Wall clock time and date at job start Wed Apr 1 2020 04:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38358 * 119.40643 * 2 1 4 4 C 1.38340 * 119.45588 * 179.97438 * 3 2 1 5 5 C 1.39984 * 118.35370 * 0.02562 * 4 3 2 6 6 C 1.47515 * 120.59797 * 180.02562 * 5 4 3 7 7 O 1.21596 * 119.99839 * 153.90932 * 6 5 4 8 8 N 1.34775 * 120.00395 * 333.90873 * 6 5 4 9 9 C 1.48149 * 127.02751 * 185.94827 * 8 6 5 10 10 C 1.55045 * 103.31534 * 140.98441 * 9 8 6 11 11 C 1.54180 * 102.72490 * 37.01124 * 10 9 8 12 12 C 1.47623 * 127.01792 * 5.94045 * 8 6 5 13 13 C 1.52489 * 110.01901 * 219.30884 * 11 10 9 14 14 C 1.53128 * 109.59187 * 298.36858 * 13 11 10 15 15 C 1.53189 * 109.29230 * 299.51656 * 14 13 11 16 16 N 1.46929 * 108.88867 * 55.06977 * 15 14 13 17 17 C 1.36937 * 120.68094 * 125.94442 * 16 15 14 18 18 H 1.08002 * 119.99647 * 333.20538 * 17 16 15 19 19 C 1.38808 * 120.00327 * 153.19611 * 17 16 15 20 20 N 1.31614 * 120.00173 * 159.61239 * 19 17 16 21 21 Si 1.86803 * 119.99858 * 339.61935 * 19 17 16 22 22 H 1.48500 * 109.47162 * 95.06968 * 21 19 17 23 23 H 1.48497 * 109.47156 * 215.06997 * 21 19 17 24 24 H 1.48498 * 109.47236 * 335.07063 * 21 19 17 25 25 C 1.47024 * 118.64014 * 305.97318 * 16 15 14 26 26 C 1.40282 * 118.80162 * 0.27177 * 5 4 3 27 27 O 1.35428 * 119.79682 * 179.70579 * 26 5 4 28 28 N 1.31881 * 119.40972 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47247 * 90.00245 * 1 2 3 30 30 H 1.09007 * 109.47013 * 210.00419 * 1 2 3 31 31 H 1.08998 * 109.47072 * 329.99713 * 1 2 3 32 32 H 1.07998 * 120.26767 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.82026 * 180.02562 * 4 3 2 34 34 H 1.09001 * 110.64884 * 259.43580 * 9 8 6 35 35 H 1.08998 * 110.65571 * 22.36349 * 9 8 6 36 36 H 1.08999 * 110.75736 * 278.70355 * 10 9 8 37 37 H 1.08999 * 110.76182 * 155.31772 * 10 9 8 38 38 H 1.09002 * 109.96523 * 85.96918 * 12 8 6 39 39 H 1.08991 * 110.00739 * 324.71439 * 12 8 6 40 40 H 1.09005 * 109.44206 * 178.34244 * 13 11 10 41 41 H 1.09006 * 109.45040 * 58.40093 * 13 11 10 42 42 H 1.09001 * 109.49922 * 59.45951 * 14 13 11 43 43 H 1.08996 * 109.49792 * 179.57007 * 14 13 11 44 44 H 1.08995 * 109.56765 * 174.89615 * 15 14 13 45 45 H 1.09009 * 109.57063 * 295.25166 * 15 14 13 46 46 H 0.97003 * 120.00111 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.58554 * 172.58205 * 25 16 15 48 48 H 1.09010 * 109.58188 * 292.98956 * 25 16 15 49 49 H 0.96701 * 114.00526 * 90.00014 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.2356 -0.0248 0.0005 6 6 5.7096 -0.0813 0.0016 7 8 6.2806 -1.0499 0.4648 8 7 6.4237 0.9405 -0.5107 9 6 7.8919 0.9961 -0.7006 10 6 8.0486 1.7223 -2.0615 11 6 6.9139 2.7654 -2.0225 12 6 5.9023 2.2331 -0.9973 13 6 6.2653 2.8828 -3.3976 14 6 7.3044 3.3591 -4.4165 15 6 7.8353 4.7324 -3.9936 16 7 8.3485 4.6416 -2.6199 17 6 9.6250 5.0387 -2.3231 18 1 10.3905 5.0086 -3.0844 19 6 9.9350 5.4799 -1.0441 20 7 11.1852 5.4791 -0.6326 21 14 8.5778 6.0748 0.0933 22 1 8.1411 4.9580 0.9693 23 1 9.0871 7.1905 0.9305 24 1 7.4262 6.5486 -0.7157 25 6 7.4635 4.1152 -1.5704 26 6 3.4758 -1.2040 -0.0059 27 8 4.0992 -2.4063 -0.0121 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6410 2.1375 -0.0004 33 1 4.1223 2.1345 0.0010 34 1 8.3613 1.5706 0.0979 35 1 8.3118 -0.0087 -0.7477 36 1 7.9062 1.0272 -2.8889 37 1 9.0205 2.2110 -2.1289 38 1 5.8100 2.9335 -0.1672 39 1 4.9319 2.0888 -1.4721 40 1 5.4460 3.6004 -3.3522 41 1 5.8790 1.9097 -3.7010 42 1 8.1285 2.6468 -4.4558 43 1 6.8411 3.4352 -5.4001 44 1 8.6393 5.0353 -4.6644 45 1 7.0284 5.4642 -4.0343 46 1 11.4018 5.7871 0.2614 47 1 8.0275 3.9891 -0.6462 48 1 6.6390 4.8089 -1.4058 49 1 4.2801 -2.7602 0.8695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040423309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:55 Heat of formation + Delta-G solvation = -22.349719 kcal Electronic energy + Delta-G solvation = -31757.438529 eV Core-core repulsion = 27684.934071 eV Total energy + Delta-G solvation = -4072.504458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20888 -41.16622 -39.69029 -38.34611 -37.35682 -34.93227 -34.42169 -32.88583 -32.64563 -32.30234 -30.82559 -28.93306 -27.28617 -27.12028 -25.05570 -24.40673 -24.05772 -23.36998 -22.18398 -21.17130 -19.98590 -19.59882 -18.67277 -18.32045 -17.97702 -17.39372 -17.03710 -16.78746 -16.60127 -15.98387 -15.68665 -15.46742 -15.34478 -15.18890 -14.91885 -14.63292 -14.47761 -14.24691 -14.14381 -13.85927 -13.68982 -13.48872 -13.40166 -13.23448 -13.10052 -13.03876 -12.67934 -12.65002 -12.54374 -12.31245 -12.07676 -11.87399 -11.63871 -11.46573 -11.35582 -11.23397 -11.09946 -10.98908 -10.63058 -10.51045 -10.02017 -9.75802 -8.87393 -8.12249 -5.42893 -0.51324 0.01929 1.29806 1.42948 1.51176 1.57148 1.75873 2.38640 2.44242 2.64645 3.04449 3.19707 3.32106 3.54335 3.56126 3.63992 3.75565 3.79454 3.90569 4.15691 4.18387 4.24471 4.26966 4.30902 4.38245 4.39002 4.53460 4.61648 4.65224 4.66049 4.73343 4.80526 4.81478 4.88840 4.93285 4.96349 5.00846 5.07316 5.11325 5.14543 5.18596 5.28399 5.32239 5.42749 5.48820 5.60629 5.90833 6.17193 6.34698 6.45454 6.77453 6.90799 6.96376 7.67713 8.07275 9.07622 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.003323 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.193843 B = 8423.359984 C = 8611.781277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.175 4.175 4 C -0.038 4.038 5 C -0.222 4.222 6 C 0.581 3.419 7 O -0.570 6.570 8 N -0.610 5.610 9 C 0.106 3.894 10 C -0.106 4.106 11 C -0.082 4.082 12 C 0.099 3.901 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.142 3.858 16 N -0.614 5.614 17 C -0.238 4.238 18 H 0.050 0.950 19 C -0.036 4.036 20 N -0.960 5.960 21 Si 0.939 3.061 22 H -0.278 1.278 23 H -0.319 1.319 24 H -0.248 1.248 25 C 0.139 3.861 26 C 0.356 3.644 27 O -0.486 6.486 28 N -0.530 5.530 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.188 0.812 33 H 0.170 0.830 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.040 0.960 46 H 0.259 0.741 47 H 0.045 0.955 48 H 0.043 0.957 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.768 -7.293 -0.863 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.194 4.194 4 C -0.063 4.063 5 C -0.229 4.229 6 C 0.371 3.629 7 O -0.450 6.450 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.084 4.084 12 C -0.024 4.024 13 C -0.127 4.127 14 C -0.167 4.167 15 C 0.017 3.983 16 N -0.338 5.338 17 C -0.368 4.368 18 H 0.067 0.933 19 C -0.231 4.231 20 N -0.606 5.606 21 Si 0.768 3.232 22 H -0.205 1.205 23 H -0.248 1.248 24 H -0.172 1.172 25 C 0.014 3.986 26 C 0.176 3.824 27 O -0.295 6.295 28 N -0.251 5.251 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.205 0.795 33 H 0.187 0.813 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -24.845 -8.589 -1.086 26.310 hybrid contribution 1.393 0.858 1.375 2.137 sum -23.452 -7.731 0.289 24.695 Atomic orbital electron populations 1.20972 0.85417 1.05208 1.04772 1.22035 0.98824 0.86901 0.89343 1.22377 0.93614 1.00897 1.02521 1.22549 0.95789 0.97185 0.90778 1.20868 0.93012 0.95829 1.13148 1.17832 0.86696 0.81088 0.77291 1.90737 1.72551 1.33855 1.47864 1.48753 1.08338 1.16087 1.61056 1.22479 0.80153 1.01046 0.97909 1.22561 0.99564 0.96782 0.95507 1.21559 0.94713 0.95420 0.96714 1.22746 0.98717 0.83485 0.97418 1.21405 0.97697 1.01857 0.91785 1.21934 0.98539 0.97212 0.98970 1.21132 0.96984 0.95816 0.84353 1.44416 1.11333 1.72760 1.05286 1.18797 0.85526 1.35892 0.96544 0.93272 1.25867 0.97480 1.00407 0.99318 1.69973 1.19762 1.51887 1.19014 0.86024 0.80844 0.77367 0.78948 1.20493 1.24837 1.17169 1.21341 0.93108 0.92623 0.91531 1.19198 0.86679 0.84862 0.91653 1.84600 1.76819 1.32604 1.35523 1.67201 1.08623 1.32177 1.17076 0.88466 0.90565 0.87166 0.79482 0.81255 0.92132 0.90553 0.90450 0.91142 0.90002 0.87103 0.89998 0.91031 0.93269 0.89529 0.93253 0.94216 0.93259 0.93685 0.93923 0.72043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 71.23 0.72 -0.09 16 2 C 0.17 2.59 6.78 42.58 0.29 2.88 16 3 C -0.17 -2.15 9.71 22.32 0.22 -1.93 16 4 C -0.04 -0.65 8.12 22.72 0.18 -0.47 16 5 C -0.22 -5.56 5.78 -19.91 -0.12 -5.67 16 6 C 0.58 18.05 7.62 86.69 0.66 18.71 16 7 O -0.57 -21.31 15.90 14.88 0.24 -21.07 16 8 N -0.61 -17.78 3.30 -813.42 -2.68 -20.46 16 9 C 0.11 3.47 7.07 86.76 0.61 4.08 16 10 C -0.11 -3.39 5.00 31.69 0.16 -3.24 16 11 C -0.08 -2.32 0.63 -51.90 -0.03 -2.35 16 12 C 0.10 2.34 4.45 86.35 0.38 2.72 16 13 C -0.09 -2.07 4.34 30.47 0.13 -1.94 16 14 C -0.13 -3.35 5.89 30.70 0.18 -3.17 16 15 C 0.14 4.78 6.50 86.36 0.56 5.34 16 16 N -0.61 -25.94 2.29 -699.97 -1.60 -27.54 16 17 C -0.24 -12.72 10.04 84.03 0.84 -11.88 16 18 H 0.05 2.93 8.05 -2.91 -0.02 2.91 16 19 C -0.04 -2.05 5.24 84.86 0.44 -1.60 16 20 N -0.96 -59.22 13.97 21.65 0.30 -58.91 16 21 Si 0.94 43.98 24.34 68.60 1.67 45.65 16 22 H -0.28 -12.33 6.71 99.48 0.67 -11.66 16 23 H -0.32 -15.65 7.11 99.48 0.71 -14.94 16 24 H -0.25 -10.61 6.42 99.48 0.64 -9.98 16 25 C 0.14 5.10 2.54 86.14 0.22 5.32 16 26 C 0.36 9.30 7.74 85.13 0.66 9.96 16 27 O -0.49 -13.30 11.99 -68.33 -0.82 -14.12 16 28 N -0.53 -12.18 10.28 -296.06 -3.04 -15.22 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.11 0.23 8.07 -2.39 -0.02 0.21 16 32 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.17 2.40 4.63 -2.91 -0.01 2.38 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 2.54 7.91 -2.39 -0.02 2.52 16 36 H 0.08 2.28 7.63 -2.39 -0.02 2.26 16 37 H 0.07 2.80 7.48 -2.39 -0.02 2.78 16 38 H 0.08 1.81 7.10 -2.39 -0.02 1.80 16 39 H 0.11 1.97 5.39 -2.39 -0.01 1.96 16 40 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.05 1.45 7.13 -2.39 -0.02 1.44 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.05 1.77 7.93 -2.39 -0.02 1.75 16 45 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.04 1.92 4.53 -2.38 -0.01 1.91 16 48 H 0.04 1.46 6.92 -2.38 -0.02 1.44 16 49 H 0.42 8.52 9.06 -74.06 -0.67 7.85 16 Total: -1.00 -76.24 375.10 0.39 -75.85 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.21 Total: 19.18 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.12 Total: 16.66 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -7.02 Total: -122.14 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.58 Total: -35.20 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.67 Total: 45.65 kcal Total: -76.24 0.39 -75.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040423309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.496 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds