Wall clock time and date at job start Wed Apr 1 2020 04:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38352 * 119.40334 * 2 1 4 4 C 1.38348 * 119.45385 * 179.70091 * 3 2 1 5 5 C 1.39984 * 118.34906 * 0.55950 * 4 3 2 6 6 C 1.47525 * 120.59498 * 179.76145 * 5 4 3 7 7 O 1.21595 * 119.99797 * 232.77977 * 6 5 4 8 8 N 1.34772 * 120.00199 * 52.77918 * 6 5 4 9 9 C 1.46942 * 120.72103 * 176.06967 * 8 6 5 10 10 C 1.53192 * 108.90664 * 234.31034 * 9 8 6 11 11 C 1.53180 * 109.27111 * 304.61470 * 10 9 8 12 12 C 1.52060 * 109.73736 * 59.92500 * 11 10 9 13 13 C 1.54581 * 110.67659 * 64.31064 * 12 11 10 14 14 C 1.54471 * 102.76067 * 152.61555 * 13 12 11 15 15 N 1.47078 * 107.42714 * 338.69470 * 14 13 12 16 16 C 1.36941 * 125.62985 * 178.90581 * 15 14 13 17 17 H 1.07993 * 120.00213 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99858 * 0.02612 * 16 15 14 19 19 N 1.31619 * 120.00063 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00124 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46924 * 89.99872 * 20 18 16 22 22 H 1.48499 * 109.46960 * 209.99788 * 20 18 16 23 23 H 1.48499 * 109.46811 * 330.00045 * 20 18 16 24 24 C 1.47574 * 108.74250 * 358.93086 * 15 14 13 25 25 C 1.47097 * 120.71950 * 356.05084 * 8 6 5 26 26 C 1.40275 * 118.80765 * 359.48346 * 5 4 3 27 27 O 1.35422 * 119.80525 * 180.25470 * 26 5 4 28 28 N 1.31882 * 119.41082 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46941 * 269.98001 * 1 2 3 30 30 H 1.08992 * 109.46928 * 29.98043 * 1 2 3 31 31 H 1.08996 * 109.46471 * 149.98047 * 1 2 3 32 32 H 1.07994 * 120.27644 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.82280 * 180.28907 * 4 3 2 34 34 H 1.09001 * 109.56928 * 114.47967 * 9 8 6 35 35 H 1.09004 * 109.56278 * 354.13540 * 9 8 6 36 36 H 1.08996 * 109.50769 * 184.67406 * 10 9 8 37 37 H 1.09003 * 109.53461 * 64.57092 * 10 9 8 38 38 H 1.09000 * 109.42818 * 299.84288 * 11 10 9 39 39 H 1.09000 * 109.38441 * 179.97438 * 11 10 9 40 40 H 1.08999 * 110.71150 * 34.34608 * 13 12 11 41 41 H 1.08999 * 110.86416 * 270.95861 * 13 12 11 42 42 H 1.09004 * 109.87978 * 219.19058 * 14 13 12 43 43 H 1.09004 * 109.87689 * 98.19761 * 14 13 12 44 44 H 0.97002 * 120.00242 * 179.97438 * 19 18 16 45 45 H 1.08993 * 110.37799 * 142.11750 * 24 15 14 46 46 H 1.09001 * 110.37290 * 264.46281 * 24 15 14 47 47 H 1.09001 * 109.56672 * 7.97309 * 25 8 6 48 48 H 1.09002 * 109.56877 * 247.61876 * 25 8 6 49 49 H 0.96704 * 113.99985 * 89.99530 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5698 1.2065 0.0063 5 6 4.2356 -0.0248 0.0004 6 6 5.7098 -0.0813 0.0014 7 8 6.2936 -0.7367 -0.8401 8 7 6.4094 0.5935 0.9350 9 6 7.8728 0.4802 1.0039 10 6 8.2720 0.0619 2.4225 11 6 7.6861 1.0587 3.4273 12 6 6.1701 1.0745 3.3104 13 6 5.5777 -0.2971 3.7071 14 6 4.1664 0.0744 4.2134 15 7 4.1914 1.4978 4.5828 16 6 3.1276 2.2175 5.0579 17 1 3.2483 3.2627 5.3013 18 6 1.8942 1.6034 5.2267 19 7 1.7470 0.3297 4.9296 20 14 0.4429 2.5853 5.8741 21 1 -0.2928 3.1906 4.7350 22 1 -0.4663 1.6856 6.6286 23 1 0.9341 3.6601 6.7734 24 6 5.5519 2.0226 4.3563 25 6 5.7246 1.4598 1.9068 26 6 3.4759 -1.2040 -0.0004 27 8 4.0992 -2.4063 -0.0008 28 7 2.1547 -1.1488 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3632 -0.8898 -0.5141 32 1 1.6411 2.1375 -0.0004 33 1 4.1223 2.1345 0.0111 34 1 8.3252 1.4430 0.7664 35 1 8.2146 -0.2712 0.2920 36 1 9.3586 0.0553 2.5079 37 1 7.8845 -0.9354 2.6311 38 1 8.0762 2.0550 3.2191 39 1 7.9687 0.7625 4.4375 40 1 6.1650 -0.7550 4.5031 41 1 5.5160 -0.9580 2.8426 42 1 3.9141 -0.5303 5.0846 43 1 3.4339 -0.0907 3.4233 44 1 0.8851 -0.0995 5.0479 45 1 5.5065 3.0395 3.9668 46 1 6.1282 1.9949 5.2812 47 1 4.6463 1.3281 1.8169 48 1 5.9842 2.5009 1.7143 49 1 4.2800 -2.7559 0.8825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054203265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:11 Heat of formation + Delta-G solvation = -30.401785 kcal Electronic energy + Delta-G solvation = -32988.254295 eV Core-core repulsion = 28915.400674 eV Total energy + Delta-G solvation = -4072.853622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23633 -41.01000 -39.63744 -38.33901 -37.14540 -34.85848 -34.39642 -33.05668 -32.62828 -31.53868 -30.36614 -29.08019 -27.35573 -26.57575 -25.48000 -24.54263 -23.86670 -22.85678 -22.03307 -21.01670 -19.88148 -19.55593 -18.68365 -18.34693 -17.94159 -17.36794 -16.76790 -16.69519 -16.38003 -15.86631 -15.79453 -15.57579 -15.20274 -15.00169 -14.82246 -14.50002 -14.32467 -14.03925 -13.92960 -13.83062 -13.58948 -13.50506 -13.30687 -13.12467 -13.05594 -12.90441 -12.74599 -12.72415 -12.36410 -12.12417 -12.00170 -11.91421 -11.73120 -11.62082 -11.31151 -11.21348 -11.15931 -10.75715 -10.64528 -10.48774 -9.87882 -9.62382 -8.82171 -7.77357 -5.12235 -0.34652 0.08185 1.47065 1.48844 1.50592 1.58227 1.89774 2.34602 2.53765 2.69618 3.25084 3.41203 3.56048 3.64618 3.69155 3.70886 3.81713 3.95593 3.97804 4.12365 4.23952 4.29245 4.33918 4.37867 4.44575 4.60168 4.61136 4.63927 4.73963 4.75158 4.84964 4.87932 4.90475 4.93176 4.98881 5.03015 5.06536 5.07698 5.13231 5.19355 5.42095 5.46165 5.48169 5.53184 5.55431 5.67125 5.80222 6.22018 6.23858 6.40270 6.80372 7.00626 7.16032 7.84658 8.49424 9.31724 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.006133 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.796018 B = 4564.499808 C = 6839.579634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.161 3.839 3 C -0.179 4.179 4 C -0.023 4.023 5 C -0.215 4.215 6 C 0.574 3.426 7 O -0.564 6.564 8 N -0.592 5.592 9 C 0.108 3.892 10 C -0.124 4.124 11 C -0.097 4.097 12 C -0.072 4.072 13 C -0.116 4.116 14 C 0.198 3.802 15 N -0.619 5.619 16 C -0.233 4.233 17 H 0.084 0.916 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.966 3.034 21 H -0.281 1.281 22 H -0.304 1.304 23 H -0.272 1.272 24 C 0.144 3.856 25 C 0.122 3.878 26 C 0.342 3.658 27 O -0.484 6.484 28 N -0.529 5.529 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.052 0.948 42 H -0.007 1.007 43 H 0.004 0.996 44 H 0.241 0.759 45 H 0.054 0.946 46 H 0.028 0.972 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 4.560 -7.759 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.023 3.977 3 C -0.199 4.199 4 C -0.048 4.048 5 C -0.222 4.222 6 C 0.362 3.638 7 O -0.443 6.443 8 N -0.323 5.323 9 C -0.013 4.013 10 C -0.162 4.162 11 C -0.134 4.134 12 C -0.074 4.074 13 C -0.154 4.154 14 C 0.073 3.927 15 N -0.346 5.346 16 C -0.362 4.362 17 H 0.102 0.898 18 C -0.252 4.252 19 N -0.594 5.594 20 Si 0.795 3.205 21 H -0.208 1.208 22 H -0.231 1.231 23 H -0.197 1.197 24 C 0.018 3.982 25 C -0.001 4.001 26 C 0.163 3.837 27 O -0.293 6.293 28 N -0.250 5.250 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.183 0.817 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.012 0.988 43 H 0.022 0.978 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.096 0.904 48 H 0.111 0.889 49 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.450 3.440 -8.737 12.632 hybrid contribution -0.854 0.361 1.254 1.559 sum 7.596 3.801 -7.483 11.320 Atomic orbital electron populations 1.20887 0.86360 1.05143 1.03721 1.21778 0.98515 0.87158 0.90247 1.22231 0.94538 1.00418 1.02670 1.21902 0.94954 0.96863 0.91120 1.20887 0.94837 0.95081 1.11384 1.17900 0.86180 0.78588 0.81125 1.90754 1.71300 1.43282 1.39009 1.48108 1.08237 1.45368 1.30626 1.21826 0.77796 1.03267 0.98374 1.21893 1.02228 0.98935 0.93186 1.21321 0.91363 1.00805 0.99947 1.21368 0.96700 0.95203 0.94128 1.22657 0.96563 0.96730 0.99455 1.20728 0.92039 0.84661 0.95263 1.44730 1.06386 1.07011 1.76437 1.19381 0.88140 0.93594 1.35119 0.89808 1.25481 1.00076 0.96928 1.02724 1.70199 1.23049 1.10876 1.55295 0.85268 0.79738 0.77499 0.77995 1.20817 1.23081 1.19695 1.21643 0.85060 0.96180 0.95277 1.21790 0.97724 0.93970 0.86568 1.19146 0.86666 0.84855 0.93029 1.84667 1.76765 1.32966 1.34854 1.67037 1.09362 1.31909 1.16647 0.90436 0.87170 0.90097 0.80887 0.81723 0.88853 0.90228 0.87776 0.92935 0.89488 0.90999 0.91564 0.92887 0.98831 0.97750 0.94938 0.92805 0.95403 0.90425 0.88889 0.72866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.58 10.16 71.24 0.72 -1.86 16 2 C 0.16 5.14 6.78 42.58 0.29 5.43 16 3 C -0.18 -5.07 9.71 22.32 0.22 -4.85 16 4 C -0.02 -0.66 7.55 22.72 0.17 -0.49 16 5 C -0.22 -7.29 4.94 -19.91 -0.10 -7.38 16 6 C 0.57 19.02 6.91 86.69 0.60 19.62 16 7 O -0.56 -21.97 16.16 -0.19 0.00 -21.97 16 8 N -0.59 -15.88 2.60 -824.04 -2.14 -18.02 16 9 C 0.11 2.30 6.40 86.36 0.55 2.85 16 10 C -0.12 -2.31 5.92 30.72 0.18 -2.12 16 11 C -0.10 -1.95 4.64 30.34 0.14 -1.81 16 12 C -0.07 -2.04 0.56 -51.84 -0.03 -2.07 16 13 C -0.12 -4.01 4.92 31.63 0.16 -3.86 16 14 C 0.20 9.28 4.95 86.77 0.43 9.71 16 15 N -0.62 -28.75 3.39 -692.76 -2.35 -31.09 16 16 C -0.23 -12.02 10.28 84.03 0.86 -11.16 16 17 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 18 C -0.06 -3.15 5.49 84.86 0.47 -2.68 16 19 N -0.95 -54.44 10.30 21.65 0.22 -54.22 16 20 Si 0.97 43.40 29.55 68.60 2.03 45.43 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.14 4.98 6.15 86.55 0.53 5.51 16 25 C 0.12 3.31 4.11 86.01 0.35 3.66 16 26 C 0.34 12.69 7.75 85.13 0.66 13.35 16 27 O -0.48 -17.19 12.74 -83.35 -1.06 -18.26 16 28 N -0.53 -19.70 10.28 -296.06 -3.04 -22.74 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.11 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.17 3.81 7.33 -2.91 -0.02 3.79 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.91 7.03 -2.38 -0.02 1.89 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.16 7.42 -2.39 -0.02 1.15 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 40 H 0.07 2.18 7.99 -2.39 -0.02 2.17 16 41 H 0.05 1.83 7.70 -2.39 -0.02 1.81 16 42 H -0.01 -0.36 7.50 -2.39 -0.02 -0.38 16 43 H 0.00 0.23 7.37 -2.38 -0.02 0.21 16 44 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.05 1.73 8.01 -2.39 -0.02 1.71 16 46 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 47 H 0.08 2.57 4.35 -2.39 -0.01 2.56 16 48 H 0.09 2.08 8.12 -2.39 -0.02 2.06 16 49 H 0.41 11.60 9.06 -74.05 -0.67 10.92 16 Total: -1.00 -73.83 384.52 0.16 -73.66 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.30 Total: 25.37 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.21 Total: 21.84 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -7.31 Total: -126.07 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.07 Total: -40.22 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.83 0.16 -73.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054203265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.260 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds