Wall clock time and date at job start Wed Apr 1 2020 04:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35427 * 117.00261 * 2 1 4 4 N 1.32234 * 119.79946 * 359.97438 * 3 2 1 5 5 C 1.31880 * 121.80354 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.41045 * 179.97438 * 5 4 3 7 7 C 1.38354 * 121.18544 * 0.02562 * 5 4 3 8 8 C 1.38337 * 119.45861 * 359.97438 * 7 5 4 9 9 C 1.39987 * 118.34801 * 359.75836 * 8 7 5 10 10 C 1.47524 * 120.60086 * 180.24354 * 9 8 7 11 11 O 1.21590 * 120.00045 * 233.70181 * 10 9 8 12 12 N 1.34777 * 120.00067 * 53.69622 * 10 9 8 13 13 C 1.46597 * 119.68014 * 5.57215 * 12 10 9 14 14 C 1.54373 * 110.35198 * 132.09906 * 13 12 10 15 15 C 1.51524 * 107.26508 * 51.30951 * 14 13 12 16 16 H 1.09004 * 108.81168 * 53.30340 * 15 14 13 17 17 C 1.55366 * 107.78495 * 295.00215 * 15 14 13 18 18 H 1.09004 * 112.26847 * 309.15762 * 17 15 14 19 19 C 1.53737 * 100.22471 * 190.93814 * 17 15 14 20 20 C 1.55293 * 101.84041 * 39.08708 * 19 17 15 21 21 N 1.45472 * 117.34064 * 177.96261 * 15 14 13 22 22 C 1.36934 * 126.40300 * 329.35653 * 21 15 14 23 23 H 1.08000 * 120.00417 * 359.96888 * 22 21 15 24 24 C 1.38818 * 119.99592 * 179.97438 * 22 21 15 25 25 N 1.31617 * 120.00165 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99717 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47430 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47084 * 120.00016 * 26 24 22 29 29 H 1.48496 * 109.47386 * 239.99929 * 26 24 22 30 30 C 1.47716 * 119.68571 * 185.83765 * 12 10 9 31 31 H 1.08998 * 109.47782 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47214 * 300.00121 * 1 2 3 33 33 H 1.09004 * 109.47471 * 59.99684 * 1 2 3 34 34 H 1.09004 * 109.46882 * 90.00489 * 6 5 4 35 35 H 1.08997 * 109.47495 * 210.00354 * 6 5 4 36 36 H 1.09007 * 109.47066 * 330.00594 * 6 5 4 37 37 H 1.07998 * 120.27415 * 179.97438 * 7 5 4 38 38 H 1.07993 * 120.82661 * 180.02562 * 8 7 5 39 39 H 1.09010 * 109.25142 * 252.46174 * 13 12 10 40 40 H 1.08992 * 109.25822 * 11.89499 * 13 12 10 41 41 H 1.09002 * 110.03893 * 291.81452 * 14 13 12 42 42 H 1.08995 * 109.80351 * 170.67794 * 14 13 12 43 43 H 1.08996 * 110.95777 * 157.22365 * 19 17 15 44 44 H 1.09001 * 110.95662 * 280.95329 * 19 17 15 45 45 H 1.09003 * 109.91723 * 96.86934 * 20 19 17 46 46 H 1.09001 * 109.91811 * 218.16598 * 20 19 17 47 47 H 0.96996 * 119.99690 * 179.97438 * 25 24 22 48 48 H 1.09002 * 110.07230 * 351.27017 * 30 12 10 49 49 H 1.09008 * 110.06755 * 112.84964 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8771 3.5084 0.0000 6 6 1.0000 4.7339 -0.0012 7 6 3.2526 3.6575 0.0005 8 6 4.0588 2.5333 0.0011 9 6 3.4450 1.2752 0.0063 10 6 4.2569 0.0435 0.0125 11 8 4.0718 -0.8110 -0.8324 12 7 5.2040 -0.1345 0.9547 13 6 5.3396 0.8405 2.0411 14 6 5.4272 0.1184 3.4027 15 6 6.5067 -0.9381 3.2829 16 1 7.4219 -0.4664 2.9248 17 6 6.0307 -1.9868 2.2401 18 1 5.0244 -2.3499 2.4492 19 6 7.0796 -3.0885 2.4627 20 6 7.2459 -3.0629 4.0065 21 7 6.8049 -1.7261 4.4687 22 6 6.6980 -1.3101 5.7689 23 1 6.3643 -0.3069 5.9893 24 6 7.0187 -2.1780 6.8039 25 7 7.4251 -3.4007 6.5353 26 14 6.8735 -1.6104 8.5776 27 1 6.3982 -0.2039 8.6099 28 1 5.9049 -2.4763 9.2967 29 1 8.2014 -1.6998 9.2362 30 6 6.0994 -1.3070 0.8796 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.7874 5.0295 1.0262 35 1 1.5128 5.5472 -0.5146 36 1 0.0653 4.5112 -0.5161 37 1 3.6934 4.6434 0.0005 38 1 5.1349 2.6240 0.0019 39 1 6.2430 1.4300 1.8843 40 1 4.4741 1.5029 2.0396 41 1 4.4726 -0.3522 3.6380 42 1 5.6920 0.8321 4.1828 43 1 6.7062 -4.0559 2.1270 44 1 8.0173 -2.8403 1.9655 45 1 6.6252 -3.8359 4.4598 46 1 8.2917 -3.2207 4.2701 47 1 7.6495 -4.0069 7.2585 48 1 5.7567 -1.9902 0.1024 49 1 7.1203 -0.9854 0.6732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036835933.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:32 Heat of formation + Delta-G solvation = 1.139430 kcal Electronic energy + Delta-G solvation = -31285.834241 eV Core-core repulsion = 27214.348349 eV Total energy + Delta-G solvation = -4071.485892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23723 -39.83059 -38.25305 -38.08154 -35.34752 -33.55214 -32.51243 -32.03571 -31.53442 -29.71151 -28.72003 -28.10530 -26.98133 -24.94819 -23.90842 -23.26515 -22.60763 -22.31571 -20.26535 -19.93158 -19.24429 -18.35230 -17.35473 -17.10091 -16.36229 -16.28964 -15.79232 -15.24462 -14.88385 -14.84246 -14.48705 -14.37576 -14.28084 -14.00376 -13.82900 -13.53206 -13.07466 -13.06479 -12.80515 -12.74688 -12.48369 -12.45798 -12.39844 -11.93302 -11.64933 -11.48849 -11.40565 -11.25846 -10.84886 -10.80605 -10.71998 -10.29980 -10.13717 -10.10610 -10.01105 -9.86145 -9.62879 -9.57680 -9.43685 -8.66588 -8.62783 -8.46424 -6.83443 -5.71723 -3.04784 0.57398 0.99645 2.66965 2.86991 3.04093 3.38822 3.43886 3.46666 3.46888 3.83423 4.38255 4.44515 4.49616 4.71265 4.89189 4.99700 5.03656 5.09784 5.11397 5.14852 5.19518 5.21755 5.27862 5.36012 5.45108 5.52851 5.56983 5.59701 5.62113 5.65032 5.74402 5.82218 5.90324 6.04775 6.10448 6.16772 6.19314 6.25040 6.37190 6.51787 6.63781 6.65638 6.85249 7.00362 7.08375 7.44857 7.55668 7.56586 7.62717 7.81578 8.23967 8.24574 9.19367 9.82971 10.51280 11.40868 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002995 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.070407 B = 9347.396880 C =10110.052277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.288 6.288 3 C 0.369 3.631 4 N -0.542 5.542 5 C 0.184 3.816 6 C -0.107 4.107 7 C -0.216 4.216 8 C -0.006 4.006 9 C -0.202 4.202 10 C 0.570 3.430 11 O -0.530 6.530 12 N -0.601 5.601 13 C 0.111 3.889 14 C -0.129 4.129 15 C 0.169 3.831 16 H 0.020 0.980 17 C -0.123 4.123 18 H 0.080 0.920 19 C -0.136 4.136 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.225 4.225 23 H 0.079 0.921 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.127 3.873 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.251 0.749 48 H 0.091 0.909 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 14.678 -14.827 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.193 6.193 3 C 0.189 3.811 4 N -0.268 5.268 5 C 0.047 3.953 6 C -0.164 4.164 7 C -0.236 4.236 8 C -0.032 4.032 9 C -0.208 4.208 10 C 0.357 3.643 11 O -0.406 6.406 12 N -0.334 5.334 13 C -0.013 4.013 14 C -0.168 4.168 15 C 0.060 3.940 16 H 0.037 0.963 17 C -0.144 4.144 18 H 0.098 0.902 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.353 4.353 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.006 3.994 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.109 0.891 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.690 13.750 -15.025 23.002 hybrid contribution 0.595 0.424 1.157 1.369 sum -10.095 14.175 -13.868 22.252 Atomic orbital electron populations 1.22926 0.76986 1.03353 1.02331 1.86368 1.22980 1.23632 1.86289 1.19667 0.87866 0.84869 0.88708 1.67213 1.40289 0.98195 1.21057 1.21127 0.92169 0.91889 0.90142 1.20805 0.99315 0.92743 1.03575 1.21713 0.93796 0.99877 1.08253 1.21586 1.00884 0.89948 0.90743 1.19866 0.91648 0.95477 1.13858 1.17840 0.79416 0.85470 0.81605 1.90774 1.67637 1.43559 1.38664 1.48212 1.33687 1.26071 1.25415 1.21947 1.01614 0.90689 0.87015 1.21961 1.00920 0.99226 0.94675 1.20620 0.93936 0.91111 0.88317 0.96262 1.22628 1.00126 0.97325 0.94307 0.90188 1.22716 0.97305 0.97276 1.00181 1.21530 0.99021 0.87651 0.86497 1.44215 1.77335 1.10086 1.00284 1.19037 1.38365 0.97218 0.80675 0.90360 1.24794 1.01671 0.96111 0.97908 1.69950 1.51004 1.05613 1.30260 0.86085 0.77255 0.77638 0.85025 1.20554 1.21824 1.21790 1.21651 0.92640 0.86382 0.98747 0.88345 0.92147 0.92197 0.89780 0.90151 0.90281 0.83878 0.83509 0.91589 0.90526 0.91435 0.90570 0.92033 0.92324 0.92739 0.94362 0.93817 0.89103 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.29 -4.31 9.67 -21.48 -0.21 -4.52 16 3 C 0.37 5.24 7.50 -16.61 -0.12 5.11 16 4 N -0.54 -6.62 9.11 -9.21 -0.08 -6.70 16 5 C 0.18 1.75 6.78 -82.53 -0.56 1.19 16 6 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16 7 C -0.22 -1.82 9.71 -39.50 -0.38 -2.21 16 8 C -0.01 -0.06 7.97 -38.89 -0.31 -0.37 16 9 C -0.20 -2.79 4.53 -104.69 -0.47 -3.26 16 10 C 0.57 9.24 6.84 -12.47 -0.09 9.15 16 11 O -0.53 -10.29 16.11 1.77 0.03 -10.26 16 12 N -0.60 -9.12 2.99 -173.46 -0.52 -9.64 16 13 C 0.11 1.50 5.35 -3.27 -0.02 1.48 16 14 C -0.13 -2.21 5.50 -26.76 -0.15 -2.36 16 15 C 0.17 3.35 2.57 -67.97 -0.17 3.18 16 16 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 17 C -0.12 -2.25 2.85 -89.37 -0.26 -2.50 16 18 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 19 C -0.14 -2.54 6.54 -25.13 -0.16 -2.71 16 20 C 0.18 4.28 5.45 -1.92 -0.01 4.27 16 21 N -0.59 -14.81 3.35 -163.08 -0.55 -15.36 16 22 C -0.22 -6.10 9.88 -15.06 -0.15 -6.24 16 23 H 0.08 2.04 7.21 -52.49 -0.38 1.66 16 24 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -26.94 10.44 55.49 0.58 -26.36 16 26 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 C 0.13 2.00 5.97 -3.76 -0.02 1.97 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.30 8.07 -51.93 -0.42 -0.11 16 36 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.15 1.19 7.76 -52.49 -0.41 0.78 16 39 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.08 0.94 5.50 -51.93 -0.29 0.66 16 41 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 42 H 0.08 1.30 7.62 -51.93 -0.40 0.91 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 45 H 0.05 1.47 7.21 -51.93 -0.37 1.09 16 46 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.09 1.48 6.98 -51.93 -0.36 1.11 16 49 H 0.07 1.00 8.08 -51.92 -0.42 0.58 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -34.05 387.80 -9.12 -43.17 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.64 Total: -0.66 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.56 Total: 7.58 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.57 Total: -58.05 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.18 Total: -14.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.05 -9.12 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036835933.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.310 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds