Wall clock time and date at job start Wed Apr 1 2020 04:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35422 * 117.00424 * 2 1 4 4 N 1.32241 * 119.80006 * 0.27411 * 3 2 1 5 5 C 1.31876 * 121.80242 * 180.24676 * 4 3 2 6 6 C 1.50699 * 119.40700 * 179.75101 * 5 4 3 7 7 C 1.38363 * 121.18239 * 359.47329 * 5 4 3 8 8 C 1.38333 * 119.45924 * 0.25577 * 7 5 4 9 9 C 1.39981 * 118.35137 * 359.97438 * 8 7 5 10 10 C 1.47518 * 120.59979 * 179.97438 * 9 8 7 11 11 O 1.21595 * 120.00394 * 125.45390 * 10 9 8 12 12 N 1.34777 * 120.00146 * 305.45700 * 10 9 8 13 13 C 1.46805 * 119.61361 * 4.11932 * 12 10 9 14 14 C 1.53446 * 107.65634 * 232.18469 * 13 12 10 15 15 C 1.52751 * 108.49007 * 302.05883 * 14 13 12 16 16 C 1.52945 * 110.76950 * 63.64565 * 15 14 13 17 17 H 1.09002 * 112.27448 * 71.23319 * 16 15 14 18 18 C 1.55533 * 107.00963 * 195.23460 * 16 15 14 19 19 N 1.48551 * 104.59628 * 77.75476 * 18 16 15 20 20 C 1.36933 * 125.78055 * 204.64595 * 19 18 16 21 21 H 1.08003 * 119.99854 * 359.86859 * 20 19 18 22 22 C 1.38815 * 120.00000 * 179.86430 * 20 19 18 23 23 N 1.31618 * 119.99796 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46987 * 60.00330 * 24 22 20 26 26 H 1.48497 * 109.47193 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47126 * 300.00568 * 24 22 20 28 28 C 1.47285 * 108.51684 * 24.55458 * 19 18 16 29 29 C 1.45175 * 119.61895 * 183.84414 * 12 10 9 30 30 H 1.08998 * 109.70537 * 12.22701 * 29 12 10 31 31 H 1.09000 * 109.47118 * 300.00291 * 1 2 3 32 32 H 1.09004 * 109.47027 * 59.99892 * 1 2 3 33 33 H 1.09004 * 109.47644 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46864 * 269.72573 * 6 5 4 35 35 H 1.08999 * 109.47186 * 149.72980 * 6 5 4 36 36 H 1.08997 * 109.46960 * 29.72342 * 6 5 4 37 37 H 1.08002 * 120.26531 * 180.23494 * 7 5 4 38 38 H 1.08000 * 120.82517 * 179.97438 * 8 7 5 39 39 H 1.08996 * 109.82245 * 351.72409 * 13 12 10 40 40 H 1.09007 * 109.82252 * 112.64669 * 13 12 10 41 41 H 1.08993 * 109.64008 * 61.76242 * 14 13 12 42 42 H 1.09007 * 109.63413 * 182.36702 * 14 13 12 43 43 H 1.09000 * 109.22066 * 183.98081 * 15 14 13 44 44 H 1.08998 * 109.21773 * 303.31746 * 15 14 13 45 45 H 1.09005 * 110.39627 * 196.64988 * 18 16 15 46 46 H 1.08995 * 110.40070 * 319.05399 * 18 16 15 47 47 H 0.97004 * 119.99592 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.98500 * 239.70298 * 28 19 18 49 49 H 1.08988 * 110.02178 * 118.40843 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 0.0055 5 6 1.8772 3.5084 0.0009 6 6 1.0001 4.7338 0.0019 7 6 3.2527 3.6574 0.0009 8 6 4.0588 2.5331 0.0005 9 6 3.4450 1.2751 0.0006 10 6 4.2569 0.0434 -0.0004 11 8 4.0823 -0.8007 0.8572 12 7 5.1924 -0.1463 -0.9519 13 6 5.4594 0.9165 -1.9289 14 6 5.3636 0.2963 -3.3291 15 6 6.3690 -0.8500 -3.4211 16 6 6.0150 -1.9624 -2.4329 17 1 5.1225 -2.5121 -2.7319 18 6 7.2668 -2.8773 -2.3103 19 7 8.1911 -2.1298 -1.4195 20 6 9.5532 -2.2654 -1.3839 21 1 10.0434 -2.9673 -2.0423 22 6 10.3041 -1.5005 -0.5017 23 7 9.7066 -0.6454 0.3008 24 14 12.1621 -1.6861 -0.4527 25 1 12.7279 -1.3555 -1.7853 26 1 12.7249 -0.7647 0.5669 27 1 12.5107 -3.0860 -0.1004 28 6 7.3961 -1.2158 -0.5817 29 6 5.9284 -1.3969 -0.9952 30 1 5.4522 -2.1265 -0.3404 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 0.7886 5.0300 -1.0256 35 1 1.5124 5.5469 0.5162 36 1 0.0649 4.5109 0.5155 37 1 3.6935 4.6434 0.0009 38 1 5.1350 2.6238 0.0001 39 1 4.7188 1.7093 -1.8243 40 1 6.4594 1.3207 -1.7713 41 1 4.3561 -0.0862 -3.4922 42 1 5.5983 1.0503 -4.0805 43 1 6.3613 -1.2537 -4.4336 44 1 7.3657 -0.4721 -3.1939 45 1 6.9959 -3.8340 -1.8635 46 1 7.7234 -3.0296 -3.2883 47 1 10.2313 -0.1112 0.9176 48 1 7.7077 -0.1857 -0.7549 49 1 7.5209 -1.4705 0.4706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050159115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:22 Heat of formation + Delta-G solvation = 3.246009 kcal Electronic energy + Delta-G solvation = -31797.562841 eV Core-core repulsion = 27726.168297 eV Total energy + Delta-G solvation = -4071.394544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16230 -39.85164 -38.17971 -37.72076 -35.20355 -33.43515 -32.52606 -31.94182 -31.86511 -29.28866 -28.70056 -27.60091 -26.68767 -25.50216 -24.08209 -23.24929 -22.77548 -21.89495 -20.74493 -19.89967 -18.42933 -18.08002 -17.21467 -16.96115 -16.83884 -16.22756 -15.73284 -15.02749 -14.71248 -14.59633 -14.38894 -14.31741 -14.24491 -13.97890 -13.81100 -13.51109 -13.09073 -12.89704 -12.76890 -12.61822 -12.49999 -12.30492 -11.94817 -11.88540 -11.78610 -11.54001 -11.22595 -11.01321 -10.97037 -10.75939 -10.64031 -10.40086 -10.27938 -10.14379 -9.90689 -9.87058 -9.76400 -9.57481 -9.33704 -8.58800 -8.55746 -8.07248 -6.81540 -5.68129 -3.02075 0.69283 1.09347 2.85583 2.98608 3.26343 3.41779 3.46348 3.47414 3.57769 3.92911 4.50087 4.51582 4.59665 4.82843 4.97325 5.02660 5.11189 5.14343 5.17476 5.20173 5.26013 5.27597 5.28471 5.41849 5.47493 5.52334 5.53004 5.64736 5.70897 5.72470 5.75927 5.87308 5.96083 6.05012 6.13184 6.20395 6.21239 6.31075 6.35100 6.48363 6.67564 6.77688 6.95112 6.97400 7.08303 7.51994 7.58102 7.62374 7.83152 7.85107 8.24926 8.51939 9.22711 9.82771 10.49756 11.42901 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.003161 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.165490 B = 8855.755046 C = 9387.099652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.288 6.288 3 C 0.366 3.634 4 N -0.543 5.543 5 C 0.180 3.820 6 C -0.106 4.106 7 C -0.215 4.215 8 C -0.008 4.008 9 C -0.196 4.196 10 C 0.567 3.433 11 O -0.526 6.526 12 N -0.580 5.580 13 C 0.100 3.900 14 C -0.130 4.130 15 C -0.109 4.109 16 C -0.111 4.111 17 H 0.077 0.923 18 C 0.135 3.865 19 N -0.603 5.603 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.179 3.821 29 C 0.119 3.881 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.022 0.978 46 H 0.045 0.955 47 H 0.252 0.748 48 H 0.050 0.950 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.237 10.771 -5.349 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.193 6.193 3 C 0.186 3.814 4 N -0.268 5.268 5 C 0.043 3.957 6 C -0.163 4.163 7 C -0.235 4.235 8 C -0.033 4.033 9 C -0.202 4.202 10 C 0.353 3.647 11 O -0.402 6.402 12 N -0.311 5.311 13 C -0.023 4.023 14 C -0.168 4.168 15 C -0.147 4.147 16 C -0.131 4.131 17 H 0.095 0.905 18 C 0.009 3.991 19 N -0.331 5.331 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.054 3.946 29 C 0.015 3.985 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.928 10.022 -4.759 21.939 hybrid contribution 1.712 0.125 0.076 1.718 sum -17.215 10.147 -4.683 20.525 Atomic orbital electron populations 1.22900 0.77216 1.03178 1.02253 1.86365 1.22775 1.23720 1.86488 1.19626 0.87805 0.84790 0.89174 1.67192 1.40269 0.98183 1.21185 1.21093 0.92141 0.91846 0.90641 1.20784 0.99297 0.92832 1.03385 1.21724 0.93752 0.99898 1.08163 1.21692 1.01215 0.89984 0.90418 1.19904 0.91595 0.95593 1.13100 1.17790 0.79625 0.85541 0.81708 1.90790 1.68227 1.44630 1.36537 1.47364 1.36886 1.17098 1.29754 1.22015 1.01979 0.89859 0.88405 1.21858 1.00089 0.98741 0.96089 1.21437 1.00123 0.94929 0.98178 1.22655 0.98478 0.97206 0.94733 0.90500 1.21949 0.89210 0.93431 0.94487 1.44669 1.01930 1.44693 1.41776 1.18999 0.80239 1.18707 1.17458 0.90442 1.24787 0.97992 0.98968 0.98692 1.69955 1.33586 1.27617 1.25698 0.86210 0.85181 0.77300 0.77112 1.21261 1.21673 1.21236 1.21229 0.83536 0.95149 0.94727 1.21961 0.95622 0.84220 0.96683 0.88973 0.92208 0.92329 0.88476 0.89958 0.90175 0.90356 0.83888 0.83157 0.90180 0.90364 0.92118 0.91178 0.92597 0.89953 0.96043 0.93706 0.93773 0.93149 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.29 -4.44 9.71 -20.14 -0.20 -4.63 16 3 C 0.37 5.49 7.50 -16.61 -0.12 5.36 16 4 N -0.54 -6.95 9.11 -9.21 -0.08 -7.03 16 5 C 0.18 1.85 6.78 -82.53 -0.56 1.29 16 6 C -0.11 -0.68 10.16 36.01 0.37 -0.31 16 7 C -0.22 -2.09 9.71 -39.50 -0.38 -2.48 16 8 C -0.01 -0.09 7.55 -38.89 -0.29 -0.39 16 9 C -0.20 -3.03 4.83 -104.69 -0.51 -3.53 16 10 C 0.57 10.70 6.83 -12.48 -0.09 10.62 16 11 O -0.53 -11.92 16.14 3.10 0.05 -11.87 16 12 N -0.58 -10.41 2.71 -166.41 -0.45 -10.86 16 13 C 0.10 1.46 5.25 -3.64 -0.02 1.44 16 14 C -0.13 -1.74 6.10 -26.63 -0.16 -1.91 16 15 C -0.11 -1.75 4.82 -26.89 -0.13 -1.88 16 16 C -0.11 -1.98 3.73 -88.39 -0.33 -2.31 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 18 C 0.14 2.80 6.58 -1.56 -0.01 2.79 16 19 N -0.60 -15.28 3.02 -169.03 -0.51 -15.79 16 20 C -0.23 -6.24 10.30 -15.06 -0.16 -6.39 16 21 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.02 10.33 55.49 0.57 -26.44 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.18 4.42 4.56 -3.32 -0.02 4.41 16 29 C 0.12 2.43 2.91 -67.44 -0.20 2.24 16 30 H 0.09 2.06 6.98 -51.93 -0.36 1.69 16 31 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.36 8.07 -51.93 -0.42 -0.05 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.15 1.69 7.44 -52.49 -0.39 1.30 16 39 H 0.08 0.99 4.72 -51.93 -0.25 0.74 16 40 H 0.08 1.21 7.52 -51.92 -0.39 0.82 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.58 7.26 -51.93 -0.38 1.20 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.04 0.88 7.99 -51.93 -0.41 0.47 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.05 1.33 6.49 -51.93 -0.34 0.99 16 49 H 0.05 1.31 7.52 -51.94 -0.39 0.92 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -34.31 384.90 -9.01 -43.32 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.52 Total: 0.33 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -1.65 Total: 10.09 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.47 Total: -60.13 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.15 Total: -16.51 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.31 -9.01 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050159115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.567 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds