Wall clock time and date at job start Wed Apr 1 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31694 * 119.71532 * 2 1 4 4 C 1.31929 * 121.88182 * 179.97438 * 3 2 1 5 5 C 1.38354 * 121.07892 * 359.97438 * 4 3 2 6 6 C 1.38357 * 119.30292 * 359.70230 * 5 4 3 7 7 C 1.39519 * 119.72091 * 179.97438 * 2 1 3 8 8 C 1.47837 * 120.55702 * 359.97438 * 7 2 1 9 9 O 1.21554 * 120.00339 * 306.73107 * 8 7 2 10 10 N 1.34781 * 120.00352 * 126.72512 * 8 7 2 11 11 C 1.47169 * 121.06997 * 354.15821 * 10 8 7 12 12 C 1.53273 * 108.55770 * 231.24537 * 11 10 8 13 13 H 1.09002 * 109.51019 * 66.94339 * 12 11 10 14 14 C 1.53003 * 109.50897 * 187.03474 * 12 11 10 15 15 O 1.43120 * 109.23169 * 307.00890 * 12 11 10 16 16 C 1.41892 * 114.36025 * 60.90613 * 15 12 11 17 17 C 1.54380 * 110.71990 * 63.26713 * 16 15 12 18 18 C 1.54465 * 102.86338 * 83.69669 * 17 16 15 19 19 N 1.47089 * 107.29875 * 21.49868 * 18 17 16 20 20 C 1.36932 * 125.62650 * 180.97956 * 19 18 17 21 21 H 1.08002 * 120.00367 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00184 * 0.02562 * 20 19 18 23 23 N 1.31625 * 120.00020 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00088 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46946 * 180.02562 * 24 22 20 26 26 H 1.48493 * 109.47010 * 300.00453 * 24 22 20 27 27 H 1.48500 * 109.46764 * 60.00506 * 24 22 20 28 28 C 1.47575 * 108.74195 * 1.24433 * 19 18 17 29 29 C 1.47331 * 121.07962 * 174.17832 * 10 8 7 30 30 H 1.09007 * 109.47093 * 274.83507 * 1 2 3 31 31 H 1.08997 * 109.47175 * 34.83826 * 1 2 3 32 32 H 1.08997 * 109.47285 * 154.83973 * 1 2 3 33 33 H 1.07999 * 119.46541 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.35321 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.86111 * 180.29190 * 6 5 4 36 36 H 1.08997 * 109.62230 * 350.96841 * 11 10 8 37 37 H 1.08999 * 109.61940 * 111.33377 * 11 10 8 38 38 H 1.08999 * 109.47306 * 60.00044 * 14 12 11 39 39 H 1.09003 * 109.47153 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47147 * 299.99861 * 14 12 11 41 41 H 1.08991 * 110.73393 * 325.35271 * 17 16 15 42 42 H 1.09005 * 110.73486 * 202.03814 * 17 16 15 43 43 H 1.08999 * 109.87838 * 262.07623 * 18 17 16 44 44 H 1.08994 * 109.87653 * 140.92488 * 18 17 16 45 45 H 0.97002 * 119.99728 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.37801 * 95.26051 * 28 19 18 47 47 H 1.09003 * 110.37039 * 217.61134 * 28 19 18 48 48 H 1.09004 * 109.67661 * 11.05546 * 29 10 8 49 49 H 1.08996 * 109.68091 * 250.51106 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2366 0.0365 0.0016 6 6 3.5987 -1.1912 0.0084 7 6 2.1986 -1.2117 0.0005 8 6 1.4657 -2.4955 0.0017 9 8 0.6179 -2.7107 0.8458 10 7 1.7373 -3.4275 -0.9333 11 6 2.6649 -3.1449 -2.0404 12 6 1.9766 -3.5129 -3.3595 13 1 1.1400 -2.8364 -3.5347 14 6 2.9790 -3.3943 -4.5093 15 8 1.4951 -4.8584 -3.2807 16 6 0.5397 -5.0790 -2.2551 17 6 -0.7361 -4.2476 -2.5091 18 6 -1.5349 -5.1343 -3.4896 19 7 -1.0382 -6.5106 -3.3387 20 6 -1.4756 -7.5985 -4.0459 21 1 -1.0457 -8.5717 -3.8603 22 6 -2.4717 -7.4506 -5.0013 23 7 -2.9954 -6.2644 -5.2279 24 14 -3.0680 -8.9347 -5.9665 25 1 -4.1276 -8.5133 -6.9178 26 1 -1.9323 -9.5237 -6.7203 27 1 -3.6177 -9.9465 -5.0289 28 6 0.0050 -6.5264 -2.2949 29 6 1.1149 -4.7619 -0.8804 30 1 -0.3634 0.0866 1.0241 31 1 -0.3633 0.8434 -0.5870 32 1 -0.3634 -0.9301 -0.4369 33 1 3.9734 2.1533 0.0009 34 1 5.3152 0.0910 0.0016 35 1 4.1661 -2.1102 0.0141 36 1 2.9191 -2.0850 -2.0434 37 1 3.5711 -3.7383 -1.9191 38 1 3.8144 -4.0721 -4.3344 39 1 2.4887 -3.6556 -5.4472 40 1 3.3477 -2.3700 -4.5657 41 1 -0.4881 -3.2908 -2.9685 42 1 -1.2912 -4.0997 -1.5827 43 1 -1.3753 -4.7928 -4.5123 44 1 -2.5963 -5.0945 -3.2448 45 1 -3.6911 -6.1611 -5.8958 46 1 -0.4256 -6.8014 -1.3321 47 1 0.8028 -7.2177 -2.5663 48 1 0.3163 -4.7652 -0.1386 49 1 1.8654 -5.5067 -0.6159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071202320.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:10 Heat of formation + Delta-G solvation = 0.285856 kcal Electronic energy + Delta-G solvation = -31921.688822 eV Core-core repulsion = 27850.165916 eV Total energy + Delta-G solvation = -4071.522906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.24462 -40.08860 -38.55195 -36.41068 -34.78222 -33.35138 -33.22748 -32.59293 -31.35600 -29.41651 -28.67203 -27.94121 -26.60326 -25.90047 -24.50891 -23.48649 -22.46484 -21.90509 -20.29968 -20.10262 -19.05326 -17.65281 -17.17737 -17.01782 -16.66810 -16.55450 -16.05080 -15.18574 -14.89621 -14.72276 -14.56880 -14.35556 -14.15112 -13.85461 -13.60445 -13.55389 -13.38712 -12.96621 -12.72214 -12.58392 -12.42177 -12.31053 -12.24869 -12.16879 -11.98794 -11.86112 -11.61859 -11.02160 -10.91788 -10.84225 -10.45643 -10.33842 -10.22704 -10.12574 -10.10772 -10.00641 -9.72980 -9.64783 -9.53001 -9.28083 -8.55510 -8.44744 -6.80174 -5.66973 -3.00282 0.46837 0.82847 2.43683 2.71879 3.38946 3.43668 3.47448 3.48854 3.81638 3.91073 4.16685 4.36466 4.42932 4.51008 4.61016 4.69824 4.82075 4.97786 4.99004 5.12218 5.13931 5.20410 5.30909 5.35547 5.43599 5.47966 5.50084 5.56849 5.57248 5.64479 5.74688 5.77064 5.77712 5.86587 5.89271 5.96460 6.12168 6.15239 6.24849 6.29529 6.47146 6.49233 6.53589 6.63560 7.16308 7.57400 7.57839 7.64329 7.66171 7.85971 7.92644 8.28494 9.25099 9.85113 10.50674 11.44804 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.002914 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.408529 B = 9606.773943 C = 9928.816307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.179 3.821 3 N -0.486 5.486 4 C 0.121 3.879 5 C -0.185 4.185 6 C -0.041 4.041 7 C -0.178 4.178 8 C 0.568 3.432 9 O -0.524 6.524 10 N -0.603 5.603 11 C 0.077 3.923 12 C 0.070 3.930 13 H 0.066 0.934 14 C -0.141 4.141 15 O -0.342 6.342 16 C 0.093 3.907 17 C -0.166 4.166 18 C 0.186 3.814 19 N -0.599 5.599 20 C -0.225 4.225 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.153 3.847 29 C 0.097 3.903 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.051 0.949 48 H 0.104 0.896 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.819 13.923 9.044 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.041 3.959 3 N -0.195 5.195 4 C -0.037 4.037 5 C -0.205 4.205 6 C -0.068 4.068 7 C -0.183 4.183 8 C 0.355 3.645 9 O -0.401 6.401 10 N -0.336 5.336 11 C -0.046 4.046 12 C 0.011 3.989 13 H 0.083 0.917 14 C -0.198 4.198 15 O -0.261 6.261 16 C 0.051 3.949 17 C -0.204 4.204 18 C 0.062 3.938 19 N -0.325 5.325 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.212 1.212 28 C 0.026 3.974 29 C -0.025 4.025 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.123 0.877 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.762 14.378 9.195 23.232 hybrid contribution 0.313 -1.235 -0.408 1.338 sum 16.075 13.143 8.787 22.547 Atomic orbital electron populations 1.20824 0.87837 1.03838 1.04051 1.21419 0.97362 0.86567 0.90527 1.67613 1.10042 1.28498 1.13342 1.22968 0.89362 0.98794 0.92559 1.22073 1.01791 0.92953 1.03679 1.21730 0.92716 0.99145 0.93177 1.20787 0.94801 0.94922 1.07802 1.18056 0.82273 0.82842 0.81349 1.90813 1.32288 1.78984 1.37976 1.48123 1.45590 1.13991 1.25916 1.22618 0.92897 1.02092 0.86979 1.22427 0.96514 0.86486 0.93480 0.91659 1.21688 0.98521 1.01654 0.97983 1.87922 1.58517 1.26055 1.53590 1.22442 0.88090 0.99070 0.85279 1.23372 0.96723 0.98978 1.01336 1.21097 0.95066 0.82218 0.95463 1.44409 1.41388 1.05105 1.41627 1.18993 1.15555 0.86958 1.13861 0.90443 1.24789 0.99147 0.96932 0.99554 1.69959 1.29959 1.20744 1.36333 0.86190 0.78139 0.81718 0.79648 1.21663 1.21203 1.21193 1.21379 0.91831 0.90782 0.93370 1.22233 0.99043 0.82053 0.99215 0.89377 0.90111 0.90262 0.82219 0.84067 0.84269 0.89398 0.90374 0.91699 0.90910 0.91380 0.92112 0.91560 0.93514 0.93957 0.93777 0.94505 0.93099 0.87745 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.44 36.00 0.34 -0.92 16 2 C 0.18 2.15 6.82 -82.18 -0.56 1.58 16 3 N -0.49 -5.40 10.26 -9.15 -0.09 -5.49 16 4 C 0.12 0.97 11.17 -17.47 -0.20 0.77 16 5 C -0.19 -1.27 10.10 -39.49 -0.40 -1.67 16 6 C -0.04 -0.36 8.00 -38.87 -0.31 -0.67 16 7 C -0.18 -2.06 4.62 -104.82 -0.48 -2.55 16 8 C 0.57 7.88 6.14 -12.33 -0.08 7.80 16 9 O -0.52 -8.87 15.40 5.32 0.08 -8.79 16 10 N -0.60 -7.95 2.95 -173.82 -0.51 -8.46 16 11 C 0.08 0.85 5.04 -3.54 -0.02 0.83 16 12 C 0.07 0.94 3.19 -26.59 -0.08 0.86 16 13 H 0.07 0.96 6.22 -51.93 -0.32 0.64 16 14 C -0.14 -1.54 9.57 37.16 0.36 -1.19 16 15 O -0.34 -6.08 9.94 -35.22 -0.35 -6.43 16 16 C 0.09 1.65 0.84 -89.52 -0.08 1.57 16 17 C -0.17 -3.23 5.86 -25.24 -0.15 -3.37 16 18 C 0.19 4.63 5.38 -2.95 -0.02 4.62 16 19 N -0.60 -15.50 3.40 -170.16 -0.58 -16.07 16 20 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -27.44 10.31 55.49 0.57 -26.86 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.15 3.18 6.43 -2.75 -0.02 3.16 16 29 C 0.10 1.44 5.31 -3.92 -0.02 1.41 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.03 6.55 -51.93 -0.34 0.69 16 33 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 35 H 0.14 0.96 7.81 -52.49 -0.41 0.55 16 36 H 0.09 0.82 5.58 -51.93 -0.29 0.53 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.06 1.12 6.07 -51.93 -0.32 0.80 16 42 H 0.07 1.26 7.83 -51.93 -0.41 0.86 16 43 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 44 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.10 1.65 6.84 -51.93 -0.36 1.29 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -33.99 384.01 -9.48 -43.47 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.40 Total: 0.11 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.96 Total: 5.42 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.61 Total: -56.89 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.27 Total: -15.22 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.99 -9.48 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202320.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.759 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds