Wall clock time and date at job start Wed Apr 1 2020 03:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38605 * 119.54933 * 2 1 4 4 C 1.38578 * 119.35230 * 180.02562 * 3 2 1 5 5 C 1.38634 * 118.49001 * 0.02562 * 4 3 2 6 6 C 1.39268 * 119.05779 * 359.97438 * 5 4 3 7 7 C 1.48171 * 119.72277 * 180.02562 * 6 5 4 8 8 O 1.21513 * 119.99704 * 10.15886 * 7 6 5 9 9 N 1.34771 * 120.00036 * 190.15426 * 7 6 5 10 10 C 1.47165 * 121.08386 * 181.52782 * 9 7 6 11 11 C 1.53276 * 108.58153 * 231.20389 * 10 9 7 12 12 H 1.09002 * 109.51234 * 66.93109 * 11 10 9 13 13 C 1.52998 * 109.51360 * 187.03266 * 11 10 9 14 14 O 1.43121 * 109.22103 * 307.00767 * 11 10 9 15 15 C 1.41888 * 114.37559 * 60.88684 * 14 11 10 16 16 C 1.54373 * 110.71473 * 63.28970 * 15 14 11 17 17 C 1.54452 * 102.87762 * 83.69080 * 16 15 14 18 18 N 1.47086 * 107.29406 * 21.50264 * 17 16 15 19 19 C 1.36935 * 125.63268 * 180.97925 * 18 17 16 20 20 H 1.07994 * 120.00021 * 180.02562 * 19 18 17 21 21 C 1.38809 * 119.99688 * 0.02714 * 19 18 17 22 22 N 1.31617 * 120.00357 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47014 * 269.99647 * 23 21 19 25 25 H 1.48503 * 109.46985 * 29.99841 * 23 21 19 26 26 H 1.48496 * 109.47123 * 149.99997 * 23 21 19 27 27 C 1.47579 * 108.73875 * 1.24428 * 18 17 16 28 28 C 1.47339 * 121.08435 * 1.50992 * 9 7 6 29 29 N 1.31496 * 119.55245 * 180.29760 * 2 1 3 30 30 H 1.09000 * 109.47688 * 89.99539 * 1 2 3 31 31 H 1.09002 * 109.46908 * 210.00282 * 1 2 3 32 32 H 1.09007 * 109.46863 * 329.99788 * 1 2 3 33 33 H 1.08001 * 120.32481 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.76048 * 180.02562 * 4 3 2 35 35 H 1.07998 * 120.47407 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.61553 * 350.92917 * 10 9 7 37 37 H 1.08996 * 109.62067 * 111.28837 * 10 9 7 38 38 H 1.09001 * 109.47076 * 60.00398 * 13 11 10 39 39 H 1.08998 * 109.47193 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.47642 * 299.99885 * 13 11 10 41 41 H 1.09005 * 110.72713 * 325.34617 * 16 15 14 42 42 H 1.08996 * 110.72973 * 202.04718 * 16 15 14 43 43 H 1.08997 * 109.88020 * 262.07648 * 17 16 15 44 44 H 1.09004 * 109.87541 * 140.92200 * 17 16 15 45 45 H 0.97000 * 120.00350 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.37429 * 95.25525 * 27 18 17 47 47 H 1.08997 * 110.37733 * 217.59867 * 27 18 17 48 48 H 1.09003 * 109.67438 * 11.10897 * 28 9 7 49 49 H 1.09004 * 109.67083 * 250.57845 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5763 1.2010 -0.0005 5 6 4.2334 -0.0197 -0.0016 6 6 3.4821 -1.1923 -0.0016 7 6 4.1692 -2.5051 -0.0021 8 8 5.3688 -2.5630 0.1830 9 7 3.4637 -3.6349 -0.2078 10 6 4.1162 -4.9537 -0.1803 11 6 3.7347 -5.7141 -1.4552 12 1 4.1748 -5.2181 -2.3204 13 6 4.2561 -7.1499 -1.3693 14 8 2.3096 -5.7290 -1.5864 15 6 1.7179 -4.4439 -1.6938 16 6 2.1957 -3.7281 -2.9754 17 6 1.2484 -4.2912 -4.0576 18 7 0.0508 -4.7975 -3.3699 19 6 -1.0232 -5.3947 -3.9739 20 1 -1.8580 -5.7336 -3.3784 21 6 -1.0389 -5.5647 -5.3514 22 7 -0.0217 -5.1513 -6.0772 23 14 -2.5038 -6.3801 -6.1753 24 1 -2.2789 -7.8462 -6.2464 25 1 -3.7316 -6.1053 -5.3864 26 1 -2.6654 -5.8370 -7.5479 27 6 0.1951 -4.5497 -1.9223 28 6 2.0141 -3.5898 -0.4673 29 7 2.1556 -1.1439 -0.0059 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6485 2.1399 0.0004 34 1 4.1319 2.1272 -0.0001 35 1 5.3126 -0.0608 -0.0025 36 1 5.1980 -4.8260 -0.1401 37 1 3.7806 -5.5098 0.6951 38 1 3.8142 -7.6458 -0.5050 39 1 3.9840 -7.6902 -2.2760 40 1 5.3410 -7.1370 -1.2654 41 1 3.2315 -3.9853 -3.1975 42 1 2.0766 -2.6488 -2.8818 43 1 1.7392 -5.1034 -4.5936 44 1 0.9694 -3.5002 -4.7538 45 1 -0.0329 -5.2697 -7.0399 46 1 -0.2986 -3.6180 -1.6457 47 1 -0.2167 -5.3822 -1.3519 48 1 1.7064 -2.5609 -0.6535 49 1 1.4748 -3.9846 0.3938 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071134707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:34 Heat of formation + Delta-G solvation = 15.030003 kcal Electronic energy + Delta-G solvation = -32191.927956 eV Core-core repulsion = 28121.044405 eV Total energy + Delta-G solvation = -4070.883552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16804 -39.89690 -38.53564 -36.17719 -34.80185 -33.25409 -33.10555 -32.56322 -31.25356 -29.23611 -28.36331 -28.04306 -26.86493 -25.59351 -24.29587 -23.46995 -22.55617 -21.64194 -20.25324 -20.01231 -18.98387 -17.58315 -17.02362 -16.94887 -16.37375 -16.06650 -15.81489 -15.40401 -14.96531 -14.71593 -14.45725 -14.26215 -14.05473 -13.84673 -13.64764 -13.37932 -13.26288 -12.89869 -12.58614 -12.45669 -12.39397 -12.28092 -12.12757 -11.93286 -11.85856 -11.66043 -11.50136 -10.92601 -10.87184 -10.83255 -10.37478 -10.31815 -10.20082 -10.17786 -10.04306 -9.94968 -9.65372 -9.43338 -9.22543 -8.93264 -8.53195 -8.25229 -6.76137 -5.64391 -2.97184 0.43943 0.91985 2.60760 2.84397 3.44351 3.48951 3.50819 3.60318 3.77437 4.02512 4.35855 4.45095 4.54962 4.71336 4.78714 4.85849 5.02896 5.15476 5.18016 5.23596 5.30103 5.35414 5.39807 5.46599 5.53626 5.55796 5.65419 5.72019 5.76025 5.77632 5.81881 5.88796 5.93269 5.94664 6.12480 6.14218 6.19806 6.26841 6.39539 6.53668 6.55523 6.61700 6.72895 6.74205 7.32122 7.50911 7.60877 7.69049 7.81045 7.90081 8.06261 8.31527 9.28121 9.88437 10.54740 11.47551 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.003961 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.185092 B = 7067.174704 C = 8790.312364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.128 3.872 3 C -0.151 4.151 4 C -0.075 4.075 5 C -0.120 4.120 6 C 0.090 3.910 7 C 0.571 3.429 8 O -0.543 6.543 9 N -0.586 5.586 10 C 0.081 3.919 11 C 0.071 3.929 12 H 0.064 0.936 13 C -0.140 4.140 14 O -0.348 6.348 15 C 0.092 3.908 16 C -0.164 4.164 17 C 0.187 3.813 18 N -0.599 5.599 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.292 1.292 27 C 0.155 3.845 28 C 0.051 3.949 29 N -0.448 5.448 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.037 0.963 47 H 0.049 0.951 48 H 0.164 0.836 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 11.487 14.599 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.011 4.011 3 C -0.171 4.171 4 C -0.101 4.101 5 C -0.141 4.141 6 C -0.047 4.047 7 C 0.358 3.642 8 O -0.421 6.421 9 N -0.316 5.316 10 C -0.042 4.042 11 C 0.013 3.987 12 H 0.082 0.918 13 C -0.197 4.197 14 O -0.266 6.266 15 C 0.050 3.950 16 C -0.203 4.203 17 C 0.062 3.938 18 N -0.325 5.325 19 C -0.351 4.351 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.218 1.218 27 C 0.028 3.972 28 C -0.072 4.072 29 N -0.161 5.161 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.180 0.820 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.285 10.427 14.468 19.264 hybrid contribution -0.055 0.482 -0.577 0.754 sum 7.230 10.908 13.891 19.084 Atomic orbital electron populations 1.20822 0.87879 1.03912 1.04092 1.21587 0.97580 0.88111 0.93863 1.22187 0.94985 0.99459 1.00449 1.21629 0.94461 0.98245 0.95760 1.22050 1.02190 0.91661 0.98179 1.21120 0.89663 0.94092 0.99806 1.17871 0.85954 0.83070 0.77272 1.90751 1.13707 1.86435 1.51196 1.48041 1.10220 1.05374 1.67960 1.22442 0.99570 0.82916 0.99260 1.22412 0.83690 0.96861 0.95760 0.91847 1.21675 1.00164 0.94363 1.03535 1.87884 1.17906 1.27434 1.93418 1.22503 0.96204 0.83195 0.93067 1.23330 1.00263 0.99108 0.97595 1.21072 0.85129 0.97092 0.90470 1.44422 1.18701 1.69782 0.99623 1.19050 0.95019 1.30959 0.90084 0.90406 1.24775 0.98067 1.01454 0.96180 1.69970 1.30204 1.51915 1.04994 0.86130 0.81836 0.79077 0.78792 1.21681 1.20711 1.21797 1.21348 0.89119 0.98576 0.88121 1.23762 0.78469 1.07291 0.97648 1.67351 1.08341 1.28075 1.12318 0.89472 0.89873 0.90430 0.84168 0.83974 0.83479 0.88530 0.90636 0.91814 0.91108 0.91292 0.92217 0.92250 0.93597 0.94141 0.93890 0.94573 0.93301 0.82011 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.17 36.01 0.37 -0.53 16 2 C 0.13 1.32 6.78 -82.60 -0.56 0.76 16 3 C -0.15 -1.24 9.75 -39.32 -0.38 -1.62 16 4 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 5 C -0.12 -1.33 9.63 -39.05 -0.38 -1.71 16 6 C 0.09 1.23 6.63 -83.01 -0.55 0.68 16 7 C 0.57 8.99 7.69 -12.18 -0.09 8.90 16 8 O -0.54 -9.41 15.84 5.35 0.08 -9.33 16 9 N -0.59 -9.11 2.95 -173.68 -0.51 -9.63 16 10 C 0.08 1.17 5.91 -3.54 -0.02 1.15 16 11 C 0.07 1.13 3.19 -26.59 -0.08 1.05 16 12 H 0.06 1.08 6.23 -51.93 -0.32 0.76 16 13 C -0.14 -1.82 9.57 37.16 0.36 -1.47 16 14 O -0.35 -6.79 9.94 -35.22 -0.35 -7.14 16 15 C 0.09 1.73 0.84 -89.52 -0.08 1.65 16 16 C -0.16 -3.33 5.86 -25.25 -0.15 -3.48 16 17 C 0.19 4.74 5.38 -2.96 -0.02 4.72 16 18 N -0.60 -15.63 3.40 -170.17 -0.58 -16.21 16 19 C -0.22 -6.30 10.28 -15.06 -0.15 -6.45 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -27.64 10.31 55.49 0.57 -27.06 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.16 3.29 6.43 -2.74 -0.02 3.27 16 28 C 0.05 0.80 4.82 -3.91 -0.02 0.79 16 29 N -0.45 -5.80 5.95 -6.06 -0.04 -5.84 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.43 8.08 -51.92 -0.42 0.01 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.53 7.68 -52.49 -0.40 1.13 16 36 H 0.10 1.35 7.07 -51.93 -0.37 0.98 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.18 6.07 -51.93 -0.32 0.87 16 42 H 0.06 1.14 7.82 -51.93 -0.41 0.74 16 43 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 44 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.04 0.72 8.00 -51.93 -0.42 0.30 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.16 2.52 3.69 -88.77 -0.33 2.19 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -34.13 384.77 -9.84 -43.97 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.52 Total: 1.73 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.27 Total: 6.33 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.55 Total: -58.74 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.27 Total: -16.46 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.13 -9.84 -43.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071134707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.000 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds