Wall clock time and date at job start Wed Apr 1 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35686 * 117.00144 * 2 1 4 4 C 1.38890 * 119.62470 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.94996 * 179.97438 * 4 3 2 6 6 C 1.48153 * 120.89629 * 180.02562 * 5 4 3 7 7 O 1.21508 * 120.00163 * 327.96400 * 6 5 4 8 8 N 1.34783 * 119.99912 * 147.95580 * 6 5 4 9 9 C 1.47157 * 121.21298 * 174.40520 * 8 6 5 10 10 C 1.52838 * 107.97627 * 122.69600 * 9 8 6 11 11 C 1.53098 * 110.54090 * 57.37464 * 10 9 8 12 12 H 1.08994 * 112.49683 * 70.51477 * 11 10 9 13 13 C 1.56107 * 106.34811 * 195.42068 * 11 10 9 14 14 C 1.54506 * 102.62518 * 78.36927 * 13 11 10 15 15 N 1.47439 * 107.14870 * 22.83047 * 14 13 11 16 16 C 1.36935 * 126.06071 * 181.64734 * 15 14 13 17 17 H 1.07995 * 120.00072 * 186.80529 * 16 15 14 18 18 C 1.38813 * 119.99913 * 6.80860 * 16 15 14 19 19 N 1.31618 * 120.00026 * 7.95437 * 18 16 15 20 20 Si 1.86800 * 119.99915 * 187.95003 * 18 16 15 21 21 H 1.48503 * 109.47071 * 85.01442 * 20 18 16 22 22 H 1.48502 * 109.47348 * 205.01040 * 20 18 16 23 23 H 1.48494 * 109.47404 * 325.01445 * 20 18 16 24 24 C 1.46466 * 107.87825 * 1.63096 * 15 14 13 25 25 H 1.08996 * 108.42122 * 89.23146 * 24 15 14 26 26 C 1.46753 * 121.21224 * 354.38517 * 8 6 5 27 27 C 1.39973 * 118.21202 * 0.28222 * 5 4 3 28 28 C 1.37974 * 119.13578 * 359.47602 * 27 5 4 29 29 C 1.50699 * 119.51370 * 180.23004 * 28 27 5 30 30 N 1.31914 * 120.97840 * 0.53356 * 28 27 5 31 31 H 1.08998 * 109.46847 * 299.99644 * 1 2 3 32 32 H 1.08998 * 109.47167 * 59.99081 * 1 2 3 33 33 H 1.08994 * 109.47076 * 179.97438 * 1 2 3 34 34 H 1.08004 * 120.52418 * 0.03279 * 4 3 2 35 35 H 1.09004 * 109.75846 * 3.07848 * 9 8 6 36 36 H 1.09003 * 109.75915 * 242.31714 * 9 8 6 37 37 H 1.08998 * 109.25377 * 177.62953 * 10 9 8 38 38 H 1.08996 * 109.25739 * 297.10854 * 10 9 8 39 39 H 1.08998 * 110.78814 * 320.08135 * 13 11 10 40 40 H 1.08997 * 110.93333 * 196.71651 * 13 11 10 41 41 H 1.09009 * 109.89870 * 263.45424 * 14 13 11 42 42 H 1.08998 * 110.05918 * 142.30166 * 14 13 11 43 43 H 0.97005 * 120.00028 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.23106 * 352.85222 * 26 8 6 45 45 H 1.08998 * 109.22722 * 112.21507 * 26 8 6 46 46 H 1.07998 * 120.42782 * 179.71778 * 27 5 4 47 47 H 1.09003 * 109.46740 * 270.30019 * 29 28 27 48 48 H 1.08996 * 109.47255 * 30.29419 * 29 28 27 49 49 H 1.08997 * 109.47249 * 150.30223 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5283 2.6415 0.0000 7 8 6.2050 1.8010 0.5585 8 7 6.1212 3.6812 -0.6198 9 6 7.5751 3.8918 -0.5340 10 6 8.1334 3.9129 -1.9566 11 6 7.4483 5.0019 -2.7865 12 1 7.7379 6.0061 -2.4772 13 6 7.7787 4.6895 -4.2798 14 6 6.7967 3.5434 -4.6104 15 7 5.6804 3.6374 -3.6518 16 6 4.6082 2.7889 -3.5774 17 1 3.7893 3.0107 -2.9092 18 6 4.5738 1.6436 -4.3610 19 7 5.6339 1.2898 -5.0562 20 14 3.0231 0.6043 -4.4285 21 1 2.0996 1.1590 -5.4506 22 1 3.3782 -0.7921 -4.7881 23 1 2.3586 0.6198 -3.1006 24 6 5.9217 4.7991 -2.7931 25 1 5.4707 5.6736 -3.2618 26 6 5.3405 4.6442 -1.4052 27 6 3.2394 3.6636 0.0050 28 6 1.8681 3.5116 -0.0008 29 6 0.9858 4.7333 -0.0007 30 7 1.3178 2.3127 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 4.0230 0.3682 0.0004 35 1 8.0326 3.0785 0.0294 36 1 7.7813 4.8429 -0.0430 37 1 9.2048 4.1101 -1.9194 38 1 7.9624 2.9434 -2.4244 39 1 8.8112 4.3568 -4.3862 40 1 7.5867 5.5572 -4.9109 41 1 7.2987 2.5818 -4.5021 42 1 6.4223 3.6537 -5.6281 43 1 5.6098 0.4896 -5.6041 44 1 4.3117 4.2929 -1.4840 45 1 5.3514 5.6108 -0.9015 46 1 3.6806 4.6493 0.0093 47 1 0.7734 5.0280 1.0270 48 1 1.4943 5.5488 -0.5148 49 1 0.0514 4.5067 -0.5142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042202223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:39 Heat of formation + Delta-G solvation = 10.800169 kcal Electronic energy + Delta-G solvation = -32927.836791 eV Core-core repulsion = 28856.769820 eV Total energy + Delta-G solvation = -4071.066971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.86359 -39.75280 -38.23715 -37.61845 -34.94255 -33.40236 -32.69220 -31.87126 -30.96236 -29.12984 -28.57562 -28.11926 -26.54212 -25.13831 -24.26569 -23.35165 -22.73533 -21.90155 -20.04393 -19.85718 -18.60888 -17.78102 -17.20294 -16.70807 -16.01852 -15.80824 -15.62387 -15.47415 -14.91788 -14.72680 -14.34105 -14.09012 -13.99781 -13.90398 -13.70037 -13.35035 -13.03024 -12.72833 -12.62962 -12.36734 -12.33354 -12.12058 -11.94142 -11.65305 -11.55343 -11.47427 -11.29139 -10.95964 -10.86127 -10.81538 -10.72129 -10.17617 -10.01461 -9.91854 -9.83208 -9.75445 -9.57528 -9.51807 -9.19163 -8.62426 -8.20965 -8.18336 -6.81840 -5.70180 -3.06466 1.05780 1.31893 2.95156 3.23313 3.39577 3.45611 3.46819 3.48961 4.00908 4.27732 4.48733 4.59826 4.98866 5.06249 5.14137 5.25119 5.28409 5.33937 5.35507 5.38281 5.48578 5.50044 5.53942 5.57747 5.67036 5.67351 5.70023 5.74277 5.77112 5.90952 5.96485 5.99782 6.02853 6.13731 6.20466 6.26278 6.29802 6.34774 6.45921 6.56038 6.63380 6.65477 6.95081 7.02049 7.37260 7.45004 7.62881 7.76648 7.81772 7.98606 8.25516 8.48429 9.18259 9.81800 10.48062 11.38492 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.005622 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.566558 B = 4979.550095 C = 6192.508395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.306 6.306 3 C 0.326 3.674 4 C -0.133 4.133 5 C -0.026 4.026 6 C 0.575 3.425 7 O -0.541 6.541 8 N -0.581 5.581 9 C 0.117 3.883 10 C -0.123 4.123 11 C -0.102 4.102 12 H 0.075 0.925 13 C -0.141 4.141 14 C 0.169 3.831 15 N -0.586 5.586 16 C -0.221 4.221 17 H 0.072 0.928 18 C 0.001 3.999 19 N -0.914 5.914 20 Si 0.895 3.105 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.152 3.848 25 H 0.028 0.972 26 C 0.089 3.911 27 C -0.186 4.186 28 C 0.159 3.841 29 C -0.101 4.101 30 N -0.531 5.531 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.026 0.974 43 H 0.251 0.749 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.147 0.853 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 8.688 9.816 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.147 3.853 4 C -0.154 4.154 5 C -0.037 4.037 6 C 0.363 3.637 7 O -0.419 6.419 8 N -0.313 5.313 9 C -0.005 4.005 10 C -0.161 4.161 11 C -0.122 4.122 12 H 0.094 0.906 13 C -0.179 4.179 14 C 0.045 3.955 15 N -0.311 5.311 16 C -0.349 4.349 17 H 0.089 0.911 18 C -0.196 4.196 19 N -0.561 5.561 20 Si 0.726 3.274 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.044 3.956 25 H 0.046 0.954 26 C -0.034 4.034 27 C -0.207 4.207 28 C 0.023 3.977 29 C -0.158 4.158 30 N -0.257 5.257 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.079 0.921 46 H 0.165 0.835 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.307 7.665 9.996 13.312 hybrid contribution -0.185 -0.525 -0.467 0.727 sum -4.492 7.140 9.529 12.726 Atomic orbital electron populations 1.22822 0.77527 1.02716 1.02302 1.86255 1.22688 1.24412 1.87896 1.19503 0.88900 0.84497 0.92410 1.20981 0.91835 0.98907 1.03682 1.19926 0.93918 0.93077 0.96743 1.17896 0.86524 0.80753 0.78529 1.90728 1.64924 1.39733 1.46565 1.47632 1.08101 1.26708 1.48826 1.21558 0.79773 1.01323 0.97870 1.21842 0.98276 1.01334 0.94671 1.22420 0.96514 0.97249 0.96004 0.90629 1.23117 0.99873 0.99952 0.94964 1.21325 0.86931 0.95092 0.92157 1.44259 1.23887 1.29043 1.33938 1.18745 0.94839 1.00344 1.20994 0.91052 1.24690 0.97168 0.97490 1.00291 1.69918 1.26990 1.25902 1.33255 0.86369 0.83056 0.79984 0.78019 1.21714 1.21640 1.20330 1.20738 0.92817 0.92221 0.89835 0.95449 1.22166 0.97906 0.91065 0.92291 1.22125 0.93924 0.99313 1.05293 1.20744 0.91558 0.91797 0.93611 1.20711 0.99233 0.92943 1.02926 1.66907 1.41154 0.98438 1.19167 0.92418 0.92324 0.88828 0.83436 0.89461 0.91823 0.92014 0.89846 0.92222 0.92860 0.91779 0.95557 0.93819 0.87842 0.92127 0.83525 0.90402 0.90256 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 101.05 1.05 1.59 16 2 O -0.31 -5.35 10.47 -18.76 -0.20 -5.55 16 3 C 0.33 6.06 7.49 -17.16 -0.13 5.94 16 4 C -0.13 -2.61 9.64 -38.84 -0.37 -2.98 16 5 C -0.03 -0.49 5.41 -104.68 -0.57 -1.06 16 6 C 0.58 11.46 7.48 -12.19 -0.09 11.37 16 7 O -0.54 -12.13 16.31 5.36 0.09 -12.05 16 8 N -0.58 -10.27 2.97 -175.09 -0.52 -10.79 16 9 C 0.12 1.83 6.44 -3.77 -0.02 1.80 16 10 C -0.12 -2.01 5.04 -26.76 -0.13 -2.15 16 11 C -0.10 -1.63 3.68 -88.38 -0.33 -1.96 16 12 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 13 C -0.14 -2.48 6.33 -24.28 -0.15 -2.63 16 14 C 0.17 3.93 4.73 -2.74 -0.01 3.92 16 15 N -0.59 -13.77 3.20 -164.41 -0.53 -14.30 16 16 C -0.22 -5.81 9.62 -15.06 -0.14 -5.96 16 17 H 0.07 1.86 6.64 -52.49 -0.35 1.51 16 18 C 0.00 0.02 5.45 -17.43 -0.09 -0.07 16 19 N -0.91 -26.66 10.54 55.49 0.59 -26.08 16 20 Si 0.90 22.74 29.56 -169.99 -5.03 17.71 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.15 2.81 2.97 -68.30 -0.20 2.61 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 C 0.09 1.46 4.06 -4.78 -0.02 1.44 16 27 C -0.19 -2.88 7.14 -39.03 -0.28 -3.16 16 28 C 0.16 2.38 6.77 -82.65 -0.56 1.82 16 29 C -0.10 -1.06 10.16 36.01 0.37 -0.69 16 30 N -0.53 -9.02 9.09 -9.60 -0.09 -9.11 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.15 2.96 8.02 -52.48 -0.42 2.54 16 35 H 0.09 1.45 7.06 -51.93 -0.37 1.09 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.74 6.85 -51.93 -0.36 1.39 16 39 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.70 6.48 -51.92 -0.34 1.36 16 42 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.10 1.81 2.89 -51.93 -0.15 1.66 16 45 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 46 H 0.15 1.88 5.81 -52.49 -0.31 1.58 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -33.11 381.78 -8.94 -42.04 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.31 Total: 2.53 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -1.70 Total: 9.83 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.55 Total: -60.27 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.11 Total: -17.60 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.11 -8.94 -42.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042202223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.843 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds