Wall clock time and date at job start Wed Apr 1 2020 04:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35427 * 117.00261 * 2 1 4 4 N 1.32234 * 119.79946 * 359.97438 * 3 2 1 5 5 C 1.31880 * 121.80354 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.41045 * 179.97438 * 5 4 3 7 7 C 1.38354 * 121.18544 * 0.02562 * 5 4 3 8 8 C 1.38337 * 119.45861 * 359.97438 * 7 5 4 9 9 C 1.39987 * 118.34801 * 359.75836 * 8 7 5 10 10 C 1.47524 * 120.60086 * 180.24354 * 9 8 7 11 11 O 1.21590 * 120.00045 * 233.70181 * 10 9 8 12 12 N 1.34777 * 120.00067 * 53.69622 * 10 9 8 13 13 C 1.46597 * 119.68014 * 5.57215 * 12 10 9 14 14 C 1.54373 * 110.35198 * 132.09906 * 13 12 10 15 15 C 1.51524 * 107.26508 * 51.30951 * 14 13 12 16 16 H 1.09004 * 108.81168 * 53.30340 * 15 14 13 17 17 C 1.55366 * 107.78495 * 295.00215 * 15 14 13 18 18 H 1.09004 * 112.26847 * 309.15762 * 17 15 14 19 19 C 1.53737 * 100.22471 * 190.93814 * 17 15 14 20 20 C 1.55293 * 101.84041 * 39.08708 * 19 17 15 21 21 N 1.45472 * 117.34064 * 177.96261 * 15 14 13 22 22 C 1.36934 * 126.40300 * 329.35653 * 21 15 14 23 23 H 1.08000 * 120.00417 * 359.96888 * 22 21 15 24 24 C 1.38818 * 119.99592 * 179.97438 * 22 21 15 25 25 N 1.31617 * 120.00165 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99717 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47430 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47084 * 120.00016 * 26 24 22 29 29 H 1.48496 * 109.47386 * 239.99929 * 26 24 22 30 30 C 1.47716 * 119.68571 * 185.83765 * 12 10 9 31 31 H 1.08998 * 109.47782 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47214 * 300.00121 * 1 2 3 33 33 H 1.09004 * 109.47471 * 59.99684 * 1 2 3 34 34 H 1.09004 * 109.46882 * 90.00489 * 6 5 4 35 35 H 1.08997 * 109.47495 * 210.00354 * 6 5 4 36 36 H 1.09007 * 109.47066 * 330.00594 * 6 5 4 37 37 H 1.07998 * 120.27415 * 179.97438 * 7 5 4 38 38 H 1.07993 * 120.82661 * 180.02562 * 8 7 5 39 39 H 1.09010 * 109.25142 * 252.46174 * 13 12 10 40 40 H 1.08992 * 109.25822 * 11.89499 * 13 12 10 41 41 H 1.09002 * 110.03893 * 291.81452 * 14 13 12 42 42 H 1.08995 * 109.80351 * 170.67794 * 14 13 12 43 43 H 1.08996 * 110.95777 * 157.22365 * 19 17 15 44 44 H 1.09001 * 110.95662 * 280.95329 * 19 17 15 45 45 H 1.09003 * 109.91723 * 96.86934 * 20 19 17 46 46 H 1.09001 * 109.91811 * 218.16598 * 20 19 17 47 47 H 0.96996 * 119.99690 * 179.97438 * 25 24 22 48 48 H 1.09002 * 110.07230 * 351.27017 * 30 12 10 49 49 H 1.09008 * 110.06755 * 112.84964 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8771 3.5084 0.0000 6 6 1.0000 4.7339 -0.0012 7 6 3.2526 3.6575 0.0005 8 6 4.0588 2.5333 0.0011 9 6 3.4450 1.2752 0.0063 10 6 4.2569 0.0435 0.0125 11 8 4.0718 -0.8110 -0.8324 12 7 5.2040 -0.1345 0.9547 13 6 5.3396 0.8405 2.0411 14 6 5.4272 0.1184 3.4027 15 6 6.5067 -0.9381 3.2829 16 1 7.4219 -0.4664 2.9248 17 6 6.0307 -1.9868 2.2401 18 1 5.0244 -2.3499 2.4492 19 6 7.0796 -3.0885 2.4627 20 6 7.2459 -3.0629 4.0065 21 7 6.8049 -1.7261 4.4687 22 6 6.6980 -1.3101 5.7689 23 1 6.3643 -0.3069 5.9893 24 6 7.0187 -2.1780 6.8039 25 7 7.4251 -3.4007 6.5353 26 14 6.8735 -1.6104 8.5776 27 1 6.3982 -0.2039 8.6099 28 1 5.9049 -2.4763 9.2967 29 1 8.2014 -1.6998 9.2362 30 6 6.0994 -1.3070 0.8796 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.7874 5.0295 1.0262 35 1 1.5128 5.5472 -0.5146 36 1 0.0653 4.5112 -0.5161 37 1 3.6934 4.6434 0.0005 38 1 5.1349 2.6240 0.0019 39 1 6.2430 1.4300 1.8843 40 1 4.4741 1.5029 2.0396 41 1 4.4726 -0.3522 3.6380 42 1 5.6920 0.8321 4.1828 43 1 6.7062 -4.0559 2.1270 44 1 8.0173 -2.8403 1.9655 45 1 6.6252 -3.8359 4.4598 46 1 8.2917 -3.2207 4.2701 47 1 7.6495 -4.0069 7.2585 48 1 5.7567 -1.9902 0.1024 49 1 7.1203 -0.9854 0.6732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036835933.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:31 Heat of formation + Delta-G solvation = -22.026203 kcal Electronic energy + Delta-G solvation = -31286.838779 eV Core-core repulsion = 27214.348349 eV Total energy + Delta-G solvation = -4072.490429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.18743 -41.07412 -39.54636 -39.12282 -36.81843 -34.78549 -33.99018 -33.03934 -32.77659 -31.34097 -29.86071 -29.30285 -27.88707 -26.68722 -25.26903 -24.16871 -23.76308 -23.47661 -21.90870 -21.41164 -20.58204 -19.24435 -18.78801 -18.01295 -17.94479 -17.33961 -16.95382 -16.89628 -16.23552 -15.97646 -15.67645 -15.60973 -15.34464 -15.08321 -15.01814 -14.67744 -14.64014 -14.19758 -14.04698 -13.81670 -13.48053 -13.39705 -13.31071 -13.12548 -13.09079 -12.99221 -12.74671 -12.72050 -12.49008 -12.17132 -12.03815 -11.96823 -11.78834 -11.62219 -11.53031 -11.27657 -11.04583 -10.83453 -10.71635 -10.60065 -9.75594 -9.46666 -8.86861 -7.82909 -5.17301 -0.25166 0.21933 1.45942 1.46873 1.52143 1.56695 1.91746 2.03021 2.50668 2.62913 3.07070 3.35753 3.38691 3.55897 3.74746 3.81240 3.87348 3.92839 4.00194 4.18032 4.20248 4.22260 4.33233 4.33616 4.34706 4.38901 4.49466 4.64197 4.65260 4.70033 4.73041 4.77890 4.80816 4.83562 4.88998 4.95670 5.00241 5.05272 5.08163 5.17656 5.19300 5.45316 5.49085 5.53586 5.54033 5.66733 5.76827 6.13150 6.21175 6.29890 6.74183 7.04591 7.09871 7.80109 8.49038 9.29270 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002995 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.070407 B = 9347.396880 C =10110.052277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.344 3.656 4 N -0.556 5.556 5 C 0.176 3.824 6 C -0.105 4.105 7 C -0.201 4.201 8 C -0.002 4.002 9 C -0.231 4.231 10 C 0.571 3.429 11 O -0.572 6.572 12 N -0.601 5.601 13 C 0.121 3.879 14 C -0.123 4.123 15 C 0.160 3.840 16 H 0.033 0.967 17 C -0.111 4.111 18 H 0.053 0.947 19 C -0.121 4.121 20 C 0.183 3.817 21 N -0.616 5.616 22 C -0.228 4.228 23 H 0.088 0.912 24 C -0.072 4.072 25 N -0.955 5.955 26 Si 0.974 3.026 27 H -0.261 1.261 28 H -0.298 1.298 29 H -0.294 1.294 30 C 0.135 3.865 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.186 0.814 38 H 0.172 0.828 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.013 0.987 46 H 0.007 0.993 47 H 0.244 0.756 48 H 0.084 0.916 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 18.788 -15.875 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.165 3.835 4 N -0.281 5.281 5 C 0.039 3.961 6 C -0.162 4.162 7 C -0.221 4.221 8 C -0.027 4.027 9 C -0.237 4.237 10 C 0.359 3.641 11 O -0.452 6.452 12 N -0.333 5.333 13 C -0.002 4.002 14 C -0.162 4.162 15 C 0.053 3.947 16 H 0.050 0.950 17 C -0.131 4.131 18 H 0.072 0.928 19 C -0.159 4.159 20 C 0.058 3.942 21 N -0.340 5.340 22 C -0.357 4.357 23 H 0.106 0.894 24 C -0.264 4.264 25 N -0.604 5.604 26 Si 0.803 3.197 27 H -0.185 1.185 28 H -0.225 1.225 29 H -0.221 1.221 30 C 0.013 3.987 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.203 0.797 38 H 0.190 0.810 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.032 0.968 46 H 0.025 0.975 47 H 0.053 0.947 48 H 0.103 0.897 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.641 17.917 -16.089 26.327 hybrid contribution 0.513 -0.765 1.460 1.726 sum -10.129 17.152 -14.629 24.714 Atomic orbital electron populations 1.23068 0.75537 1.04395 1.02657 1.86312 1.24742 1.25001 1.86756 1.19898 0.88335 0.85177 0.90058 1.67273 1.40542 0.98666 1.21639 1.21920 0.93677 0.91971 0.88538 1.20937 0.98852 0.91765 1.04609 1.22177 0.93079 1.01129 1.05666 1.21932 1.02299 0.88858 0.89598 1.19843 0.91322 0.95698 1.16821 1.18243 0.79024 0.85888 0.80915 1.90740 1.68707 1.45336 1.40402 1.48258 1.33384 1.26020 1.25608 1.21997 1.04064 0.90028 0.84102 1.21886 0.98465 0.98545 0.97317 1.20862 0.95189 0.91891 0.86750 0.95010 1.22453 0.98308 0.96699 0.95656 0.92848 1.22587 0.98839 0.98481 0.96037 1.21293 0.96152 0.86778 0.90011 1.44508 1.77409 1.10994 1.01135 1.19458 1.36762 0.97496 0.81939 0.89378 1.25638 1.02449 0.96408 1.01938 1.70177 1.52712 1.06754 1.30805 0.85060 0.76644 0.77903 0.80088 1.18543 1.22542 1.22088 1.21546 0.94122 0.86605 0.96377 0.87028 0.91894 0.91684 0.88631 0.87287 0.90697 0.79707 0.81016 0.88200 0.88830 0.93911 0.90245 0.90740 0.89792 0.96832 0.97467 0.94653 0.89749 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 1.99 16 2 O -0.32 -9.93 9.67 -83.86 -0.81 -10.74 16 3 C 0.34 9.65 7.50 85.13 0.64 10.29 16 4 N -0.56 -12.82 9.11 -296.06 -2.70 -15.51 16 5 C 0.18 2.79 6.78 42.58 0.29 3.08 16 6 C -0.10 -0.83 10.16 71.24 0.72 -0.10 16 7 C -0.20 -2.47 9.71 22.32 0.22 -2.25 16 8 C 0.00 -0.03 7.97 22.72 0.18 0.15 16 9 C -0.23 -6.02 4.53 -19.91 -0.09 -6.11 16 10 C 0.57 18.06 6.84 86.69 0.59 18.65 16 11 O -0.57 -22.49 16.11 -0.64 -0.01 -22.50 16 12 N -0.60 -17.15 2.99 -820.95 -2.46 -19.61 16 13 C 0.12 2.91 5.35 86.83 0.46 3.37 16 14 C -0.12 -4.06 5.50 30.58 0.17 -3.89 16 15 C 0.16 6.22 2.57 45.51 0.12 6.34 16 16 H 0.03 1.21 7.92 -2.38 -0.02 1.19 16 17 C -0.11 -3.99 2.85 -9.98 -0.03 -4.02 16 18 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 19 C -0.12 -4.50 6.54 31.63 0.21 -4.30 16 20 C 0.18 9.15 5.45 86.85 0.47 9.63 16 21 N -0.62 -31.18 3.35 -669.88 -2.24 -33.42 16 22 C -0.23 -12.48 9.88 84.04 0.83 -11.65 16 23 H 0.09 4.53 7.21 -2.91 -0.02 4.51 16 24 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 25 N -0.95 -58.24 10.44 21.65 0.23 -58.02 16 26 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 27 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 30 C 0.14 4.02 5.97 85.89 0.51 4.53 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.11 0.26 8.07 -2.39 -0.02 0.24 16 36 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 38 H 0.17 1.91 7.76 -2.91 -0.02 1.89 16 39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.09 2.01 5.50 -2.39 -0.01 2.00 16 41 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 42 H 0.08 2.56 7.62 -2.39 -0.02 2.55 16 43 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 45 H 0.01 0.77 7.21 -2.39 -0.02 0.75 16 46 H 0.01 0.39 7.77 -2.39 -0.02 0.37 16 47 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.08 2.68 6.98 -2.39 -0.02 2.66 16 49 H 0.10 2.40 8.08 -2.38 -0.02 2.38 16 Total: -1.00 -79.49 387.80 1.92 -77.57 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.95 Total: 12.33 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 6.94 Total: 22.10 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -7.17 Total: -126.56 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.82 Total: -33.24 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -79.49 1.92 -77.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036835933.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.546 kcal (2) G-P(sol) polarization free energy of solvation -79.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds