Wall clock time and date at job start Wed Apr 1 2020 03:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.45670 * 2 1 4 4 C 1.38355 * 119.30239 * 179.97438 * 3 2 1 5 5 C 1.40028 * 118.28852 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.55871 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99978 * 330.63395 * 6 5 4 8 8 N 1.34778 * 120.00050 * 150.63680 * 6 5 4 9 9 C 1.47165 * 121.07599 * 173.87529 * 8 6 5 10 10 C 1.53275 * 108.56763 * 128.76559 * 9 8 6 11 11 H 1.08999 * 109.51213 * 293.00116 * 10 9 8 12 12 C 1.53001 * 109.50908 * 172.90524 * 10 9 8 13 13 O 1.43128 * 109.23356 * 52.97792 * 10 9 8 14 14 C 1.41880 * 114.36374 * 299.10573 * 13 10 9 15 15 C 1.54368 * 110.71511 * 296.73810 * 14 13 10 16 16 C 1.54461 * 102.86915 * 276.29919 * 15 14 13 17 17 N 1.47091 * 107.29362 * 338.49950 * 16 15 14 18 18 C 1.36941 * 125.62788 * 179.01508 * 17 16 15 19 19 H 1.07996 * 120.00042 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99758 * 0.03489 * 18 17 16 21 21 N 1.31617 * 120.00136 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99824 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47389 * 59.99379 * 22 20 18 24 24 H 1.48502 * 109.47334 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47109 * 299.99263 * 22 20 18 26 26 C 1.47575 * 108.74158 * 359.02332 * 17 16 15 27 27 C 1.47335 * 121.07534 * 353.85444 * 8 6 5 28 28 C 1.39522 * 118.88095 * 0.25154 * 5 4 3 29 29 N 1.31695 * 120.56793 * 359.45504 * 28 5 4 30 30 H 1.09003 * 109.47139 * 90.00758 * 1 2 3 31 31 H 1.09001 * 109.47095 * 210.00249 * 1 2 3 32 32 H 1.08993 * 109.47569 * 330.00655 * 1 2 3 33 33 H 1.07994 * 120.34766 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.85823 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.62127 * 9.03623 * 9 8 6 36 36 H 1.09006 * 109.76979 * 248.58101 * 9 8 6 37 37 H 1.09001 * 109.47384 * 59.99775 * 12 10 9 38 38 H 1.09000 * 109.46799 * 299.99917 * 12 10 9 39 39 H 1.09002 * 109.47188 * 179.97438 * 12 10 9 40 40 H 1.08997 * 110.73725 * 34.64701 * 15 14 13 41 41 H 1.09008 * 110.73469 * 157.96040 * 15 14 13 42 42 H 1.08999 * 109.87608 * 97.92175 * 16 15 14 43 43 H 1.08998 * 109.88277 * 219.07919 * 16 15 14 44 44 H 0.97000 * 119.99790 * 180.02562 * 21 20 18 45 45 H 1.09005 * 110.37196 * 264.47181 * 26 17 16 46 46 H 1.08997 * 110.37552 * 142.12610 * 26 17 16 47 47 H 1.09000 * 109.67971 * 348.93176 * 27 8 6 48 48 H 1.08994 * 109.67606 * 109.47773 * 27 8 6 49 49 H 1.08003 * 119.71431 * 179.75041 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2010 0.0005 5 6 4.2312 -0.0338 0.0016 6 6 5.7083 -0.0964 0.0017 7 8 6.3543 0.7940 -0.5153 8 7 6.3385 -1.1407 0.5749 9 6 7.7985 -1.2959 0.4731 10 6 8.3656 -1.5117 1.8806 11 1 8.2364 -0.6030 2.4685 12 6 9.8545 -1.8511 1.7851 13 8 7.6684 -2.5921 2.5094 14 6 6.2751 -2.3763 2.6675 15 6 6.0109 -1.1764 3.6021 16 6 6.1061 -1.8082 5.0083 17 7 5.8764 -3.2529 4.8551 18 6 5.8966 -4.1756 5.8668 19 1 5.7154 -5.2181 5.6506 20 6 6.1497 -3.7709 7.1703 21 7 6.3709 -2.5004 7.4337 22 14 6.1765 -5.0293 8.5504 23 1 7.2292 -6.0407 8.2779 24 1 6.4674 -4.3470 9.8369 25 1 4.8546 -5.7008 8.6337 26 6 5.6209 -3.5440 3.4311 27 6 5.5883 -2.1637 1.3241 28 6 3.4716 -1.2042 -0.0033 29 7 2.1559 -1.1487 0.0020 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6442 2.1381 0.0004 34 1 4.1274 2.1266 0.0001 35 1 8.2327 -0.3960 0.0375 36 1 8.0350 -2.1563 -0.1528 37 1 10.3841 -1.0298 1.3023 38 1 9.9828 -2.7608 1.1986 39 1 10.2573 -2.0040 2.7863 40 1 6.7745 -0.4097 3.4710 41 1 5.0161 -0.7652 3.4304 42 1 7.0971 -1.6328 5.4271 43 1 5.3449 -1.3790 5.6598 44 1 6.5481 -2.2177 8.3445 45 1 4.5488 -3.5719 3.2359 46 1 6.0837 -4.4893 3.1479 47 1 4.5650 -1.8243 1.4847 48 1 5.5818 -3.0983 0.7632 49 1 3.9670 -2.1639 -0.0066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071139514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:57 Heat of formation + Delta-G solvation = -13.097583 kcal Electronic energy + Delta-G solvation = -31821.486791 eV Core-core repulsion = 27749.383536 eV Total energy + Delta-G solvation = -4072.103255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30795 -41.09070 -39.85493 -37.89315 -36.19529 -34.82890 -34.06949 -33.43547 -32.91981 -31.11859 -30.06980 -29.48954 -27.57757 -27.05885 -25.75924 -24.63404 -23.70762 -23.02909 -22.04472 -21.31300 -20.43957 -18.96970 -18.82042 -18.38482 -17.34124 -17.24068 -16.99189 -16.76811 -16.44780 -16.04170 -15.79814 -15.68240 -15.29744 -15.13587 -15.05320 -14.61272 -14.27873 -14.20814 -14.04091 -13.83596 -13.61711 -13.37791 -13.21260 -13.13981 -13.04606 -12.98532 -12.83316 -12.80539 -12.73365 -12.28502 -12.09144 -12.05444 -11.86325 -11.78687 -11.64546 -11.18608 -11.00877 -10.93029 -10.69209 -10.51095 -10.01027 -9.61604 -8.90419 -7.83793 -5.19292 -0.41546 0.15451 1.46316 1.49985 1.50876 1.56200 1.70404 2.49763 2.56204 2.69472 3.07026 3.28813 3.36785 3.44788 3.58178 3.67900 3.73217 3.79144 3.81272 3.92413 3.95419 4.03544 4.14018 4.24244 4.30118 4.35795 4.45724 4.50111 4.59265 4.67668 4.70532 4.71759 4.77584 4.81401 4.81829 4.92407 4.95045 5.04134 5.04645 5.06523 5.15165 5.16931 5.29977 5.44095 5.56970 5.58429 5.70417 6.08088 6.17769 6.34260 6.79505 6.87631 7.09316 7.76549 8.40848 9.26939 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003713 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.961320 B = 7538.625404 C = 9396.868853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.140 3.860 3 C -0.172 4.172 4 C -0.025 4.025 5 C -0.211 4.211 6 C 0.572 3.428 7 O -0.568 6.568 8 N -0.603 5.603 9 C 0.090 3.910 10 C 0.066 3.934 11 H 0.046 0.954 12 C -0.135 4.135 13 O -0.367 6.367 14 C 0.104 3.896 15 C -0.151 4.151 16 C 0.199 3.801 17 N -0.620 5.620 18 C -0.239 4.239 19 H 0.087 0.913 20 C -0.067 4.067 21 N -0.954 5.954 22 Si 0.979 3.021 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.274 1.274 26 C 0.147 3.853 27 C 0.086 3.914 28 C 0.128 3.872 29 N -0.506 5.506 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.004 0.996 43 H 0.006 0.994 44 H 0.245 0.755 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 6.143 -19.619 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.003 3.997 3 C -0.191 4.191 4 C -0.051 4.051 5 C -0.216 4.216 6 C 0.361 3.639 7 O -0.448 6.448 8 N -0.334 5.334 9 C -0.032 4.032 10 C 0.008 3.992 11 H 0.064 0.936 12 C -0.192 4.192 13 O -0.286 6.286 14 C 0.063 3.937 15 C -0.189 4.189 16 C 0.074 3.926 17 N -0.346 5.346 18 C -0.368 4.368 19 H 0.105 0.895 20 C -0.260 4.260 21 N -0.603 5.603 22 Si 0.807 3.193 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.200 1.200 26 C 0.021 3.979 27 C -0.036 4.036 28 C -0.029 4.029 29 N -0.216 5.216 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.193 0.807 34 H 0.166 0.834 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.129 0.871 48 H 0.129 0.871 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.504 5.654 -19.614 21.424 hybrid contribution 0.831 0.596 1.365 1.705 sum -5.674 6.250 -18.249 20.107 Atomic orbital electron populations 1.20907 0.86143 1.04816 1.04513 1.22192 0.99007 0.88148 0.90320 1.22294 0.93711 1.00809 1.02309 1.21881 0.95162 0.97317 0.90739 1.20853 0.93344 0.96817 1.10605 1.18285 0.87478 0.80619 0.77478 1.90737 1.67980 1.38192 1.47888 1.48060 1.08413 1.24614 1.52347 1.22423 0.78797 1.04548 0.97439 1.22642 0.94315 0.90267 0.91994 0.93576 1.21690 0.90893 1.03747 1.02908 1.87895 1.19014 1.41445 1.80257 1.22205 0.82481 0.95921 0.93120 1.23179 1.01318 0.97733 0.96707 1.20729 0.96948 0.83403 0.91534 1.44678 1.83475 1.03737 1.02739 1.19455 1.40729 0.89826 0.86795 0.89528 1.25654 1.02339 0.98197 0.99781 1.70196 1.55976 1.15438 1.18735 0.85140 0.78270 0.77859 0.77996 1.20358 1.22300 1.19959 1.21567 0.97232 0.95669 0.83393 1.22820 0.96626 0.92836 0.91366 1.23566 0.89560 0.98231 0.91588 1.67676 1.09383 1.30267 1.14286 0.88488 0.90601 0.88159 0.80718 0.83360 0.87974 0.88332 0.88535 0.90533 0.92888 0.91610 0.90784 0.97813 0.97574 0.94591 0.92513 0.92646 0.87092 0.87124 0.80339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.16 71.23 0.72 -0.47 16 2 C 0.14 2.54 6.78 42.57 0.29 2.83 16 3 C -0.17 -2.76 9.72 22.33 0.22 -2.55 16 4 C -0.02 -0.51 9.73 22.73 0.22 -0.29 16 5 C -0.21 -5.04 5.45 -19.99 -0.11 -5.15 16 6 C 0.57 15.64 7.48 86.78 0.65 16.29 16 7 O -0.57 -18.44 16.24 -3.87 -0.06 -18.50 16 8 N -0.60 -15.32 2.95 -822.08 -2.42 -17.74 16 9 C 0.09 2.14 5.92 86.34 0.51 2.65 16 10 C 0.07 1.86 3.19 30.69 0.10 1.96 16 11 H 0.05 1.47 6.23 -2.39 -0.01 1.46 16 12 C -0.13 -3.08 9.57 71.98 0.69 -2.39 16 13 O -0.37 -12.98 9.93 -148.95 -1.48 -14.46 16 14 C 0.10 3.53 0.84 -10.17 -0.01 3.52 16 15 C -0.15 -5.84 5.87 31.56 0.19 -5.65 16 16 C 0.20 10.25 5.38 86.76 0.47 10.71 16 17 N -0.62 -32.22 3.40 -692.76 -2.36 -34.58 16 18 C -0.24 -13.53 10.28 84.03 0.86 -12.67 16 19 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 20 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 21 N -0.95 -58.81 10.31 21.65 0.22 -58.59 16 22 Si 0.98 46.34 29.55 68.60 2.03 48.36 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.15 5.81 6.42 86.54 0.56 6.36 16 27 C 0.09 2.15 3.52 86.01 0.30 2.45 16 28 C 0.13 2.85 8.62 85.02 0.73 3.59 16 29 N -0.51 -11.42 10.25 -182.81 -1.87 -13.29 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.68 8.07 -2.39 -0.02 0.66 16 33 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.15 2.85 7.98 -2.91 -0.02 2.83 16 35 H 0.10 2.43 7.06 -2.39 -0.02 2.41 16 36 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 2.51 6.07 -2.39 -0.01 2.49 16 41 H 0.07 2.65 7.83 -2.38 -0.02 2.63 16 42 H 0.00 0.21 7.39 -2.39 -0.02 0.20 16 43 H 0.01 0.35 7.50 -2.39 -0.02 0.33 16 44 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.06 2.04 8.00 -2.38 -0.02 2.02 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.11 2.67 4.31 -2.39 -0.01 2.66 16 48 H 0.11 2.21 7.87 -2.39 -0.02 2.19 16 49 H 0.18 3.41 5.40 -2.91 -0.02 3.39 16 Total: -1.00 -76.22 383.28 1.87 -74.35 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.96 Total: 16.68 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 6.85 Total: 17.76 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -6.43 Total: -124.20 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.54 Total: -32.96 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -76.22 1.87 -74.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071139514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.256 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds