Wall clock time and date at job start Wed Apr 1 2020 04:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38352 * 119.40334 * 2 1 4 4 C 1.38348 * 119.45385 * 179.70091 * 3 2 1 5 5 C 1.39984 * 118.34906 * 0.55950 * 4 3 2 6 6 C 1.47525 * 120.59498 * 179.76145 * 5 4 3 7 7 O 1.21595 * 119.99797 * 232.77977 * 6 5 4 8 8 N 1.34772 * 120.00199 * 52.77918 * 6 5 4 9 9 C 1.46942 * 120.72103 * 176.06967 * 8 6 5 10 10 C 1.53192 * 108.90664 * 234.31034 * 9 8 6 11 11 C 1.53180 * 109.27111 * 304.61470 * 10 9 8 12 12 C 1.52060 * 109.73736 * 59.92500 * 11 10 9 13 13 C 1.54581 * 110.67659 * 64.31064 * 12 11 10 14 14 C 1.54471 * 102.76067 * 152.61555 * 13 12 11 15 15 N 1.47078 * 107.42714 * 338.69470 * 14 13 12 16 16 C 1.36941 * 125.62985 * 178.90581 * 15 14 13 17 17 H 1.07993 * 120.00213 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99858 * 0.02612 * 16 15 14 19 19 N 1.31619 * 120.00063 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00124 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46924 * 89.99872 * 20 18 16 22 22 H 1.48499 * 109.46960 * 209.99788 * 20 18 16 23 23 H 1.48499 * 109.46811 * 330.00045 * 20 18 16 24 24 C 1.47574 * 108.74250 * 358.93086 * 15 14 13 25 25 C 1.47097 * 120.71950 * 356.05084 * 8 6 5 26 26 C 1.40275 * 118.80765 * 359.48346 * 5 4 3 27 27 O 1.35422 * 119.80525 * 180.25470 * 26 5 4 28 28 N 1.31882 * 119.41082 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46941 * 269.98001 * 1 2 3 30 30 H 1.08992 * 109.46928 * 29.98043 * 1 2 3 31 31 H 1.08996 * 109.46471 * 149.98047 * 1 2 3 32 32 H 1.07994 * 120.27644 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.82280 * 180.28907 * 4 3 2 34 34 H 1.09001 * 109.56928 * 114.47967 * 9 8 6 35 35 H 1.09004 * 109.56278 * 354.13540 * 9 8 6 36 36 H 1.08996 * 109.50769 * 184.67406 * 10 9 8 37 37 H 1.09003 * 109.53461 * 64.57092 * 10 9 8 38 38 H 1.09000 * 109.42818 * 299.84288 * 11 10 9 39 39 H 1.09000 * 109.38441 * 179.97438 * 11 10 9 40 40 H 1.08999 * 110.71150 * 34.34608 * 13 12 11 41 41 H 1.08999 * 110.86416 * 270.95861 * 13 12 11 42 42 H 1.09004 * 109.87978 * 219.19058 * 14 13 12 43 43 H 1.09004 * 109.87689 * 98.19761 * 14 13 12 44 44 H 0.97002 * 120.00242 * 179.97438 * 19 18 16 45 45 H 1.08993 * 110.37799 * 142.11750 * 24 15 14 46 46 H 1.09001 * 110.37290 * 264.46281 * 24 15 14 47 47 H 1.09001 * 109.56672 * 7.97309 * 25 8 6 48 48 H 1.09002 * 109.56877 * 247.61876 * 25 8 6 49 49 H 0.96704 * 113.99985 * 89.99530 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5698 1.2065 0.0063 5 6 4.2356 -0.0248 0.0004 6 6 5.7098 -0.0813 0.0014 7 8 6.2936 -0.7367 -0.8401 8 7 6.4094 0.5935 0.9350 9 6 7.8728 0.4802 1.0039 10 6 8.2720 0.0619 2.4225 11 6 7.6861 1.0587 3.4273 12 6 6.1701 1.0745 3.3104 13 6 5.5777 -0.2971 3.7071 14 6 4.1664 0.0744 4.2134 15 7 4.1914 1.4978 4.5828 16 6 3.1276 2.2175 5.0579 17 1 3.2483 3.2627 5.3013 18 6 1.8942 1.6034 5.2267 19 7 1.7470 0.3297 4.9296 20 14 0.4429 2.5853 5.8741 21 1 -0.2928 3.1906 4.7350 22 1 -0.4663 1.6856 6.6286 23 1 0.9341 3.6601 6.7734 24 6 5.5519 2.0226 4.3563 25 6 5.7246 1.4598 1.9068 26 6 3.4759 -1.2040 -0.0004 27 8 4.0992 -2.4063 -0.0008 28 7 2.1547 -1.1488 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3632 -0.8898 -0.5141 32 1 1.6411 2.1375 -0.0004 33 1 4.1223 2.1345 0.0111 34 1 8.3252 1.4430 0.7664 35 1 8.2146 -0.2712 0.2920 36 1 9.3586 0.0553 2.5079 37 1 7.8845 -0.9354 2.6311 38 1 8.0762 2.0550 3.2191 39 1 7.9687 0.7625 4.4375 40 1 6.1650 -0.7550 4.5031 41 1 5.5160 -0.9580 2.8426 42 1 3.9141 -0.5303 5.0846 43 1 3.4339 -0.0907 3.4233 44 1 0.8851 -0.0995 5.0479 45 1 5.5065 3.0395 3.9668 46 1 6.1282 1.9949 5.2812 47 1 4.6463 1.3281 1.8169 48 1 5.9842 2.5009 1.7143 49 1 4.2800 -2.7559 0.8825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054203265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:12 Heat of formation + Delta-G solvation = -7.523744 kcal Electronic energy + Delta-G solvation = -32987.262229 eV Core-core repulsion = 28915.400674 eV Total energy + Delta-G solvation = -4071.861556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00041 -39.76128 -38.25277 -37.07142 -35.69156 -33.60547 -32.80719 -31.81571 -31.43529 -29.95343 -28.76817 -27.93987 -25.74922 -25.43240 -23.91067 -23.25268 -22.72198 -21.69578 -20.35543 -19.68968 -18.60682 -18.26799 -17.19788 -16.95879 -16.58909 -16.09447 -15.48251 -15.17732 -14.82170 -14.68801 -14.42042 -14.05551 -14.02851 -13.70416 -13.53691 -13.20261 -13.15920 -12.87667 -12.64095 -12.44108 -12.34228 -12.05533 -12.03399 -11.89292 -11.76326 -11.51858 -11.16358 -11.07910 -10.93821 -10.83893 -10.74235 -10.21398 -10.14915 -10.02877 -9.97434 -9.81569 -9.67042 -9.51246 -9.23738 -8.65972 -8.65335 -8.45492 -6.89297 -5.76306 -3.10345 0.88176 1.28596 2.74250 3.07145 3.33335 3.39988 3.41555 3.54311 3.91348 4.42983 4.46559 4.72412 4.76259 4.87778 4.92988 5.05448 5.11063 5.13060 5.26506 5.40555 5.43378 5.46552 5.47318 5.56631 5.66616 5.72066 5.74816 5.81473 5.84482 5.92194 5.95423 5.97309 6.03683 6.09950 6.13607 6.15727 6.28760 6.30905 6.45002 6.46917 6.56319 6.61447 6.69977 6.77536 7.44851 7.49483 7.53850 7.60398 7.75526 8.03249 8.18655 8.25264 9.15852 9.76383 10.42442 11.34464 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.006133 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.796018 B = 4564.499808 C = 6839.579634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.180 3.820 3 C -0.178 4.178 4 C -0.023 4.023 5 C -0.202 4.202 6 C 0.573 3.427 7 O -0.531 6.531 8 N -0.602 5.602 9 C 0.113 3.887 10 C -0.132 4.132 11 C -0.102 4.102 12 C -0.086 4.086 13 C -0.130 4.130 14 C 0.181 3.819 15 N -0.603 5.603 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.917 5.917 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.148 3.852 25 C 0.119 3.881 26 C 0.365 3.635 27 O -0.472 6.472 28 N -0.502 5.502 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.251 0.749 45 H 0.039 0.961 46 H 0.023 0.977 47 H 0.102 0.898 48 H 0.065 0.935 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 1.865 -7.644 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.042 3.958 3 C -0.197 4.197 4 C -0.049 4.049 5 C -0.209 4.209 6 C 0.360 3.640 7 O -0.407 6.407 8 N -0.335 5.335 9 C -0.009 4.009 10 C -0.170 4.170 11 C -0.140 4.140 12 C -0.088 4.088 13 C -0.169 4.169 14 C 0.057 3.943 15 N -0.329 5.329 16 C -0.357 4.357 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.737 3.263 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.021 3.979 25 C -0.003 4.003 26 C 0.185 3.815 27 O -0.279 6.279 28 N -0.221 5.221 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.120 0.880 48 H 0.084 0.916 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 6.578 0.707 -8.644 10.885 hybrid contribution -0.296 1.177 1.156 1.676 sum 6.282 1.884 -7.489 9.954 Atomic orbital electron populations 1.20816 0.88349 1.03309 1.04049 1.21149 0.96973 0.87093 0.90613 1.21835 0.94358 0.99664 1.03882 1.21567 0.94532 0.96633 0.92132 1.20768 0.94553 0.94707 1.10822 1.17905 0.86232 0.78794 0.81045 1.90777 1.70761 1.41705 1.37500 1.48103 1.07229 1.46355 1.31775 1.21574 0.79502 1.01978 0.97827 1.21924 1.00364 1.00262 0.94486 1.21331 0.94478 0.98970 0.99230 1.21435 0.94375 0.98187 0.94787 1.22847 0.99595 0.95023 0.99398 1.21119 0.89823 0.85045 0.98360 1.44495 1.04866 1.06822 1.76763 1.19008 0.87347 0.93103 1.36292 0.90560 1.24757 0.97578 0.96105 1.01629 1.69964 1.23357 1.09397 1.53723 0.86205 0.82753 0.78828 0.78488 1.21604 1.21730 1.20779 1.21435 0.87410 0.94915 0.94151 1.21833 0.98960 0.92614 0.86899 1.18885 0.86275 0.84339 0.91973 1.84714 1.76702 1.32750 1.33716 1.67031 1.09031 1.30491 1.15561 0.89271 0.90437 0.90405 0.83886 0.84146 0.91629 0.89242 0.91003 0.91330 0.92055 0.91490 0.92396 0.92954 0.94233 0.94060 0.93822 0.94297 0.95943 0.87993 0.91638 0.74031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.16 36.01 0.37 -0.99 16 2 C 0.18 2.84 6.78 -82.53 -0.56 2.28 16 3 C -0.18 -2.58 9.71 -39.50 -0.38 -2.96 16 4 C -0.02 -0.34 7.55 -38.89 -0.29 -0.63 16 5 C -0.20 -3.38 4.94 -104.69 -0.52 -3.90 16 6 C 0.57 9.62 6.91 -12.48 -0.09 9.53 16 7 O -0.53 -10.31 16.16 1.28 0.02 -10.29 16 8 N -0.60 -8.70 2.60 -174.43 -0.45 -9.16 16 9 C 0.11 1.39 6.40 -3.70 -0.02 1.37 16 10 C -0.13 -1.48 5.92 -26.54 -0.16 -1.64 16 11 C -0.10 -1.26 4.64 -27.12 -0.13 -1.38 16 12 C -0.09 -1.33 0.56 -153.97 -0.09 -1.41 16 13 C -0.13 -2.28 4.92 -25.13 -0.12 -2.41 16 14 C 0.18 4.11 4.95 -2.96 -0.01 4.09 16 15 N -0.60 -14.06 3.39 -170.32 -0.58 -14.64 16 16 C -0.23 -5.94 10.28 -15.06 -0.15 -6.10 16 17 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 18 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 19 N -0.92 -25.43 10.30 55.49 0.57 -24.85 16 20 Si 0.91 21.01 29.55 -169.99 -5.02 15.98 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.15 2.74 6.15 -2.88 -0.02 2.72 16 25 C 0.12 1.77 4.11 -4.11 -0.02 1.76 16 26 C 0.37 6.48 7.75 -16.61 -0.13 6.35 16 27 O -0.47 -7.92 12.74 -21.96 -0.28 -8.20 16 28 N -0.50 -8.94 10.28 -9.21 -0.09 -9.03 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.14 1.78 7.33 -52.49 -0.38 1.39 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.17 7.03 -51.93 -0.36 0.81 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 41 H 0.05 0.90 7.70 -51.93 -0.40 0.50 16 42 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 43 H 0.04 1.05 7.37 -51.93 -0.38 0.67 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.04 0.69 8.01 -51.93 -0.42 0.28 16 46 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 47 H 0.10 1.75 4.35 -51.93 -0.23 1.53 16 48 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 49 H 0.40 5.17 9.06 45.56 0.41 5.58 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -32.51 384.52 -9.17 -41.68 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.71 Total: 6.24 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -2.42 Total: 6.47 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.55 Total: -57.68 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.26 Total: -18.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.51 -9.17 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054203265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.157 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds