Wall clock time and date at job start Wed Apr 1 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35686 * 117.00144 * 2 1 4 4 C 1.38890 * 119.62470 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.94996 * 179.97438 * 4 3 2 6 6 C 1.48153 * 120.89629 * 180.02562 * 5 4 3 7 7 O 1.21508 * 120.00163 * 327.96400 * 6 5 4 8 8 N 1.34783 * 119.99912 * 147.95580 * 6 5 4 9 9 C 1.47157 * 121.21298 * 174.40520 * 8 6 5 10 10 C 1.52838 * 107.97627 * 122.69600 * 9 8 6 11 11 C 1.53098 * 110.54090 * 57.37464 * 10 9 8 12 12 H 1.08994 * 112.49683 * 70.51477 * 11 10 9 13 13 C 1.56107 * 106.34811 * 195.42068 * 11 10 9 14 14 C 1.54506 * 102.62518 * 78.36927 * 13 11 10 15 15 N 1.47439 * 107.14870 * 22.83047 * 14 13 11 16 16 C 1.36935 * 126.06071 * 181.64734 * 15 14 13 17 17 H 1.07995 * 120.00072 * 186.80529 * 16 15 14 18 18 C 1.38813 * 119.99913 * 6.80860 * 16 15 14 19 19 N 1.31618 * 120.00026 * 7.95437 * 18 16 15 20 20 Si 1.86800 * 119.99915 * 187.95003 * 18 16 15 21 21 H 1.48503 * 109.47071 * 85.01442 * 20 18 16 22 22 H 1.48502 * 109.47348 * 205.01040 * 20 18 16 23 23 H 1.48494 * 109.47404 * 325.01445 * 20 18 16 24 24 C 1.46466 * 107.87825 * 1.63096 * 15 14 13 25 25 H 1.08996 * 108.42122 * 89.23146 * 24 15 14 26 26 C 1.46753 * 121.21224 * 354.38517 * 8 6 5 27 27 C 1.39973 * 118.21202 * 0.28222 * 5 4 3 28 28 C 1.37974 * 119.13578 * 359.47602 * 27 5 4 29 29 C 1.50699 * 119.51370 * 180.23004 * 28 27 5 30 30 N 1.31914 * 120.97840 * 0.53356 * 28 27 5 31 31 H 1.08998 * 109.46847 * 299.99644 * 1 2 3 32 32 H 1.08998 * 109.47167 * 59.99081 * 1 2 3 33 33 H 1.08994 * 109.47076 * 179.97438 * 1 2 3 34 34 H 1.08004 * 120.52418 * 0.03279 * 4 3 2 35 35 H 1.09004 * 109.75846 * 3.07848 * 9 8 6 36 36 H 1.09003 * 109.75915 * 242.31714 * 9 8 6 37 37 H 1.08998 * 109.25377 * 177.62953 * 10 9 8 38 38 H 1.08996 * 109.25739 * 297.10854 * 10 9 8 39 39 H 1.08998 * 110.78814 * 320.08135 * 13 11 10 40 40 H 1.08997 * 110.93333 * 196.71651 * 13 11 10 41 41 H 1.09009 * 109.89870 * 263.45424 * 14 13 11 42 42 H 1.08998 * 110.05918 * 142.30166 * 14 13 11 43 43 H 0.97005 * 120.00028 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.23106 * 352.85222 * 26 8 6 45 45 H 1.08998 * 109.22722 * 112.21507 * 26 8 6 46 46 H 1.07998 * 120.42782 * 179.71778 * 27 5 4 47 47 H 1.09003 * 109.46740 * 270.30019 * 29 28 27 48 48 H 1.08996 * 109.47255 * 30.29419 * 29 28 27 49 49 H 1.08997 * 109.47249 * 150.30223 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5283 2.6415 0.0000 7 8 6.2050 1.8010 0.5585 8 7 6.1212 3.6812 -0.6198 9 6 7.5751 3.8918 -0.5340 10 6 8.1334 3.9129 -1.9566 11 6 7.4483 5.0019 -2.7865 12 1 7.7379 6.0061 -2.4772 13 6 7.7787 4.6895 -4.2798 14 6 6.7967 3.5434 -4.6104 15 7 5.6804 3.6374 -3.6518 16 6 4.6082 2.7889 -3.5774 17 1 3.7893 3.0107 -2.9092 18 6 4.5738 1.6436 -4.3610 19 7 5.6339 1.2898 -5.0562 20 14 3.0231 0.6043 -4.4285 21 1 2.0996 1.1590 -5.4506 22 1 3.3782 -0.7921 -4.7881 23 1 2.3586 0.6198 -3.1006 24 6 5.9217 4.7991 -2.7931 25 1 5.4707 5.6736 -3.2618 26 6 5.3405 4.6442 -1.4052 27 6 3.2394 3.6636 0.0050 28 6 1.8681 3.5116 -0.0008 29 6 0.9858 4.7333 -0.0007 30 7 1.3178 2.3127 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 4.0230 0.3682 0.0004 35 1 8.0326 3.0785 0.0294 36 1 7.7813 4.8429 -0.0430 37 1 9.2048 4.1101 -1.9194 38 1 7.9624 2.9434 -2.4244 39 1 8.8112 4.3568 -4.3862 40 1 7.5867 5.5572 -4.9109 41 1 7.2987 2.5818 -4.5021 42 1 6.4223 3.6537 -5.6281 43 1 5.6098 0.4896 -5.6041 44 1 4.3117 4.2929 -1.4840 45 1 5.3514 5.6108 -0.9015 46 1 3.6806 4.6493 0.0093 47 1 0.7734 5.0280 1.0270 48 1 1.4943 5.5488 -0.5148 49 1 0.0514 4.5067 -0.5142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042202223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:38 Heat of formation + Delta-G solvation = -12.593996 kcal Electronic energy + Delta-G solvation = -32928.851238 eV Core-core repulsion = 28856.769820 eV Total energy + Delta-G solvation = -4072.081418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20302 -41.13183 -39.72730 -38.93942 -36.51366 -34.99603 -34.11691 -33.28057 -32.44445 -30.65581 -30.18776 -29.25602 -27.65375 -26.74389 -25.97265 -24.72180 -24.05471 -23.21536 -21.75984 -21.27817 -19.97790 -19.19369 -18.55003 -18.45499 -17.40839 -17.11672 -17.08262 -16.88170 -16.53807 -16.27373 -15.99110 -15.60984 -15.31607 -15.19177 -15.02741 -14.67163 -14.40687 -14.14908 -14.05932 -13.74971 -13.38486 -13.35133 -13.19961 -13.09699 -13.03805 -12.91263 -12.72370 -12.70735 -12.55781 -12.36006 -12.10877 -12.03226 -11.72245 -11.51140 -11.35605 -11.23912 -11.05147 -10.92733 -10.70700 -10.56528 -9.58754 -9.45706 -8.78645 -7.82568 -5.15582 -0.31481 0.03184 1.30325 1.35392 1.38993 1.54600 1.90965 2.18031 2.43326 2.68122 3.11163 3.28877 3.35263 3.54590 3.82852 3.90067 3.90553 3.95437 4.09121 4.10836 4.27617 4.34703 4.35568 4.42657 4.45035 4.49758 4.52779 4.61086 4.64342 4.68110 4.74174 4.85912 4.87261 4.88390 4.90121 4.96675 5.03101 5.06721 5.17802 5.21306 5.29192 5.42050 5.47844 5.61306 5.65654 5.71840 5.87373 6.11987 6.24624 6.34860 6.70592 7.02682 7.11413 7.83233 8.48394 9.25033 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.005622 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.566558 B = 4979.550095 C = 6192.508395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.314 3.686 4 C -0.172 4.172 5 C -0.041 4.041 6 C 0.563 3.437 7 O -0.583 6.583 8 N -0.579 5.579 9 C 0.114 3.886 10 C -0.118 4.118 11 C -0.084 4.084 12 H 0.131 0.869 13 C -0.128 4.128 14 C 0.175 3.825 15 N -0.603 5.603 16 C -0.193 4.193 17 H 0.076 0.924 18 C -0.062 4.062 19 N -0.945 5.945 20 Si 0.939 3.061 21 H -0.285 1.285 22 H -0.305 1.305 23 H -0.280 1.280 24 C 0.137 3.863 25 H 0.050 0.950 26 C 0.086 3.914 27 C -0.176 4.176 28 C 0.160 3.840 29 C -0.098 4.098 30 N -0.534 5.534 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.017 0.983 42 H -0.012 1.012 43 H 0.239 0.761 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.183 0.817 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 13.789 11.403 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.235 6.235 3 C 0.136 3.864 4 C -0.194 4.194 5 C -0.052 4.052 6 C 0.352 3.648 7 O -0.465 6.465 8 N -0.308 5.308 9 C -0.007 4.007 10 C -0.156 4.156 11 C -0.103 4.103 12 H 0.149 0.851 13 C -0.166 4.166 14 C 0.049 3.951 15 N -0.328 5.328 16 C -0.323 4.323 17 H 0.094 0.906 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.771 3.229 21 H -0.212 1.212 22 H -0.232 1.232 23 H -0.205 1.205 24 C 0.031 3.969 25 H 0.067 0.933 26 C -0.037 4.037 27 C -0.196 4.196 28 C 0.023 3.977 29 C -0.155 4.155 30 N -0.260 5.260 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.036 0.964 42 H 0.006 0.994 43 H 0.048 0.952 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.200 0.800 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.920 12.823 11.591 17.972 hybrid contribution -0.021 -2.022 -0.933 2.227 sum -4.941 10.801 10.658 15.959 Atomic orbital electron populations 1.23112 0.75350 1.04789 1.02555 1.86223 1.24981 1.24471 1.87845 1.19565 0.88671 0.85387 0.92818 1.20952 0.92685 0.98849 1.06907 1.20021 0.93713 0.93854 0.97602 1.18240 0.87111 0.80848 0.78615 1.90692 1.65880 1.41256 1.48672 1.47815 1.09186 1.26026 1.47812 1.21770 0.78350 1.03106 0.97454 1.21780 1.00542 0.98638 0.94685 1.22498 0.94151 0.99527 0.94170 0.85143 1.22983 0.98644 0.98056 0.96909 1.21072 0.87817 0.95662 0.90510 1.44489 1.23108 1.29845 1.35366 1.18967 0.95375 0.99563 1.18430 0.90618 1.25254 0.98911 0.99399 1.01953 1.70122 1.28306 1.26108 1.35027 0.85641 0.81244 0.78387 0.77643 1.21204 1.23195 1.20549 1.21142 0.95215 0.90291 0.90265 0.93272 1.22369 0.96672 0.93158 0.91453 1.22484 0.93888 0.99531 1.03715 1.21675 0.92328 0.92578 0.91072 1.20901 0.98475 0.91128 1.04992 1.67062 1.40894 0.98716 1.19346 0.91101 0.92985 0.85972 0.86103 0.91458 0.86726 0.88852 0.95762 0.91030 0.90719 0.96444 0.99416 0.95159 0.89154 0.86068 0.80021 0.87749 0.87644 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.38 113.37 1.18 2.11 16 2 O -0.33 -11.91 10.47 -90.04 -0.94 -12.85 16 3 C 0.31 12.01 7.49 84.80 0.63 12.65 16 4 C -0.17 -7.18 9.64 22.75 0.22 -6.96 16 5 C -0.04 -1.56 5.41 -19.90 -0.11 -1.67 16 6 C 0.56 22.61 7.48 86.88 0.65 23.26 16 7 O -0.58 -27.44 16.31 -3.74 -0.06 -27.50 16 8 N -0.58 -19.04 2.97 -826.16 -2.45 -21.49 16 9 C 0.11 3.22 6.44 86.20 0.56 3.77 16 10 C -0.12 -3.53 5.04 30.57 0.15 -3.38 16 11 C -0.08 -2.27 3.68 -9.34 -0.03 -2.31 16 12 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 13 C -0.13 -4.15 6.33 32.18 0.20 -3.94 16 14 C 0.17 8.27 4.73 86.71 0.41 8.68 16 15 N -0.60 -28.10 3.20 -674.08 -2.15 -30.25 16 16 C -0.19 -10.32 9.62 84.03 0.81 -9.51 16 17 H 0.08 3.92 6.64 -2.91 -0.02 3.90 16 18 C -0.06 -3.63 5.45 84.86 0.46 -3.17 16 19 N -0.95 -58.70 10.54 21.65 0.23 -58.47 16 20 Si 0.94 49.05 29.56 68.60 2.03 51.08 16 21 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.30 -16.45 7.11 99.48 0.71 -15.74 16 23 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 24 C 0.14 4.51 2.97 44.77 0.13 4.64 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 C 0.09 2.39 4.06 85.76 0.35 2.74 16 27 C -0.18 -5.00 7.14 22.63 0.16 -4.84 16 28 C 0.16 4.37 6.77 42.48 0.29 4.66 16 29 C -0.10 -1.60 10.16 71.24 0.72 -0.87 16 30 N -0.53 -17.65 9.09 -297.17 -2.70 -20.35 16 31 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.12 5.46 8.02 -2.91 -0.02 5.44 16 35 H 0.07 2.19 7.06 -2.38 -0.02 2.17 16 36 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.02 1.01 6.85 -2.39 -0.02 0.99 16 39 H 0.07 2.16 7.97 -2.39 -0.02 2.14 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.02 0.98 6.48 -2.38 -0.02 0.97 16 42 H -0.01 -0.67 8.06 -2.39 -0.02 -0.69 16 43 H 0.24 14.82 8.31 -92.70 -0.77 14.05 16 44 H 0.09 2.81 2.89 -2.39 -0.01 2.80 16 45 H 0.12 2.07 8.02 -2.39 -0.02 2.05 16 46 H 0.18 3.71 5.81 -2.91 -0.02 3.69 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 49 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -82.14 381.78 1.69 -80.45 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.96 Total: 13.51 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 6.79 Total: 25.86 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -7.08 Total: -130.56 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.00 Total: -40.35 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -82.14 1.69 -80.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042202223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.857 kcal (2) G-P(sol) polarization free energy of solvation -82.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds