Wall clock time and date at job start Wed Apr 1 2020 04:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35691 * 116.99357 * 2 1 4 4 C 1.38894 * 119.61791 * 179.97438 * 3 2 1 5 5 C 1.39576 * 118.94175 * 179.72343 * 4 3 2 6 6 C 1.48167 * 120.88768 * 180.29164 * 5 4 3 7 7 O 1.21521 * 119.99991 * 221.27453 * 6 5 4 8 8 N 1.34771 * 120.00180 * 41.27870 * 6 5 4 9 9 C 1.46800 * 119.57723 * 5.56803 * 8 6 5 10 10 C 1.53912 * 107.35803 * 127.89740 * 9 8 6 11 11 C 1.52741 * 108.35315 * 58.31613 * 10 9 8 12 12 C 1.53012 * 110.79761 * 296.10491 * 11 10 9 13 13 H 1.09006 * 111.38392 * 291.24061 * 12 11 10 14 14 C 1.45124 * 119.57718 * 185.84459 * 8 6 5 15 15 H 1.08996 * 109.96959 * 348.05265 * 14 8 6 16 16 C 1.54419 * 111.61151 * 111.34374 * 14 8 6 17 17 C 1.54564 * 102.44981 * 156.57139 * 16 14 8 18 18 N 1.47113 * 107.25523 * 338.33664 * 17 16 14 19 19 C 1.36936 * 125.76627 * 177.42224 * 18 17 16 20 20 H 1.08007 * 120.00318 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00370 * 359.97003 * 19 18 17 22 22 N 1.31623 * 119.99645 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00374 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47084 * 60.00047 * 23 21 19 25 25 H 1.48506 * 109.47283 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47175 * 299.99832 * 23 21 19 27 27 C 1.39962 * 118.22158 * 0.53875 * 5 4 3 28 28 C 1.37984 * 119.13062 * 359.48499 * 27 5 4 29 29 C 1.50695 * 119.51216 * 180.27948 * 28 27 5 30 30 N 1.31908 * 120.97556 * 0.24714 * 28 27 5 31 31 H 1.09002 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47004 * 300.00104 * 1 2 3 33 33 H 1.08997 * 109.46861 * 60.00114 * 1 2 3 34 34 H 1.08001 * 120.52994 * 0.02562 * 4 3 2 35 35 H 1.08994 * 109.83353 * 247.48028 * 9 8 6 36 36 H 1.09006 * 109.83243 * 8.43196 * 9 8 6 37 37 H 1.08999 * 109.79193 * 298.59784 * 10 9 8 38 38 H 1.09001 * 109.76249 * 178.01482 * 10 9 8 39 39 H 1.08991 * 109.21248 * 175.76418 * 11 10 9 40 40 H 1.09000 * 109.21096 * 56.44355 * 11 10 9 41 41 H 1.09000 * 110.80763 * 274.81730 * 16 14 8 42 42 H 1.09008 * 110.80704 * 38.33175 * 16 14 8 43 43 H 1.08996 * 109.88787 * 218.91608 * 17 16 14 44 44 H 1.09001 * 109.88035 * 97.74616 * 17 16 14 45 45 H 0.97001 * 120.00070 * 179.97438 * 22 21 19 46 46 H 1.07994 * 120.43619 * 179.75495 * 27 5 4 47 47 H 1.08993 * 109.47523 * 89.99750 * 29 28 27 48 48 H 1.09006 * 109.47122 * 210.00004 * 29 28 27 49 49 H 1.09003 * 109.47114 * 329.99215 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 3.4324 1.2727 0.0005 5 6 4.0512 2.5238 -0.0054 6 6 5.5281 2.6418 -0.0115 7 8 6.0735 3.4805 0.6783 8 7 6.2667 1.8190 -0.7821 9 6 5.5964 0.8931 -1.7032 10 6 6.2190 1.0994 -3.0956 11 6 7.7204 0.8370 -2.9947 12 6 8.3897 1.8585 -2.0728 13 1 8.3873 2.8547 -2.5153 14 6 7.7144 1.8555 -0.6864 15 1 8.0278 2.7306 -0.1173 16 6 8.2753 0.5631 -0.0545 17 6 9.7252 0.5328 -0.5892 18 7 9.7612 1.3672 -1.8004 19 6 10.8737 1.6428 -2.5497 20 1 10.7932 2.2693 -3.4257 21 6 12.1051 1.1171 -2.1833 22 7 12.2034 0.3540 -1.1154 23 14 13.6228 1.4936 -3.2050 24 1 13.8519 2.9606 -3.2290 25 1 14.8025 0.8186 -2.6066 26 1 13.4208 1.0014 -4.5915 27 6 3.2393 3.6638 0.0000 28 6 1.8678 3.5117 0.0000 29 6 0.9855 4.7333 -0.0006 30 7 1.3177 2.3128 -0.0001 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0230 0.3685 0.0005 35 1 5.7524 -0.1340 -1.3736 36 1 4.5294 1.1133 -1.7375 37 1 6.0476 2.1230 -3.4285 38 1 5.7724 0.4035 -3.8058 39 1 8.1639 0.9055 -3.9880 40 1 7.8835 -0.1651 -2.5982 41 1 8.2650 0.6279 1.0335 42 1 7.7180 -0.3089 -0.3969 43 1 10.0084 -0.4905 -0.8354 44 1 10.4052 0.9378 0.1602 45 1 13.0637 -0.0137 -0.8595 46 1 3.6803 4.6496 -0.0003 47 1 0.7728 5.0274 -1.0284 48 1 0.0512 4.5070 0.5133 49 1 1.4941 5.5492 0.5130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049680232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:50 Heat of formation + Delta-G solvation = 4.554336 kcal Electronic energy + Delta-G solvation = -31194.645449 eV Core-core repulsion = 27123.307638 eV Total energy + Delta-G solvation = -4071.337811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30874 -40.15616 -38.45719 -37.75682 -35.43174 -33.51290 -32.43755 -32.16813 -31.92384 -29.06313 -28.66677 -28.29586 -26.89603 -25.48690 -24.32134 -23.56718 -22.91907 -22.02008 -20.44784 -19.98814 -18.66585 -18.06923 -17.20175 -16.92675 -16.75261 -16.32937 -16.20550 -15.61830 -15.01527 -14.76852 -14.55645 -14.34164 -14.22929 -14.08086 -13.71896 -13.64183 -13.39848 -13.00331 -12.78234 -12.66572 -12.55900 -12.35588 -12.10412 -12.00488 -11.95566 -11.42016 -11.33586 -11.04950 -11.00041 -10.80144 -10.65800 -10.59816 -10.36818 -10.12693 -10.08575 -9.98859 -9.66465 -9.64763 -9.54237 -8.69893 -8.63225 -8.36293 -6.87714 -5.71871 -3.06206 0.55805 0.85344 2.59845 2.77153 3.01369 3.40638 3.45068 3.46068 3.47192 3.82031 4.22605 4.47945 4.61997 4.71642 4.82113 4.93530 4.97048 5.01038 5.10711 5.12990 5.18802 5.25783 5.28070 5.32541 5.34328 5.46815 5.52476 5.57977 5.61361 5.63767 5.68799 5.82835 5.84088 5.96423 6.04207 6.08528 6.17277 6.28863 6.33151 6.47407 6.55775 6.69293 6.89813 6.91634 7.03434 7.45573 7.51706 7.53973 7.59765 7.80937 8.13403 8.23179 9.19526 9.79132 10.44796 11.39319 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.002591 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.106311 B =10802.320891 C =11181.443447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.322 3.678 4 C -0.168 4.168 5 C -0.036 4.036 6 C 0.554 3.446 7 O -0.527 6.527 8 N -0.580 5.580 9 C 0.096 3.904 10 C -0.132 4.132 11 C -0.130 4.130 12 C 0.157 3.843 13 H 0.060 0.940 14 C 0.128 3.872 15 H 0.104 0.896 16 C -0.152 4.152 17 C 0.181 3.819 18 N -0.597 5.597 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C -0.161 4.161 28 C 0.165 3.835 29 C -0.104 4.104 30 N -0.531 5.531 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.146 0.854 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.070 1.582 0.790 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C 0.144 3.856 4 C -0.189 4.189 5 C -0.046 4.046 6 C 0.341 3.659 7 O -0.403 6.403 8 N -0.311 5.311 9 C -0.027 4.027 10 C -0.171 4.171 11 C -0.170 4.170 12 C 0.048 3.952 13 H 0.078 0.922 14 C 0.025 3.975 15 H 0.122 0.878 16 C -0.191 4.191 17 C 0.056 3.944 18 N -0.322 5.322 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.181 4.181 28 C 0.029 3.971 29 C -0.161 4.161 30 N -0.256 5.256 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.164 0.836 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.251 1.598 1.168 25.328 hybrid contribution 1.482 0.065 -0.559 1.585 sum -23.769 1.663 0.609 23.835 Atomic orbital electron populations 1.22867 0.77083 1.03030 1.02455 1.86268 1.23004 1.24104 1.87817 1.19576 0.88871 0.84677 0.92523 1.21289 0.92284 0.98754 1.06581 1.20175 0.94234 0.93183 0.97043 1.18195 0.85723 0.81425 0.80600 1.90804 1.72424 1.34886 1.42213 1.47553 1.07091 1.37339 1.39112 1.22305 0.96968 0.93625 0.89761 1.22008 0.97800 1.01940 0.95371 1.22134 0.92426 1.01197 1.01293 1.21329 0.86296 0.95850 0.91679 0.92184 1.21894 0.76458 1.00208 0.98976 0.87770 1.23140 0.99975 0.96287 0.99719 1.21177 0.88950 0.95702 0.88551 1.44680 1.01823 1.56719 1.28933 1.18983 0.84967 1.25995 1.05617 0.90479 1.24796 0.97585 0.99867 0.98050 1.69942 1.23837 1.37198 1.25883 0.86197 0.82509 0.77756 0.79268 1.21163 1.21627 1.21210 1.21866 0.93324 0.99487 1.03465 1.20859 0.91567 0.91868 0.92793 1.20759 0.99079 0.92805 1.03476 1.66973 1.41171 0.98441 1.19018 0.88533 0.92294 0.92243 0.83135 0.90788 0.89484 0.91801 0.91193 0.92030 0.91758 0.91930 0.92127 0.93954 0.92957 0.93661 0.83584 0.89959 0.90297 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.19 10.48 -18.78 -0.20 -3.39 16 3 C 0.32 3.69 7.49 -17.16 -0.13 3.56 16 4 C -0.17 -1.95 7.42 -38.84 -0.29 -2.24 16 5 C -0.04 -0.46 5.06 -104.67 -0.53 -0.99 16 6 C 0.55 8.75 7.32 -12.18 -0.09 8.66 16 7 O -0.53 -10.12 16.29 5.35 0.09 -10.03 16 8 N -0.58 -8.90 2.73 -165.72 -0.45 -9.36 16 9 C 0.10 1.19 4.66 -3.40 -0.02 1.17 16 10 C -0.13 -1.73 6.12 -26.39 -0.16 -1.89 16 11 C -0.13 -2.24 5.10 -26.86 -0.14 -2.37 16 12 C 0.16 3.15 3.60 -66.35 -0.24 2.91 16 13 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.38 3.12 -67.29 -0.21 2.17 16 15 H 0.10 2.18 6.93 -51.93 -0.36 1.82 16 16 C -0.15 -2.88 6.08 -25.17 -0.15 -3.03 16 17 C 0.18 4.33 5.19 -2.89 -0.01 4.31 16 18 N -0.60 -14.75 2.91 -162.20 -0.47 -15.23 16 19 C -0.23 -6.20 10.29 -15.06 -0.16 -6.35 16 20 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.78 10.33 55.49 0.57 -26.21 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.16 -1.82 9.40 -39.03 -0.37 -2.19 16 28 C 0.17 1.67 6.77 -82.66 -0.56 1.11 16 29 C -0.10 -0.69 10.16 36.00 0.37 -0.32 16 30 N -0.53 -5.87 9.09 -9.59 -0.09 -5.96 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.15 1.61 6.71 -52.49 -0.35 1.26 16 35 H 0.07 0.87 7.46 -51.93 -0.39 0.48 16 36 H 0.09 0.94 4.79 -51.93 -0.25 0.70 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.17 7.12 -51.93 -0.37 0.80 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.05 6.78 -51.92 -0.35 0.70 16 43 H 0.04 1.11 7.60 -51.93 -0.39 0.71 16 44 H 0.05 1.40 7.30 -51.93 -0.38 1.02 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.43 8.07 -51.93 -0.42 0.02 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -32.09 384.64 -8.96 -41.05 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.46 Total: 0.76 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.73 Total: 5.59 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.44 Total: -56.75 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.11 Total: -13.42 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.09 -8.96 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049680232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.607 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds