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.318 3.682 4 C -0.172 4.172 5 C -0.048 4.048 6 C 0.562 3.438 7 O -0.564 6.564 8 N -0.593 5.593 9 C 0.125 3.875 10 C -0.120 4.120 11 C 0.156 3.844 12 H 0.027 0.973 13 C -0.112 4.112 14 H 0.064 0.936 15 C -0.118 4.118 16 C 0.180 3.820 17 N -0.616 5.616 18 C -0.228 4.228 19 H 0.084 0.916 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.294 1.294 26 C 0.118 3.882 27 C -0.171 4.171 28 C 0.168 3.832 29 C -0.102 4.102 30 N -0.537 5.537 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.004 0.996 42 H 0.017 0.983 43 H 0.245 0.755 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.151 0.849 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.307 1.112 -17.001 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C 0.139 3.861 4 C -0.193 4.193 5 C -0.058 4.058 6 C 0.350 3.650 7 O -0.444 6.444 8 N -0.324 5.324 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.049 3.951 12 H 0.044 0.956 13 C -0.132 4.132 14 H 0.082 0.918 15 C -0.157 4.157 16 C 0.056 3.944 17 N -0.340 5.340 18 C -0.358 4.358 19 H 0.102 0.898 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.801 3.199 23 H -0.190 1.190 24 H -0.223 1.223 25 H -0.221 1.221 26 C -0.003 4.003 27 C -0.192 4.192 28 C 0.032 3.968 29 C -0.159 4.159 30 N -0.262 5.262 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.179 0.821 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.023 0.977 42 H 0.035 0.965 43 H 0.054 0.946 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.169 0.831 47 H 0.114 0.886 48 H 0.103 0.897 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.657 1.126 -17.219 24.689 hybrid contribution 1.814 0.340 1.188 2.195 sum -15.843 1.466 -16.031 22.586 Atomic orbital electron populations 1.23101 0.75486 1.04804 1.02450 1.86254 1.24607 1.23633 1.87527 1.19725 0.89072 0.85169 0.92125 1.21261 0.92608 0.98493 1.06946 1.19983 0.92844 0.94365 0.98619 1.18430 0.86684 0.79231 0.80682 1.90765 1.72984 1.40433 1.40175 1.48258 1.07937 1.40701 1.35497 1.21597 0.78517 1.03489 0.96133 1.21777 1.01099 0.98724 0.94282 1.20890 0.93239 0.95849 0.85082 0.95583 1.22422 0.96858 0.99311 0.94627 0.91771 1.22570 0.98338 0.98989 0.95756 1.21328 0.85721 0.94912 0.92481 1.44493 1.15461 1.71304 1.02765 1.19410 0.92978 1.32294 0.91074 0.89820 1.25577 1.01236 1.02355 0.96942 1.70157 1.34271 1.51473 1.04238 0.85102 0.79511 0.77010 0.78318 1.18970 1.22288 1.22119 1.22103 0.98679 0.93061 0.86506 1.21988 0.93905 0.99296 1.04005 1.21360 0.91628 0.92652 0.91183 1.20871 0.98825 0.91643 1.04607 1.67080 1.41284 0.98705 1.19153 0.92282 0.92215 0.85964 0.82050 0.89644 0.89289 0.90859 0.93067 0.89842 0.90142 0.97737 0.96511 0.94602 0.87476 0.88327 0.83143 0.88576 0.89689 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 113.37 1.18 1.65 16 2 O -0.31 -6.10 10.47 -89.98 -0.94 -7.04 16 3 C 0.32 6.85 7.49 84.80 0.63 7.49 16 4 C -0.17 -3.66 7.36 22.75 0.17 -3.49 16 5 C -0.05 -1.13 5.03 -19.90 -0.10 -1.23 16 6 C 0.56 15.75 7.29 86.88 0.63 16.38 16 7 O -0.56 -19.12 16.40 -3.75 -0.06 -19.18 16 8 N -0.59 -15.79 3.01 -821.88 -2.47 -18.26 16 9 C 0.13 3.46 6.31 86.68 0.55 4.01 16 10 C -0.12 -4.06 5.48 30.43 0.17 -3.89 16 11 C 0.16 5.95 2.58 45.52 0.12 6.07 16 12 H 0.03 1.00 7.90 -2.38 -0.02 0.98 16 13 C -0.11 -3.57 2.84 -10.12 -0.03 -3.60 16 14 H 0.06 2.28 8.12 -2.39 -0.02 2.26 16 15 C -0.12 -3.96 6.54 31.63 0.21 -3.76 16 16 C 0.18 8.65 5.46 86.85 0.47 9.13 16 17 N -0.62 -30.54 3.35 -669.90 -2.24 -32.78 16 18 C -0.23 -12.49 9.88 84.04 0.83 -11.66 16 19 H 0.08 4.37 7.21 -2.91 -0.02 4.35 16 20 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 21 N -0.95 -57.08 10.43 21.65 0.23 -56.86 16 22 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 C 0.12 2.84 4.76 85.76 0.41 3.25 16 27 C -0.17 -3.66 9.47 22.63 0.21 -3.45 16 28 C 0.17 3.19 6.77 42.48 0.29 3.48 16 29 C -0.10 -1.19 10.16 71.23 0.72 -0.46 16 30 N -0.54 -11.25 9.09 -297.18 -2.70 -13.95 16 31 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.16 2.94 6.99 -2.91 -0.02 2.92 16 35 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.09 2.53 6.98 -2.39 -0.02 2.52 16 37 H 0.07 2.54 7.62 -2.39 -0.02 2.52 16 38 H 0.05 1.89 8.12 -2.39 -0.02 1.87 16 39 H 0.08 2.44 8.12 -2.38 -0.02 2.42 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.00 0.24 7.77 -2.38 -0.02 0.22 16 42 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 43 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.11 2.30 4.55 -2.39 -0.01 2.29 16 45 H 0.10 2.05 8.06 -2.39 -0.02 2.03 16 46 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 Total: -1.00 -71.73 386.92 1.71 -70.02 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.95 Total: 13.74 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.93 Total: 16.51 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -7.19 Total: -121.85 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.00 Total: -26.22 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.73 1.71 -70.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.720 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds