Wall clock time and date at job start Wed Apr 1 2020 04:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35691 * 116.99357 * 2 1 4 4 C 1.38894 * 119.61791 * 179.97438 * 3 2 1 5 5 C 1.39576 * 118.94175 * 179.72343 * 4 3 2 6 6 C 1.48167 * 120.88768 * 180.29164 * 5 4 3 7 7 O 1.21521 * 119.99991 * 221.27453 * 6 5 4 8 8 N 1.34771 * 120.00180 * 41.27870 * 6 5 4 9 9 C 1.46800 * 119.57723 * 5.56803 * 8 6 5 10 10 C 1.53912 * 107.35803 * 127.89740 * 9 8 6 11 11 C 1.52741 * 108.35315 * 58.31613 * 10 9 8 12 12 C 1.53012 * 110.79761 * 296.10491 * 11 10 9 13 13 H 1.09006 * 111.38392 * 291.24061 * 12 11 10 14 14 C 1.45124 * 119.57718 * 185.84459 * 8 6 5 15 15 H 1.08996 * 109.96959 * 348.05265 * 14 8 6 16 16 C 1.54419 * 111.61151 * 111.34374 * 14 8 6 17 17 C 1.54564 * 102.44981 * 156.57139 * 16 14 8 18 18 N 1.47113 * 107.25523 * 338.33664 * 17 16 14 19 19 C 1.36936 * 125.76627 * 177.42224 * 18 17 16 20 20 H 1.08007 * 120.00318 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00370 * 359.97003 * 19 18 17 22 22 N 1.31623 * 119.99645 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00374 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47084 * 60.00047 * 23 21 19 25 25 H 1.48506 * 109.47283 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47175 * 299.99832 * 23 21 19 27 27 C 1.39962 * 118.22158 * 0.53875 * 5 4 3 28 28 C 1.37984 * 119.13062 * 359.48499 * 27 5 4 29 29 C 1.50695 * 119.51216 * 180.27948 * 28 27 5 30 30 N 1.31908 * 120.97556 * 0.24714 * 28 27 5 31 31 H 1.09002 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47004 * 300.00104 * 1 2 3 33 33 H 1.08997 * 109.46861 * 60.00114 * 1 2 3 34 34 H 1.08001 * 120.52994 * 0.02562 * 4 3 2 35 35 H 1.08994 * 109.83353 * 247.48028 * 9 8 6 36 36 H 1.09006 * 109.83243 * 8.43196 * 9 8 6 37 37 H 1.08999 * 109.79193 * 298.59784 * 10 9 8 38 38 H 1.09001 * 109.76249 * 178.01482 * 10 9 8 39 39 H 1.08991 * 109.21248 * 175.76418 * 11 10 9 40 40 H 1.09000 * 109.21096 * 56.44355 * 11 10 9 41 41 H 1.09000 * 110.80763 * 274.81730 * 16 14 8 42 42 H 1.09008 * 110.80704 * 38.33175 * 16 14 8 43 43 H 1.08996 * 109.88787 * 218.91608 * 17 16 14 44 44 H 1.09001 * 109.88035 * 97.74616 * 17 16 14 45 45 H 0.97001 * 120.00070 * 179.97438 * 22 21 19 46 46 H 1.07994 * 120.43619 * 179.75495 * 27 5 4 47 47 H 1.08993 * 109.47523 * 89.99750 * 29 28 27 48 48 H 1.09006 * 109.47122 * 210.00004 * 29 28 27 49 49 H 1.09003 * 109.47114 * 329.99215 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 3.4324 1.2727 0.0005 5 6 4.0512 2.5238 -0.0054 6 6 5.5281 2.6418 -0.0115 7 8 6.0735 3.4805 0.6783 8 7 6.2667 1.8190 -0.7821 9 6 5.5964 0.8931 -1.7032 10 6 6.2190 1.0994 -3.0956 11 6 7.7204 0.8370 -2.9947 12 6 8.3897 1.8585 -2.0728 13 1 8.3873 2.8547 -2.5153 14 6 7.7144 1.8555 -0.6864 15 1 8.0278 2.7306 -0.1173 16 6 8.2753 0.5631 -0.0545 17 6 9.7252 0.5328 -0.5892 18 7 9.7612 1.3672 -1.8004 19 6 10.8737 1.6428 -2.5497 20 1 10.7932 2.2693 -3.4257 21 6 12.1051 1.1171 -2.1833 22 7 12.2034 0.3540 -1.1154 23 14 13.6228 1.4936 -3.2050 24 1 13.8519 2.9606 -3.2290 25 1 14.8025 0.8186 -2.6066 26 1 13.4208 1.0014 -4.5915 27 6 3.2393 3.6638 0.0000 28 6 1.8678 3.5117 0.0000 29 6 0.9855 4.7333 -0.0006 30 7 1.3177 2.3128 -0.0001 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0230 0.3685 0.0005 35 1 5.7524 -0.1340 -1.3736 36 1 4.5294 1.1133 -1.7375 37 1 6.0476 2.1230 -3.4285 38 1 5.7724 0.4035 -3.8058 39 1 8.1639 0.9055 -3.9880 40 1 7.8835 -0.1651 -2.5982 41 1 8.2650 0.6279 1.0335 42 1 7.7180 -0.3089 -0.3969 43 1 10.0084 -0.4905 -0.8354 44 1 10.4052 0.9378 0.1602 45 1 13.0637 -0.0137 -0.8595 46 1 3.6803 4.6496 -0.0003 47 1 0.7728 5.0274 -1.0284 48 1 0.0512 4.5070 0.5133 49 1 1.4941 5.5492 0.5130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049680232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:49 Heat of formation + Delta-G solvation = -16.263861 kcal Electronic energy + Delta-G solvation = -31195.548194 eV Core-core repulsion = 27123.307638 eV Total energy + Delta-G solvation = -4072.240555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.32295 -41.31481 -39.65435 -38.80878 -36.92502 -34.70776 -33.87452 -33.64535 -32.82062 -30.86905 -29.84974 -29.30227 -27.60336 -26.87739 -26.06134 -24.72906 -23.76796 -23.31578 -22.01044 -21.47587 -19.82731 -19.21002 -18.80880 -18.18154 -17.78297 -17.17929 -17.03931 -16.87579 -16.74243 -16.23883 -15.94489 -15.44657 -15.23635 -15.07194 -14.94678 -14.92382 -14.56914 -14.26820 -14.11226 -13.80660 -13.57422 -13.36828 -13.29515 -13.11046 -13.03660 -12.81867 -12.65351 -12.61922 -12.38079 -12.30038 -12.13886 -12.04647 -11.94546 -11.72597 -11.56358 -11.39898 -11.22760 -10.92563 -10.71047 -10.63208 -9.73376 -9.49309 -8.90510 -7.84169 -5.20088 -0.36721 0.02379 1.45196 1.48275 1.49145 1.54679 1.70064 2.06508 2.49620 2.59461 3.05569 3.22561 3.34029 3.52423 3.78672 3.82724 3.86850 3.89421 4.00182 4.02116 4.06673 4.09882 4.33454 4.40945 4.45906 4.48782 4.51504 4.53587 4.55526 4.63245 4.73533 4.80052 4.81039 4.81303 4.88390 4.94226 4.98950 5.02600 5.04674 5.16265 5.31306 5.36494 5.38754 5.50248 5.56707 5.63460 5.73377 6.15717 6.17518 6.22761 6.70830 6.88936 7.08877 7.74746 8.40030 9.25684 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.002591 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.106311 B =10802.320891 C =11181.443447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.319 3.681 4 C -0.169 4.169 5 C -0.045 4.045 6 C 0.556 3.444 7 O -0.569 6.569 8 N -0.577 5.577 9 C 0.095 3.905 10 C -0.122 4.122 11 C -0.119 4.119 12 C 0.152 3.848 13 H 0.051 0.949 14 C 0.144 3.856 15 H 0.075 0.925 16 C -0.134 4.134 17 C 0.192 3.808 18 N -0.617 5.617 19 C -0.237 4.237 20 H 0.081 0.919 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.280 1.280 25 H -0.296 1.296 26 H -0.275 1.275 27 C -0.167 4.167 28 C 0.170 3.830 29 C -0.102 4.102 30 N -0.534 5.534 31 H 0.122 0.878 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.160 0.840 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.247 0.753 46 H 0.150 0.850 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.351 1.409 -0.387 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.140 3.860 4 C -0.190 4.190 5 C -0.056 4.056 6 C 0.344 3.656 7 O -0.448 6.448 8 N -0.307 5.307 9 C -0.026 4.026 10 C -0.161 4.161 11 C -0.159 4.159 12 C 0.045 3.955 13 H 0.069 0.931 14 C 0.039 3.961 15 H 0.093 0.907 16 C -0.173 4.173 17 C 0.067 3.933 18 N -0.342 5.342 19 C -0.365 4.365 20 H 0.099 0.901 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.201 1.201 27 C -0.188 4.188 28 C 0.033 3.967 29 C -0.159 4.159 30 N -0.259 5.259 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.178 0.822 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.056 0.944 46 H 0.168 0.832 47 H 0.116 0.884 48 H 0.104 0.896 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.600 1.418 -0.043 28.636 hybrid contribution 2.389 0.163 -0.186 2.402 sum -26.211 1.581 -0.229 26.260 Atomic orbital electron populations 1.23107 0.75432 1.04809 1.02509 1.86261 1.24647 1.23585 1.87537 1.19688 0.88927 0.85184 0.92210 1.21291 0.92640 0.98423 1.06667 1.19892 0.92104 0.94466 0.99121 1.18634 0.86989 0.80398 0.79550 1.90782 1.73535 1.36642 1.43871 1.47521 1.05534 1.37956 1.39711 1.22578 0.97890 0.93645 0.88504 1.21965 0.94411 1.03061 0.96619 1.21912 0.95306 0.99259 0.99415 1.21521 0.84619 0.96166 0.93197 0.93135 1.21383 0.78728 0.98669 0.97343 0.90724 1.22951 0.96821 0.97526 0.99990 1.20854 0.91308 0.93576 0.87575 1.44923 1.03262 1.57035 1.28972 1.19353 0.86081 1.25344 1.05771 0.90079 1.25617 1.00448 1.00336 0.99401 1.70163 1.23848 1.38490 1.27510 0.85172 0.78695 0.77530 0.78046 1.20615 1.22174 1.20104 1.22014 0.93908 0.99288 1.03571 1.21356 0.91472 0.92678 0.91194 1.20875 0.98768 0.91561 1.04723 1.67088 1.41193 0.98657 1.18985 0.85997 0.92376 0.91996 0.82226 0.89252 0.87085 0.91560 0.87884 0.93131 0.92703 0.91232 0.89651 0.96815 0.97045 0.94422 0.83230 0.88421 0.89612 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 113.37 1.18 1.59 16 2 O -0.31 -5.69 10.48 -90.10 -0.94 -6.63 16 3 C 0.32 6.46 7.49 84.80 0.63 7.10 16 4 C -0.17 -3.52 7.42 22.75 0.17 -3.35 16 5 C -0.05 -1.09 5.06 -19.90 -0.10 -1.19 16 6 C 0.56 17.17 7.32 86.88 0.64 17.81 16 7 O -0.57 -22.21 16.29 -3.78 -0.06 -22.27 16 8 N -0.58 -17.05 2.73 -796.52 -2.17 -19.22 16 9 C 0.09 2.06 4.66 86.63 0.40 2.47 16 10 C -0.12 -2.82 6.12 30.82 0.19 -2.63 16 11 C -0.12 -3.96 5.10 30.51 0.16 -3.80 16 12 C 0.15 6.18 3.60 45.08 0.16 6.34 16 13 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 14 C 0.14 5.40 3.12 46.14 0.14 5.55 16 15 H 0.07 3.27 6.93 -2.39 -0.02 3.25 16 16 C -0.13 -5.10 6.08 31.61 0.19 -4.91 16 17 C 0.19 9.62 5.19 86.79 0.45 10.07 16 18 N -0.62 -31.56 2.91 -667.07 -1.94 -33.50 16 19 C -0.24 -13.26 10.29 84.03 0.86 -12.39 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 22 N -0.95 -57.68 10.33 21.65 0.22 -57.45 16 23 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 C -0.17 -3.50 9.40 22.63 0.21 -3.28 16 28 C 0.17 3.00 6.77 42.49 0.29 3.29 16 29 C -0.10 -1.05 10.16 71.23 0.72 -0.32 16 30 N -0.53 -10.39 9.09 -297.17 -2.70 -13.10 16 31 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 33 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 34 H 0.16 2.95 6.71 -2.91 -0.02 2.93 16 35 H 0.09 1.75 7.46 -2.39 -0.02 1.73 16 36 H 0.11 2.00 4.79 -2.38 -0.01 1.99 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.93 7.12 -2.39 -0.02 1.92 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.08 2.84 6.78 -2.38 -0.02 2.82 16 43 H 0.01 0.75 7.60 -2.39 -0.02 0.73 16 44 H 0.01 0.65 7.30 -2.39 -0.02 0.63 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 47 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.09 0.79 8.14 -2.38 -0.02 0.78 16 49 H 0.09 0.74 8.07 -2.39 -0.02 0.72 16 Total: -1.00 -73.14 384.64 2.15 -70.99 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.96 Total: 13.87 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.77 Total: 19.08 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.59 Total: -123.27 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.01 Total: -28.90 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.14 2.15 -70.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049680232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.722 kcal (2) G-P(sol) polarization free energy of solvation -73.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds