Wall clock time and date at job start Wed Apr 1 2020 04:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35429 * 117.00116 * 2 1 4 4 N 1.32236 * 119.79473 * 359.97438 * 3 2 1 5 5 C 1.31884 * 121.79979 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.40933 * 179.97438 * 5 4 3 7 7 C 1.38357 * 121.18346 * 0.02562 * 5 4 3 8 8 C 1.38339 * 119.45996 * 359.69994 * 7 5 4 9 9 C 1.39994 * 118.34520 * 0.56552 * 8 7 5 10 10 C 1.47521 * 120.59708 * 179.70987 * 9 8 7 11 11 O 1.21591 * 120.00443 * 232.63480 * 10 9 8 12 12 N 1.34782 * 119.99706 * 52.63650 * 10 9 8 13 13 C 1.47849 * 122.23260 * 355.22928 * 12 10 9 14 14 C 1.52715 * 111.06595 * 127.49675 * 13 12 10 15 15 C 1.53873 * 111.51968 * 48.53202 * 14 13 12 16 16 C 1.51079 * 107.33787 * 303.07203 * 15 14 13 17 17 H 1.09001 * 108.73895 * 308.54307 * 16 15 14 18 18 C 1.45733 * 122.22694 * 175.21059 * 12 10 9 19 19 H 1.09005 * 111.06891 * 119.49322 * 18 12 10 20 20 C 1.53427 * 116.36819 * 350.12433 * 18 12 10 21 21 C 1.55476 * 101.66693 * 207.28341 * 20 18 12 22 22 N 1.45023 * 119.19052 * 183.90299 * 16 15 14 23 23 C 1.36933 * 126.56283 * 28.78445 * 22 16 15 24 24 H 1.08000 * 120.00172 * 0.02562 * 23 22 16 25 25 C 1.38810 * 120.00312 * 180.02562 * 23 22 16 26 26 N 1.31628 * 119.99738 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00445 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46885 * 59.99418 * 27 25 23 29 29 H 1.48494 * 109.47287 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46971 * 300.00095 * 27 25 23 31 31 H 1.09005 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47079 * 299.99422 * 1 2 3 33 33 H 1.09003 * 109.47305 * 59.99960 * 1 2 3 34 34 H 1.09003 * 109.46993 * 90.00239 * 6 5 4 35 35 H 1.09005 * 109.47163 * 209.99772 * 6 5 4 36 36 H 1.08995 * 109.47345 * 330.00142 * 6 5 4 37 37 H 1.08002 * 120.27110 * 179.97438 * 7 5 4 38 38 H 1.07998 * 120.82959 * 180.27224 * 8 7 5 39 39 H 1.09003 * 109.15922 * 7.09111 * 13 12 10 40 40 H 1.09002 * 109.12200 * 247.88397 * 13 12 10 41 41 H 1.08994 * 109.06779 * 288.00156 * 14 13 12 42 42 H 1.08999 * 109.01122 * 169.01814 * 14 13 12 43 43 H 1.09000 * 109.87979 * 183.62139 * 15 14 13 44 44 H 1.08998 * 109.94793 * 62.56999 * 15 14 13 45 45 H 1.09003 * 110.98956 * 325.37489 * 20 18 12 46 46 H 1.09003 * 110.99307 * 89.19017 * 20 18 12 47 47 H 1.09000 * 109.95671 * 141.98021 * 21 20 18 48 48 H 1.09007 * 109.95970 * 263.21291 * 21 20 18 49 49 H 0.96997 * 119.99707 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3131 -0.0005 5 6 1.8770 3.5084 0.0000 6 6 0.9998 4.7338 -0.0012 7 6 3.2525 3.6576 0.0005 8 6 4.0587 2.5334 0.0069 9 6 3.4449 1.2752 0.0004 10 6 4.2569 0.0436 0.0003 11 8 4.0618 -0.8133 -0.8400 12 7 5.2152 -0.1318 0.9317 13 6 5.5645 0.9190 1.9113 14 6 5.5222 0.3755 3.3379 15 6 6.2907 -0.9521 3.4591 16 6 5.6834 -1.9160 2.4669 17 1 4.6037 -1.9369 2.6148 18 6 5.9757 -1.3702 1.0406 19 1 7.0408 -1.1901 0.8942 20 6 5.4778 -2.5520 0.1984 21 6 5.9735 -3.7652 1.0349 22 7 6.1628 -3.2841 2.4257 23 6 6.6894 -3.9958 3.4704 24 1 6.7786 -3.5385 4.4447 25 6 7.1087 -5.3048 3.2771 26 7 6.9995 -5.8623 2.0897 27 14 7.8264 -6.2759 4.7023 28 1 6.8190 -6.3784 5.7885 29 1 8.1949 -7.6374 4.2380 30 1 9.0366 -5.5834 5.2135 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 0.7872 5.0294 1.0262 35 1 1.5127 5.5473 -0.5146 36 1 0.0653 4.5112 -0.5161 37 1 3.6932 4.6436 0.0005 38 1 5.1349 2.6241 0.0118 39 1 4.8557 1.7421 1.8210 40 1 6.5683 1.2865 1.6981 41 1 4.4837 0.2136 3.6266 42 1 5.9686 1.1081 4.0103 43 1 6.1898 -1.3478 4.4697 44 1 7.3438 -0.7947 3.2262 45 1 4.3903 -2.5475 0.1238 46 1 5.9355 -2.5468 -0.7909 47 1 5.2284 -4.5605 1.0144 48 1 6.9195 -4.1309 0.6355 49 1 7.2921 -6.7772 1.9548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049769235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:13 Heat of formation + Delta-G solvation = -14.817637 kcal Electronic energy + Delta-G solvation = -31775.390615 eV Core-core repulsion = 27703.212772 eV Total energy + Delta-G solvation = -4072.177842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23466 -41.21754 -39.17211 -39.07483 -36.97662 -34.62245 -34.10990 -33.54705 -32.76935 -30.88180 -29.74239 -29.40491 -28.00241 -26.41923 -25.98569 -24.21879 -23.69733 -22.82208 -22.56155 -21.50044 -20.54400 -19.22502 -18.68223 -17.98290 -17.73716 -17.28671 -17.08765 -16.66900 -16.31353 -15.98874 -15.70791 -15.44242 -15.32534 -15.27241 -15.00596 -14.81486 -14.43405 -14.29621 -14.03074 -13.86725 -13.53392 -13.36271 -13.32709 -13.17238 -12.97748 -12.90447 -12.73403 -12.68516 -12.27069 -12.18001 -12.09592 -11.95261 -11.80806 -11.73109 -11.60069 -11.47179 -11.02669 -10.84127 -10.74496 -10.36372 -9.62156 -9.43564 -8.92689 -7.84225 -5.21791 -0.23342 0.21909 1.45014 1.49253 1.55308 1.58308 1.93783 2.04697 2.50250 2.63770 3.07607 3.32317 3.33996 3.54568 3.75786 3.88313 3.92022 3.97793 4.01191 4.05765 4.21718 4.25385 4.30839 4.32210 4.33947 4.37958 4.53617 4.55882 4.63308 4.64009 4.72966 4.75118 4.85147 4.88980 4.97713 4.99104 5.01996 5.08434 5.11905 5.19179 5.26518 5.40947 5.47141 5.50717 5.56638 5.59210 5.70643 6.15927 6.16757 6.43904 6.75840 7.04208 7.14598 7.74375 8.45030 9.27589 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019464 B = 0.002994 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.185054 B = 9349.004275 C = 9859.214169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.324 6.324 3 C 0.344 3.656 4 N -0.555 5.555 5 C 0.175 3.825 6 C -0.104 4.104 7 C -0.198 4.198 8 C -0.004 4.004 9 C -0.227 4.227 10 C 0.568 3.432 11 O -0.565 6.565 12 N -0.593 5.593 13 C 0.100 3.900 14 C -0.120 4.120 15 C -0.110 4.110 16 C 0.154 3.846 17 H -0.011 1.011 18 C 0.134 3.866 19 H 0.090 0.910 20 C -0.111 4.111 21 C 0.185 3.815 22 N -0.611 5.611 23 C -0.235 4.235 24 H 0.090 0.910 25 C -0.070 4.070 26 N -0.956 5.956 27 Si 0.981 3.019 28 H -0.279 1.279 29 H -0.297 1.297 30 H -0.270 1.270 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.116 0.884 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.066 0.934 47 H -0.004 1.004 48 H 0.030 0.970 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 28.589 -1.724 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C 0.165 3.835 4 N -0.280 5.280 5 C 0.038 3.962 6 C -0.161 4.161 7 C -0.218 4.218 8 C -0.030 4.030 9 C -0.233 4.233 10 C 0.357 3.643 11 O -0.444 6.444 12 N -0.326 5.326 13 C -0.021 4.021 14 C -0.158 4.158 15 C -0.148 4.148 16 C 0.045 3.955 17 H 0.007 0.993 18 C 0.029 3.971 19 H 0.108 0.892 20 C -0.150 4.150 21 C 0.060 3.940 22 N -0.336 5.336 23 C -0.363 4.363 24 H 0.108 0.892 25 C -0.263 4.263 26 N -0.605 5.605 27 Si 0.809 3.191 28 H -0.205 1.205 29 H -0.224 1.224 30 H -0.196 1.196 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.206 0.794 38 H 0.192 0.808 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.135 0.865 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.015 0.985 48 H 0.048 0.952 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.284 27.566 -2.120 29.164 hybrid contribution 0.688 -1.815 0.371 1.976 sum -8.596 25.751 -1.748 27.204 Atomic orbital electron populations 1.23051 0.75588 1.04204 1.02740 1.86344 1.24739 1.25235 1.86732 1.19888 0.88316 0.85119 0.90136 1.67287 1.40483 0.98646 1.21631 1.21952 0.93768 0.91904 0.88587 1.20935 0.98771 0.91695 1.04696 1.22187 0.92973 1.01076 1.05520 1.21953 1.02327 0.88750 0.89923 1.19849 0.91256 0.95553 1.16664 1.18255 0.79198 0.86249 0.80612 1.90775 1.69127 1.45187 1.39282 1.47998 1.36034 1.16250 1.32279 1.22270 1.03323 0.89367 0.87133 1.21879 1.00410 0.96606 0.96928 1.21400 1.00111 0.94687 0.98602 1.20925 0.94609 0.85145 0.94793 0.99309 1.22034 0.94865 0.83502 0.96684 0.89232 1.22631 1.00588 0.94192 0.97595 1.21419 0.97048 0.92130 0.83428 1.44340 1.72816 1.09431 1.06994 1.19388 1.32658 0.94475 0.89791 0.89243 1.25732 1.02653 0.98322 0.99554 1.70185 1.53867 1.13647 1.22768 0.85109 0.78531 0.77258 0.78180 1.20469 1.22361 1.19601 0.87483 0.91551 0.91691 0.88410 0.87238 0.90887 0.79397 0.80816 0.87567 0.88090 0.93040 0.86541 0.92498 0.90975 0.92130 0.91561 0.98525 0.95216 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.38 113.37 1.18 2.09 16 2 O -0.32 -10.84 9.66 -83.28 -0.80 -11.64 16 3 C 0.34 10.11 7.49 85.13 0.64 10.75 16 4 N -0.55 -13.00 9.11 -296.06 -2.70 -15.70 16 5 C 0.18 2.70 6.78 42.58 0.29 2.98 16 6 C -0.10 -0.74 10.16 71.23 0.72 -0.02 16 7 C -0.20 -2.27 9.71 22.32 0.22 -2.05 16 8 C 0.00 -0.07 7.59 22.72 0.17 0.10 16 9 C -0.23 -6.24 5.03 -19.91 -0.10 -6.34 16 10 C 0.57 20.04 6.85 86.69 0.59 20.63 16 11 O -0.56 -25.07 13.69 -0.03 0.00 -25.07 16 12 N -0.59 -18.96 2.91 -794.87 -2.32 -21.28 16 13 C 0.10 2.07 5.52 86.03 0.48 2.55 16 14 C -0.12 -2.73 5.93 30.79 0.18 -2.55 16 15 C -0.11 -3.63 5.45 30.26 0.16 -3.47 16 16 C 0.15 6.71 2.57 45.50 0.12 6.82 16 17 H -0.01 -0.51 8.06 -2.39 -0.02 -0.53 16 18 C 0.13 5.32 3.32 46.14 0.15 5.48 16 19 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 20 C -0.11 -5.25 4.94 31.59 0.16 -5.09 16 21 C 0.19 10.29 5.47 86.87 0.48 10.76 16 22 N -0.61 -33.27 3.35 -670.51 -2.25 -35.51 16 23 C -0.23 -13.41 9.94 84.03 0.84 -12.57 16 24 H 0.09 4.78 7.31 -2.91 -0.02 4.75 16 25 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 26 N -0.96 -60.21 10.46 21.65 0.23 -59.98 16 27 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 28 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 29 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 30 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 31 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.18 8.07 -2.38 -0.02 0.16 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 38 H 0.17 1.85 7.32 -2.91 -0.02 1.82 16 39 H 0.11 1.70 4.84 -2.39 -0.01 1.69 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.99 7.70 -2.39 -0.02 1.97 16 44 H 0.07 2.29 8.12 -2.39 -0.02 2.28 16 45 H 0.06 3.08 6.36 -2.39 -0.02 3.07 16 46 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.00 -0.22 7.81 -2.39 -0.02 -0.24 16 48 H 0.03 1.78 7.19 -2.38 -0.02 1.77 16 49 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -84.57 383.16 1.88 -82.69 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.95 Total: 11.29 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 6.74 Total: 26.43 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -7.03 Total: -132.47 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.80 Total: -36.72 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -84.57 1.88 -82.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049769235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.874 kcal (2) G-P(sol) polarization free energy of solvation -84.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds