Wall clock time and date at job start Wed Apr 1 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31697 * 119.71697 * 2 1 4 4 C 1.31922 * 121.88078 * 180.23997 * 3 2 1 5 5 C 1.38353 * 121.08178 * 359.77785 * 4 3 2 6 6 C 1.38366 * 119.30154 * 359.96824 * 5 4 3 7 7 C 1.39526 * 119.72087 * 179.75056 * 2 1 3 8 8 C 1.47840 * 120.55270 * 0.02562 * 7 2 1 9 9 O 1.21551 * 120.00641 * 306.18322 * 8 7 2 10 10 N 1.34786 * 119.99703 * 126.18738 * 8 7 2 11 11 C 1.47159 * 121.07221 * 354.16962 * 10 8 7 12 12 C 1.53278 * 108.55353 * 231.24126 * 11 10 8 13 13 H 1.09001 * 109.51040 * 66.93706 * 12 11 10 14 14 C 1.53003 * 109.50743 * 187.07627 * 12 11 10 15 15 O 1.43115 * 109.23414 * 307.00765 * 12 11 10 16 16 C 1.41880 * 114.36732 * 60.90812 * 15 12 11 17 17 C 1.54357 * 110.75365 * 176.66300 * 16 15 12 18 18 C 1.54473 * 102.94044 * 276.12953 * 17 16 15 19 19 N 1.47078 * 107.29392 * 338.84313 * 18 17 16 20 20 C 1.36937 * 125.63215 * 178.90014 * 19 18 17 21 21 H 1.07999 * 120.00581 * 179.69458 * 20 19 18 22 22 C 1.38819 * 119.99445 * 359.69828 * 20 19 18 23 23 N 1.31614 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99778 * 180.27337 * 22 20 19 25 25 H 1.48499 * 109.47021 * 179.72373 * 24 22 20 26 26 H 1.48493 * 109.47281 * 299.72562 * 24 22 20 27 27 H 1.48500 * 109.46896 * 59.72357 * 24 22 20 28 28 C 1.47577 * 108.74429 * 358.64252 * 19 18 17 29 29 C 1.47328 * 121.07022 * 174.19192 * 10 8 7 30 30 H 1.09002 * 109.47313 * 275.06190 * 1 2 3 31 31 H 1.08993 * 109.47039 * 35.07129 * 1 2 3 32 32 H 1.09008 * 109.47033 * 155.06971 * 1 2 3 33 33 H 1.07998 * 119.46086 * 179.74224 * 4 3 2 34 34 H 1.08003 * 120.35183 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.85362 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.62107 * 111.52607 * 11 10 8 37 37 H 1.09005 * 109.62718 * 350.96638 * 11 10 8 38 38 H 1.09007 * 109.46623 * 179.75657 * 14 12 11 39 39 H 1.08994 * 109.47494 * 299.75721 * 14 12 11 40 40 H 1.08996 * 109.47349 * 59.76542 * 14 12 11 41 41 H 1.08998 * 110.73507 * 34.66766 * 17 16 15 42 42 H 1.09001 * 110.73060 * 157.98007 * 17 16 15 43 43 H 1.09006 * 109.98497 * 219.36621 * 18 17 16 44 44 H 1.08995 * 109.77273 * 98.21552 * 18 17 16 45 45 H 0.96996 * 119.99967 * 179.97438 * 23 22 20 46 46 H 1.09001 * 110.38031 * 142.37460 * 28 19 18 47 47 H 1.08995 * 110.37715 * 264.61708 * 28 19 18 48 48 H 1.08998 * 109.67851 * 11.07198 * 29 10 8 49 49 H 1.08996 * 109.67777 * 250.52696 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0047 5 6 4.2366 0.0365 -0.0053 6 6 3.5987 -1.1913 -0.0002 7 6 2.1987 -1.2117 0.0053 8 6 1.4656 -2.4955 0.0103 9 8 0.6242 -2.7118 0.8604 10 7 1.7304 -3.4264 -0.9279 11 6 2.6499 -3.1425 -2.0412 12 6 1.9520 -3.5088 -3.3558 13 1 1.1142 -2.8321 -3.5240 14 6 2.9464 -3.3900 -4.5125 15 8 1.4710 -4.8543 -3.2752 16 6 0.5230 -5.0762 -2.2431 17 6 -0.0003 -6.5278 -2.2840 18 6 -1.1251 -6.4603 -3.3407 19 7 -1.5421 -5.0539 -3.4463 20 6 -2.5040 -4.5682 -4.2912 21 1 -2.7422 -3.5148 -4.2899 22 6 -3.1732 -5.4301 -5.1494 23 7 -2.8826 -6.7138 -5.1514 24 14 -4.4801 -4.7665 -6.3075 25 1 -5.0354 -5.8804 -7.1175 26 1 -5.5690 -4.1384 -5.5172 27 1 -3.8746 -3.7532 -7.2086 28 6 -0.7570 -4.2532 -2.4868 29 6 1.1080 -4.7606 -0.8721 30 1 -0.3634 0.0907 1.0237 31 1 -0.3633 0.8410 -0.5905 32 1 -0.3633 -0.9320 -0.4332 33 1 3.9734 2.1533 -0.0087 34 1 5.3152 0.0910 -0.0095 35 1 4.1661 -2.1102 -0.0009 36 1 3.5555 -3.7388 -1.9290 37 1 2.9044 -2.0826 -2.0447 38 1 2.4505 -3.6548 -5.4465 39 1 3.3122 -2.3651 -4.5733 40 1 3.7845 -4.0655 -4.3421 41 1 0.7869 -7.2131 -2.5981 42 1 -0.4037 -6.8200 -1.3144 43 1 -1.9690 -7.0744 -3.0262 44 1 -0.7487 -6.8086 -4.3025 45 1 -3.3504 -7.3160 -5.7508 46 1 -0.5083 -3.2827 -2.9163 47 1 -1.3108 -4.1251 -1.5568 48 1 0.3146 -4.7645 -0.1248 49 1 1.8602 -5.5059 -0.6136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071202319.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:06 Heat of formation + Delta-G solvation = -0.289525 kcal Electronic energy + Delta-G solvation = -32113.564451 eV Core-core repulsion = 28042.016595 eV Total energy + Delta-G solvation = -4071.547856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21166 -40.06134 -38.52499 -36.38188 -34.75220 -33.33877 -33.23358 -32.59024 -31.32910 -29.46841 -28.60736 -27.78608 -26.58413 -25.89325 -24.57650 -23.51163 -22.41677 -21.87394 -20.33552 -20.00870 -19.02067 -17.64698 -17.15105 -16.96301 -16.62349 -16.52341 -16.08938 -15.12672 -14.86723 -14.68164 -14.54700 -14.43150 -14.06635 -13.83146 -13.62438 -13.51405 -13.41971 -12.96943 -12.68768 -12.55463 -12.36568 -12.29223 -12.19769 -12.12762 -11.97929 -11.75528 -11.55102 -11.05884 -10.86707 -10.83876 -10.47432 -10.38137 -10.22211 -10.13948 -10.10093 -9.98294 -9.67032 -9.62924 -9.56250 -9.24356 -8.55876 -8.41671 -6.78954 -5.67755 -3.00576 0.50574 0.86287 2.46867 2.75222 3.42635 3.42666 3.46711 3.47981 3.84754 3.94793 4.20201 4.39849 4.45956 4.51164 4.63184 4.72835 4.85720 5.00219 5.02834 5.13020 5.18557 5.23917 5.34063 5.40266 5.44893 5.50216 5.55873 5.58160 5.59910 5.66548 5.70095 5.80333 5.84646 5.86864 5.94056 6.03309 6.15808 6.17924 6.25419 6.30780 6.41393 6.48423 6.60847 6.64939 7.18969 7.55760 7.61654 7.63605 7.69650 7.85946 7.96015 8.28842 9.25041 9.84860 10.50862 11.44015 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.003386 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.661620 B = 8268.102700 C = 8776.103757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.180 3.820 3 N -0.486 5.486 4 C 0.120 3.880 5 C -0.186 4.186 6 C -0.042 4.042 7 C -0.178 4.178 8 C 0.568 3.432 9 O -0.523 6.523 10 N -0.604 5.604 11 C 0.078 3.922 12 C 0.071 3.929 13 H 0.068 0.932 14 C -0.140 4.140 15 O -0.345 6.345 16 C 0.092 3.908 17 C -0.129 4.129 18 C 0.183 3.817 19 N -0.598 5.598 20 C -0.227 4.227 21 H 0.075 0.925 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.121 3.879 29 C 0.097 3.903 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.026 0.974 48 H 0.104 0.896 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.036 10.358 9.188 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.042 3.958 3 N -0.195 5.195 4 C -0.037 4.037 5 C -0.205 4.205 6 C -0.068 4.068 7 C -0.183 4.183 8 C 0.355 3.645 9 O -0.400 6.400 10 N -0.337 5.337 11 C -0.046 4.046 12 C 0.012 3.988 13 H 0.086 0.914 14 C -0.198 4.198 15 O -0.264 6.264 16 C 0.050 3.950 17 C -0.168 4.168 18 C 0.058 3.942 19 N -0.325 5.325 20 C -0.355 4.355 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.212 1.212 28 C -0.005 4.005 29 C -0.025 4.025 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.043 0.957 48 H 0.123 0.877 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.999 10.764 9.350 22.187 hybrid contribution -0.047 -0.237 -0.488 0.545 sum 16.951 10.527 8.862 21.834 Atomic orbital electron populations 1.20832 0.87791 1.03958 1.04035 1.21432 0.97379 0.86555 0.90403 1.67613 1.10029 1.28512 1.13325 1.22964 0.89375 0.98783 0.92579 1.22067 1.01756 0.92961 1.03764 1.21719 0.92707 0.99118 0.93239 1.20784 0.94795 0.94921 1.07782 1.18061 0.82182 0.82849 0.81409 1.90812 1.32502 1.78917 1.37731 1.48134 1.46062 1.14033 1.25517 1.22628 0.92962 1.02104 0.86873 1.22425 0.96586 0.86363 0.93392 0.91370 1.21680 0.98456 1.01646 0.97989 1.87851 1.58958 1.26397 1.53207 1.22332 0.88896 0.98480 0.85262 1.22848 0.99926 0.92520 1.01518 1.21159 0.92146 0.85946 0.94920 1.44402 1.42501 1.03039 1.42518 1.18969 1.10874 0.92994 1.12712 0.90743 1.24769 1.00066 0.95613 0.99806 1.69941 1.44139 1.01975 1.40790 0.86214 0.81473 0.77493 0.80670 1.21570 1.21197 1.21233 1.21924 0.90347 0.94440 0.93831 1.22257 0.98864 0.82114 0.99249 0.89375 0.90074 0.90200 0.82240 0.84093 0.84293 0.90436 0.89344 0.90883 0.91368 0.91828 0.90833 0.90859 0.93831 0.93127 0.93726 0.94429 0.95653 0.87750 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.45 36.00 0.34 -1.02 16 2 C 0.18 2.27 6.82 -82.17 -0.56 1.71 16 3 N -0.49 -5.65 10.26 -9.15 -0.09 -5.75 16 4 C 0.12 1.02 11.17 -17.47 -0.20 0.82 16 5 C -0.19 -1.34 10.10 -39.49 -0.40 -1.74 16 6 C -0.04 -0.37 8.00 -38.87 -0.31 -0.68 16 7 C -0.18 -2.15 4.62 -104.82 -0.48 -2.63 16 8 C 0.57 8.18 6.13 -12.33 -0.08 8.10 16 9 O -0.52 -9.13 15.44 5.32 0.08 -9.05 16 10 N -0.60 -8.22 2.95 -173.81 -0.51 -8.74 16 11 C 0.08 0.88 5.03 -3.54 -0.02 0.86 16 12 C 0.07 1.01 3.20 -26.59 -0.08 0.92 16 13 H 0.07 1.11 6.25 -51.93 -0.32 0.79 16 14 C -0.14 -1.60 9.57 37.16 0.36 -1.24 16 15 O -0.35 -6.16 9.92 -35.22 -0.35 -6.51 16 16 C 0.09 1.64 0.83 -89.65 -0.07 1.56 16 17 C -0.13 -2.42 6.12 -25.25 -0.15 -2.58 16 18 C 0.18 4.50 5.39 -2.95 -0.02 4.48 16 19 N -0.60 -15.61 3.40 -170.31 -0.58 -16.19 16 20 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 21 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 24 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.12 2.61 6.18 -2.87 -0.02 2.59 16 29 C 0.10 1.45 5.32 -3.91 -0.02 1.43 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.12 6.56 -51.92 -0.34 0.78 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.14 0.99 7.80 -52.49 -0.41 0.58 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.87 5.57 -51.93 -0.29 0.58 16 38 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.23 8.00 -51.93 -0.42 0.82 16 43 H 0.04 1.17 7.52 -51.93 -0.39 0.78 16 44 H 0.05 1.39 7.37 -51.93 -0.38 1.01 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.04 0.82 6.09 -51.93 -0.32 0.50 16 47 H 0.03 0.57 7.82 -51.93 -0.41 0.16 16 48 H 0.10 1.67 6.83 -51.93 -0.35 1.32 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -34.13 384.04 -9.49 -43.62 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.40 Total: 0.44 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.97 Total: 5.71 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.61 Total: -57.39 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.27 Total: -15.56 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.13 -9.49 -43.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202319.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.331 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds