Wall clock time and date at job start Wed Apr 1 2020 04:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35686 * 116.99974 * 2 1 4 4 C 1.38893 * 119.62520 * 180.02562 * 3 2 1 5 5 C 1.39569 * 118.94737 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.88827 * 179.97438 * 5 4 3 7 7 O 1.21517 * 119.99820 * 129.27819 * 6 5 4 8 8 N 1.34777 * 120.00250 * 309.27435 * 6 5 4 9 9 C 1.46806 * 119.61646 * 3.75043 * 8 6 5 10 10 C 1.53443 * 107.65991 * 232.18840 * 9 8 6 11 11 C 1.52755 * 108.48810 * 302.05980 * 10 9 8 12 12 C 1.52941 * 110.77209 * 63.64480 * 11 10 9 13 13 H 1.08998 * 112.27173 * 71.22717 * 12 11 10 14 14 C 1.55527 * 107.01404 * 195.23931 * 12 11 10 15 15 N 1.48549 * 104.59839 * 77.74755 * 14 12 11 16 16 C 1.36935 * 125.77928 * 204.64334 * 15 14 12 17 17 H 1.07995 * 120.00037 * 359.87956 * 16 15 14 18 18 C 1.38813 * 119.99439 * 179.87864 * 16 15 14 19 19 N 1.31612 * 120.00664 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99791 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46785 * 59.99851 * 20 18 16 22 22 H 1.48489 * 109.47420 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47063 * 300.00259 * 20 18 16 24 24 C 1.47281 * 108.51601 * 24.56373 * 15 14 12 25 25 C 1.45166 * 119.61571 * 183.48121 * 8 6 5 26 26 H 1.09000 * 109.71592 * 12.22452 * 25 8 6 27 27 C 1.39966 * 118.22094 * 359.73424 * 5 4 3 28 28 C 1.37979 * 119.12874 * 0.50128 * 27 5 4 29 29 C 1.50704 * 119.51112 * 179.75451 * 28 27 5 30 30 N 1.31913 * 120.98027 * 359.48962 * 28 27 5 31 31 H 1.09001 * 109.47183 * 300.00070 * 1 2 3 32 32 H 1.09002 * 109.47085 * 59.99767 * 1 2 3 33 33 H 1.08991 * 109.46910 * 180.02562 * 1 2 3 34 34 H 1.08002 * 120.52258 * 0.02562 * 4 3 2 35 35 H 1.09005 * 109.81922 * 351.72833 * 9 8 6 36 36 H 1.09000 * 109.82198 * 112.64303 * 9 8 6 37 37 H 1.08995 * 109.63328 * 61.76089 * 10 9 8 38 38 H 1.09006 * 109.63428 * 182.35973 * 10 9 8 39 39 H 1.08993 * 109.21562 * 183.97902 * 11 10 9 40 40 H 1.09000 * 109.21498 * 303.36215 * 11 10 9 41 41 H 1.08992 * 110.39862 * 196.65518 * 14 12 11 42 42 H 1.09003 * 110.39405 * 319.05201 * 14 12 11 43 43 H 0.96998 * 120.00824 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.98468 * 239.70215 * 24 15 14 45 45 H 1.08992 * 110.02505 * 118.40194 * 24 15 14 46 46 H 1.07994 * 120.44050 * 180.28101 * 27 5 4 47 47 H 1.08996 * 109.47287 * 269.73207 * 29 28 27 48 48 H 1.08998 * 109.47028 * 149.73121 * 29 28 27 49 49 H 1.09000 * 109.46416 * 29.73644 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 -0.0005 5 6 4.0514 2.5236 -0.0011 6 6 5.5283 2.6415 -0.0011 7 8 6.0809 3.3537 -0.8160 8 7 6.2589 1.9591 0.9028 9 6 5.5900 1.0378 1.8296 10 6 6.0347 1.4041 3.2518 11 6 7.5573 1.3048 3.3240 12 6 8.2122 2.3256 2.3923 13 1 8.1041 3.3470 2.7573 14 6 9.7004 1.9039 2.2294 15 7 9.6659 0.7738 1.2659 16 6 10.6058 -0.2164 1.1594 17 1 11.4668 -0.2160 1.8113 18 6 10.4518 -1.2205 0.2134 19 7 9.4028 -1.2206 -0.5815 20 14 11.7343 -2.5709 0.0675 21 1 11.8306 -3.3032 1.3557 22 1 11.3397 -3.5141 -1.0093 23 1 13.0519 -1.9689 -0.2594 24 6 8.4492 0.8959 0.4451 25 6 7.6988 2.1391 0.9445 26 1 7.9792 3.0018 0.3403 27 6 3.2395 3.6637 -0.0068 28 6 1.8681 3.5116 -0.0011 29 6 0.9857 4.7333 -0.0015 30 7 1.3178 2.3127 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 4.0231 0.3683 -0.0014 35 1 4.5089 1.1449 1.7413 36 1 5.8801 0.0116 1.6044 37 1 5.7228 2.4228 3.4821 38 1 5.5882 0.7112 3.9651 39 1 7.8810 1.4937 4.3475 40 1 7.8657 0.3016 3.0295 41 1 10.2876 2.7300 1.8286 42 1 10.1088 1.5750 3.1850 43 1 9.2954 -1.9221 -1.2428 44 1 7.8261 0.0101 0.5684 45 1 8.7176 1.0192 -0.6041 46 1 3.6805 4.6494 -0.0119 47 1 0.7730 5.0283 1.0260 48 1 0.0515 4.5066 -0.5152 49 1 1.4945 5.5487 -0.5157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050125497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:17 Heat of formation + Delta-G solvation = -18.242508 kcal Electronic energy + Delta-G solvation = -31470.481667 eV Core-core repulsion = 27398.155311 eV Total energy + Delta-G solvation = -4072.326356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.32036 -41.32217 -39.64246 -38.83314 -36.91152 -34.87260 -33.93937 -33.53548 -32.85168 -31.06483 -29.41345 -29.11087 -27.70044 -27.12024 -26.18552 -24.70295 -23.79460 -23.27538 -22.17414 -21.31112 -19.83204 -19.15418 -18.87159 -18.16302 -17.87148 -17.24654 -17.09508 -17.03958 -16.55831 -16.07666 -16.01099 -15.50247 -15.34809 -15.14783 -15.00722 -14.70095 -14.55824 -14.39643 -14.08408 -13.65110 -13.59048 -13.37778 -13.27241 -13.22337 -13.02788 -12.98041 -12.70411 -12.67382 -12.47171 -12.21528 -12.13202 -12.02773 -11.79112 -11.76922 -11.56694 -11.42795 -11.20934 -10.94424 -10.72227 -10.63167 -9.70009 -9.52101 -8.92317 -7.84634 -5.21190 -0.34616 -0.00148 1.41273 1.44356 1.47868 1.54042 1.72894 2.04624 2.48848 2.55184 3.03515 3.21129 3.34277 3.57353 3.70977 3.78092 3.86056 3.91780 3.95744 4.01144 4.02405 4.12903 4.33153 4.38612 4.44511 4.46056 4.49699 4.50497 4.55389 4.74421 4.76991 4.82526 4.83274 4.88063 4.89776 4.94229 4.97765 5.03115 5.05283 5.18055 5.23799 5.31859 5.37307 5.43984 5.53694 5.58445 5.74423 6.13516 6.13920 6.24268 6.68216 6.87848 7.06369 7.73652 8.39483 9.24909 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.003124 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.478124 B = 8959.587047 C = 9729.701771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.318 6.318 3 C 0.322 3.678 4 C -0.179 4.179 5 C -0.040 4.040 6 C 0.553 3.447 7 O -0.570 6.570 8 N -0.574 5.574 9 C 0.092 3.908 10 C -0.119 4.119 11 C -0.106 4.106 12 C -0.092 4.092 13 H 0.113 0.887 14 C 0.129 3.871 15 N -0.622 5.622 16 C -0.237 4.237 17 H 0.088 0.912 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.273 1.273 22 H -0.298 1.298 23 H -0.279 1.279 24 C 0.198 3.802 25 C 0.127 3.873 26 H 0.075 0.925 27 C -0.165 4.165 28 C 0.173 3.827 29 C -0.100 4.100 30 N -0.532 5.532 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.025 0.975 42 H 0.060 0.940 43 H 0.244 0.756 44 H 0.022 0.978 45 H -0.011 1.011 46 H 0.157 0.843 47 H 0.101 0.899 48 H 0.085 0.915 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.971 9.540 8.536 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.144 3.856 4 C -0.201 4.201 5 C -0.051 4.051 6 C 0.342 3.658 7 O -0.450 6.450 8 N -0.303 5.303 9 C -0.029 4.029 10 C -0.157 4.157 11 C -0.144 4.144 12 C -0.112 4.112 13 H 0.131 0.869 14 C 0.004 3.996 15 N -0.349 5.349 16 C -0.366 4.366 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.199 1.199 22 H -0.225 1.225 23 H -0.205 1.205 24 C 0.071 3.929 25 C 0.022 3.978 26 H 0.093 0.907 27 C -0.186 4.186 28 C 0.036 3.964 29 C -0.157 4.157 30 N -0.258 5.258 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.008 0.992 46 H 0.174 0.826 47 H 0.119 0.881 48 H 0.104 0.896 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.407 9.340 8.025 24.696 hybrid contribution 1.879 -1.148 -0.970 2.406 sum -19.528 8.193 7.056 22.321 Atomic orbital electron populations 1.23123 0.75247 1.04796 1.02680 1.86273 1.24878 1.23799 1.87508 1.19594 0.88617 0.85292 0.92114 1.21148 0.92919 0.98244 1.07765 1.19892 0.92179 0.94474 0.98540 1.18669 0.87135 0.79520 0.80510 1.90767 1.73095 1.41984 1.39118 1.47460 1.06603 1.42099 1.34115 1.22354 0.98355 0.92476 0.89697 1.21851 0.95523 1.03428 0.94919 1.21399 0.95308 0.98337 0.99352 1.22671 0.94947 1.00595 0.92985 0.86891 1.22184 0.94860 0.89374 0.93172 1.44921 1.23486 1.27161 1.39306 1.19435 1.00981 1.01109 1.15035 0.89465 1.25656 1.00204 1.01659 0.98536 1.70193 1.30535 1.35211 1.24261 0.85150 0.78355 0.78644 0.77173 1.19853 1.22478 1.20500 1.20795 0.87111 0.93182 0.91771 1.21616 0.79176 0.98623 0.98361 0.90676 1.22001 0.93806 0.98999 1.03800 1.21462 0.91524 0.92710 0.90735 1.20887 0.98648 0.91291 1.04915 1.67119 1.40884 0.98553 1.19198 0.91668 0.92245 0.86146 0.83947 0.87342 0.92324 0.89945 0.88317 0.89666 0.93821 0.95756 0.92125 0.94687 0.95940 0.99248 0.82554 0.88092 0.89649 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.72 16 2 O -0.32 -7.38 10.47 -90.04 -0.94 -8.33 16 3 C 0.32 8.07 7.49 84.80 0.63 8.71 16 4 C -0.18 -4.92 7.39 22.75 0.17 -4.75 16 5 C -0.04 -1.15 4.97 -19.90 -0.10 -1.25 16 6 C 0.55 19.94 7.26 86.88 0.63 20.57 16 7 O -0.57 -24.82 16.40 -3.77 -0.06 -24.88 16 8 N -0.57 -20.16 2.71 -797.92 -2.17 -22.33 16 9 C 0.09 2.65 5.10 86.47 0.44 3.09 16 10 C -0.12 -2.79 6.10 30.66 0.19 -2.61 16 11 C -0.11 -3.11 4.82 30.49 0.15 -2.96 16 12 C -0.09 -3.04 3.73 -9.35 -0.03 -3.08 16 13 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 14 C 0.13 5.14 6.58 86.85 0.57 5.71 16 15 N -0.62 -32.19 3.02 -688.70 -2.08 -34.27 16 16 C -0.24 -13.33 10.30 84.03 0.87 -12.46 16 17 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 18 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 19 N -0.95 -59.19 10.33 21.65 0.22 -58.97 16 20 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 C 0.20 10.29 4.56 86.42 0.39 10.68 16 25 C 0.13 5.17 2.91 46.03 0.13 5.30 16 26 H 0.08 3.33 6.98 -2.39 -0.02 3.31 16 27 C -0.17 -3.80 9.47 22.63 0.21 -3.59 16 28 C 0.17 3.38 6.77 42.49 0.29 3.66 16 29 C -0.10 -1.09 10.16 71.24 0.72 -0.37 16 30 N -0.53 -11.90 9.09 -297.16 -2.70 -14.60 16 31 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.14 4.08 7.13 -2.91 -0.02 4.06 16 35 H 0.11 2.66 4.54 -2.38 -0.01 2.65 16 36 H 0.06 1.95 7.52 -2.39 -0.02 1.93 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.64 7.26 -2.39 -0.02 1.63 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 2.24 7.99 -2.39 -0.02 2.22 16 43 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.02 1.28 6.49 -2.39 -0.02 1.27 16 45 H -0.01 -0.67 7.52 -2.39 -0.02 -0.68 16 46 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 47 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 Total: -1.00 -76.49 385.42 2.16 -74.34 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.95 Total: 15.49 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 6.91 Total: 24.91 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -6.73 Total: -130.17 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.01 Total: -33.21 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -76.49 2.16 -74.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050125497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds