Wall clock time and date at job start Wed Apr 1 2020 04:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35433 * 116.99763 * 2 1 4 4 N 1.32226 * 119.80116 * 359.97438 * 3 2 1 5 5 C 1.31880 * 121.80295 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.40997 * 179.97438 * 5 4 3 7 7 C 1.38357 * 121.18304 * 359.97438 * 5 4 3 8 8 C 1.38335 * 119.45942 * 359.78678 * 7 5 4 9 9 C 1.39992 * 118.34564 * 0.47485 * 8 7 5 10 10 C 1.47529 * 120.59443 * 179.75560 * 9 8 7 11 11 O 1.21588 * 119.99904 * 233.63513 * 10 9 8 12 12 N 1.34779 * 120.00086 * 53.63648 * 10 9 8 13 13 C 1.46592 * 119.74912 * 355.71670 * 12 10 9 14 14 C 1.53886 * 110.70866 * 132.28700 * 13 12 10 15 15 C 1.52516 * 106.65535 * 52.17708 * 14 13 12 16 16 H 1.09003 * 111.79366 * 55.73349 * 15 14 13 17 17 C 1.53692 * 114.39079 * 183.94272 * 15 14 13 18 18 C 1.55361 * 101.91017 * 152.67687 * 17 15 14 19 19 N 1.48152 * 107.01198 * 337.93378 * 18 17 15 20 20 C 1.36943 * 126.39731 * 174.86040 * 19 18 17 21 21 H 1.07993 * 119.99647 * 179.68825 * 20 19 18 22 22 C 1.38805 * 119.99537 * 359.68692 * 20 19 18 23 23 N 1.31622 * 120.00453 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99836 * 180.27669 * 22 20 19 25 25 H 1.48498 * 109.47143 * 179.72481 * 24 22 20 26 26 H 1.48502 * 109.47236 * 299.72572 * 24 22 20 27 27 H 1.48506 * 109.46953 * 59.72199 * 24 22 20 28 28 C 1.45506 * 107.20519 * 354.59411 * 19 18 17 29 29 H 1.08994 * 109.57295 * 273.62927 * 28 19 18 30 30 C 1.47791 * 119.74899 * 175.73964 * 12 10 9 31 31 H 1.08996 * 109.46756 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47056 * 299.99419 * 1 2 3 33 33 H 1.09001 * 109.47299 * 59.99519 * 1 2 3 34 34 H 1.08994 * 109.47095 * 89.99841 * 6 5 4 35 35 H 1.08997 * 109.46908 * 209.99751 * 6 5 4 36 36 H 1.08996 * 109.47118 * 329.99798 * 6 5 4 37 37 H 1.08000 * 120.26850 * 180.02562 * 7 5 4 38 38 H 1.07994 * 120.83021 * 180.23672 * 8 7 5 39 39 H 1.08996 * 109.22807 * 252.60251 * 13 12 10 40 40 H 1.09006 * 109.22943 * 12.01049 * 13 12 10 41 41 H 1.09007 * 109.88993 * 171.25268 * 14 13 12 42 42 H 1.09007 * 109.89405 * 292.35532 * 14 13 12 43 43 H 1.08996 * 110.95884 * 271.02425 * 17 15 14 44 44 H 1.08993 * 110.96224 * 34.73306 * 17 15 14 45 45 H 1.08998 * 110.04650 * 218.53242 * 18 17 15 46 46 H 1.08993 * 109.81740 * 97.21104 * 18 17 15 47 47 H 0.96997 * 119.99837 * 179.97438 * 23 22 20 48 48 H 1.08996 * 110.06460 * 112.01495 * 30 12 10 49 49 H 1.09003 * 110.06889 * 350.45077 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8770 3.5084 0.0000 6 6 0.9999 4.7339 -0.0012 7 6 3.2525 3.6575 0.0016 8 6 4.0587 2.5334 0.0072 9 6 3.4449 1.2752 0.0008 10 6 4.2570 0.0436 0.0009 11 8 4.0742 -0.8052 -0.8502 12 7 5.2015 -0.1408 0.9446 13 6 5.4822 0.9253 1.9108 14 6 5.5271 0.3638 3.3429 15 6 6.4981 -0.8121 3.3211 16 1 7.4779 -0.5209 2.9426 17 6 6.6061 -1.5708 4.6534 18 6 7.0123 -2.9937 4.1800 19 7 6.5901 -3.1169 2.7653 20 6 6.8422 -4.1733 1.9311 21 1 6.4792 -4.1567 0.9141 22 6 7.5642 -5.2651 2.3928 23 7 8.0070 -5.2850 3.6321 24 14 7.9147 -6.7028 1.2527 25 1 8.7025 -7.7304 1.9796 26 1 6.6324 -7.2949 0.7941 27 1 8.6877 -6.2258 0.0778 28 6 5.8522 -1.9086 2.4296 29 1 4.8048 -2.0321 2.7048 30 6 5.9467 -1.4160 0.9970 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.7872 5.0294 1.0261 35 1 1.5127 5.5472 -0.5145 36 1 0.0654 4.5112 -0.5162 37 1 3.6932 4.6435 0.0024 38 1 5.1348 2.6241 0.0123 39 1 6.4436 1.3808 1.6736 40 1 4.7007 1.6825 1.8471 41 1 5.8870 1.1294 4.0303 42 1 4.5328 0.0326 3.6428 43 1 7.3761 -1.1341 5.2894 44 1 5.6454 -1.5944 5.1676 45 1 6.5078 -3.7469 4.7851 46 1 8.0928 -3.1143 4.2570 47 1 8.5112 -6.0482 3.9548 48 1 6.9896 -1.2511 0.7263 49 1 5.4941 -2.1418 0.3213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042261611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:59 Heat of formation + Delta-G solvation = 4.524641 kcal Electronic energy + Delta-G solvation = -31409.553545 eV Core-core repulsion = 27338.214447 eV Total energy + Delta-G solvation = -4071.339098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.23092 -39.78864 -38.23762 -38.04582 -35.36627 -33.47194 -32.79518 -32.03579 -31.19606 -29.56882 -28.63362 -28.40097 -26.98313 -24.72019 -24.10739 -23.28444 -22.66644 -22.12896 -20.28554 -19.89250 -19.25481 -18.32621 -17.29696 -17.06838 -16.52132 -16.22364 -15.74514 -15.07208 -14.91870 -14.66820 -14.42755 -14.39970 -14.27426 -14.01005 -13.83417 -13.53675 -13.21180 -12.96024 -12.81108 -12.77992 -12.50953 -12.42903 -12.22631 -11.89828 -11.86400 -11.51694 -11.33884 -11.20291 -10.92254 -10.79565 -10.71782 -10.25303 -10.14813 -10.09111 -9.96068 -9.77620 -9.64359 -9.52216 -9.41885 -8.65206 -8.59365 -8.37233 -6.82584 -5.68557 -3.02305 0.58932 0.99130 2.73842 2.90855 3.10208 3.45468 3.48655 3.49227 3.51318 3.84355 4.37165 4.48307 4.54174 4.71858 4.86365 4.93537 5.00087 5.03773 5.12143 5.16938 5.18058 5.19434 5.20252 5.42159 5.47632 5.49727 5.58008 5.63549 5.64247 5.69569 5.73786 5.79219 5.94545 6.04308 6.07748 6.11080 6.16541 6.19900 6.41329 6.51682 6.58544 6.73511 6.78233 7.03082 7.09169 7.50383 7.57922 7.60456 7.65094 7.84148 8.26197 8.35374 9.22526 9.85371 10.52037 11.43706 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003023 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.292942 B = 9259.363881 C =10080.293423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.287 6.287 3 C 0.369 3.631 4 N -0.542 5.542 5 C 0.183 3.817 6 C -0.107 4.107 7 C -0.217 4.217 8 C -0.009 4.009 9 C -0.200 4.200 10 C 0.567 3.433 11 O -0.523 6.523 12 N -0.599 5.599 13 C 0.103 3.897 14 C -0.119 4.119 15 C -0.112 4.112 16 H 0.079 0.921 17 C -0.138 4.138 18 C 0.178 3.822 19 N -0.592 5.592 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.923 5.923 24 Si 0.910 3.090 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.156 3.844 29 H 0.025 0.975 30 C 0.118 3.882 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.056 0.944 47 H 0.252 0.748 48 H 0.072 0.928 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 22.980 -2.877 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.191 6.191 3 C 0.189 3.811 4 N -0.267 5.267 5 C 0.045 3.955 6 C -0.164 4.164 7 C -0.238 4.238 8 C -0.035 4.035 9 C -0.206 4.206 10 C 0.353 3.647 11 O -0.399 6.399 12 N -0.333 5.333 13 C -0.021 4.021 14 C -0.158 4.158 15 C -0.132 4.132 16 H 0.098 0.902 17 C -0.177 4.177 18 C 0.053 3.947 19 N -0.317 5.317 20 C -0.356 4.356 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.570 5.570 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.211 1.211 27 H -0.211 1.211 28 C 0.047 3.953 29 H 0.042 0.958 30 C -0.003 4.003 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.090 0.910 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.885 21.880 -3.321 25.120 hybrid contribution 0.868 -0.640 -0.435 1.163 sum -11.017 21.241 -3.756 24.221 Atomic orbital electron populations 1.22930 0.76988 1.03419 1.02248 1.86396 1.22975 1.23553 1.86208 1.19660 0.87851 0.84866 0.88689 1.67215 1.40277 0.98183 1.21068 1.21118 0.92154 0.91890 0.90319 1.20794 0.99343 0.92762 1.03484 1.21701 0.93805 0.99807 1.08442 1.21610 1.00878 0.90014 0.90967 1.19910 0.91721 0.95517 1.13462 1.17816 0.79472 0.85564 0.81819 1.90806 1.67748 1.44260 1.37085 1.48183 1.37544 1.17224 1.30343 1.21920 1.01101 0.89552 0.89480 1.21917 1.00370 0.98481 0.95021 1.22396 0.98280 0.94507 0.98034 0.90236 1.22739 1.00302 0.98859 0.95772 1.21555 0.99372 0.89794 0.83940 1.44164 1.62993 1.15198 1.09339 1.19010 1.28896 0.94236 0.93433 0.90302 1.24773 1.00435 0.98461 0.96581 1.69934 1.41658 1.30762 1.14657 0.86222 0.77957 0.82101 0.79669 1.21655 1.21117 1.21085 1.21003 0.95013 0.87434 0.91867 0.95765 1.21757 0.95646 0.83280 0.99662 0.88287 0.92208 0.92196 0.89862 0.90175 0.90286 0.83925 0.83475 0.91539 0.90318 0.90886 0.91403 0.92239 0.92624 0.94507 0.92570 0.93741 0.91013 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.29 -4.47 9.69 -20.93 -0.20 -4.67 16 3 C 0.37 5.35 7.50 -16.62 -0.12 5.23 16 4 N -0.54 -6.61 9.11 -9.21 -0.08 -6.70 16 5 C 0.18 1.70 6.78 -82.53 -0.56 1.14 16 6 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 7 C -0.22 -1.78 9.71 -39.50 -0.38 -2.16 16 8 C -0.01 -0.09 7.58 -38.89 -0.29 -0.39 16 9 C -0.20 -2.83 4.83 -104.69 -0.51 -3.34 16 10 C 0.57 9.94 6.86 -12.47 -0.09 9.85 16 11 O -0.52 -11.29 16.16 2.34 0.04 -11.26 16 12 N -0.60 -9.80 3.01 -173.97 -0.52 -10.32 16 13 C 0.10 1.26 5.27 -3.53 -0.02 1.25 16 14 C -0.12 -1.58 5.73 -26.52 -0.15 -1.73 16 15 C -0.11 -1.92 2.64 -89.25 -0.24 -2.15 16 16 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 17 C -0.14 -2.53 6.52 -25.12 -0.16 -2.70 16 18 C 0.18 4.29 5.46 -1.88 -0.01 4.28 16 19 N -0.59 -15.11 3.34 -162.87 -0.54 -15.65 16 20 C -0.23 -6.39 9.88 -15.06 -0.15 -6.54 16 21 H 0.08 2.18 7.43 -52.49 -0.39 1.79 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -27.23 10.44 55.49 0.58 -26.65 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.16 3.27 2.78 -67.82 -0.19 3.09 16 29 H 0.03 0.56 7.90 -51.93 -0.41 0.15 16 30 C 0.12 2.33 5.66 -3.95 -0.02 2.30 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.15 1.18 7.37 -52.49 -0.39 0.79 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.84 4.83 -51.93 -0.25 0.58 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.96 7.97 -51.92 -0.41 0.54 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 45 H 0.04 0.98 7.79 -51.93 -0.40 0.58 16 46 H 0.06 1.49 7.19 -51.93 -0.37 1.12 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.09 2.06 6.79 -51.93 -0.35 1.70 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -34.84 386.96 -9.11 -43.95 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.60 Total: -1.23 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.57 Total: 9.11 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.57 Total: -59.32 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.16 Total: -15.93 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.84 -9.11 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042261611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.475 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds