Wall clock time and date at job start Wed Apr 1 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31694 * 119.71532 * 2 1 4 4 C 1.31929 * 121.88182 * 179.97438 * 3 2 1 5 5 C 1.38354 * 121.07892 * 359.97438 * 4 3 2 6 6 C 1.38357 * 119.30292 * 359.70230 * 5 4 3 7 7 C 1.39519 * 119.72091 * 179.97438 * 2 1 3 8 8 C 1.47837 * 120.55702 * 359.97438 * 7 2 1 9 9 O 1.21554 * 120.00339 * 306.73107 * 8 7 2 10 10 N 1.34781 * 120.00352 * 126.72512 * 8 7 2 11 11 C 1.47169 * 121.06997 * 354.15821 * 10 8 7 12 12 C 1.53273 * 108.55770 * 231.24537 * 11 10 8 13 13 H 1.09002 * 109.51019 * 66.94339 * 12 11 10 14 14 C 1.53003 * 109.50897 * 187.03474 * 12 11 10 15 15 O 1.43120 * 109.23169 * 307.00890 * 12 11 10 16 16 C 1.41892 * 114.36025 * 60.90613 * 15 12 11 17 17 C 1.54380 * 110.71990 * 63.26713 * 16 15 12 18 18 C 1.54465 * 102.86338 * 83.69669 * 17 16 15 19 19 N 1.47089 * 107.29875 * 21.49868 * 18 17 16 20 20 C 1.36932 * 125.62650 * 180.97956 * 19 18 17 21 21 H 1.08002 * 120.00367 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00184 * 0.02562 * 20 19 18 23 23 N 1.31625 * 120.00020 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00088 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46946 * 180.02562 * 24 22 20 26 26 H 1.48493 * 109.47010 * 300.00453 * 24 22 20 27 27 H 1.48500 * 109.46764 * 60.00506 * 24 22 20 28 28 C 1.47575 * 108.74195 * 1.24433 * 19 18 17 29 29 C 1.47331 * 121.07962 * 174.17832 * 10 8 7 30 30 H 1.09007 * 109.47093 * 274.83507 * 1 2 3 31 31 H 1.08997 * 109.47175 * 34.83826 * 1 2 3 32 32 H 1.08997 * 109.47285 * 154.83973 * 1 2 3 33 33 H 1.07999 * 119.46541 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.35321 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.86111 * 180.29190 * 6 5 4 36 36 H 1.08997 * 109.62230 * 350.96841 * 11 10 8 37 37 H 1.08999 * 109.61940 * 111.33377 * 11 10 8 38 38 H 1.08999 * 109.47306 * 60.00044 * 14 12 11 39 39 H 1.09003 * 109.47153 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47147 * 299.99861 * 14 12 11 41 41 H 1.08991 * 110.73393 * 325.35271 * 17 16 15 42 42 H 1.09005 * 110.73486 * 202.03814 * 17 16 15 43 43 H 1.08999 * 109.87838 * 262.07623 * 18 17 16 44 44 H 1.08994 * 109.87653 * 140.92488 * 18 17 16 45 45 H 0.97002 * 119.99728 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.37801 * 95.26051 * 28 19 18 47 47 H 1.09003 * 110.37039 * 217.61134 * 28 19 18 48 48 H 1.09004 * 109.67661 * 11.05546 * 29 10 8 49 49 H 1.08996 * 109.68091 * 250.51106 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2366 0.0365 0.0016 6 6 3.5987 -1.1912 0.0084 7 6 2.1986 -1.2117 0.0005 8 6 1.4657 -2.4955 0.0017 9 8 0.6179 -2.7107 0.8458 10 7 1.7373 -3.4275 -0.9333 11 6 2.6649 -3.1449 -2.0404 12 6 1.9766 -3.5129 -3.3595 13 1 1.1400 -2.8364 -3.5347 14 6 2.9790 -3.3943 -4.5093 15 8 1.4951 -4.8584 -3.2807 16 6 0.5397 -5.0790 -2.2551 17 6 -0.7361 -4.2476 -2.5091 18 6 -1.5349 -5.1343 -3.4896 19 7 -1.0382 -6.5106 -3.3387 20 6 -1.4756 -7.5985 -4.0459 21 1 -1.0457 -8.5717 -3.8603 22 6 -2.4717 -7.4506 -5.0013 23 7 -2.9954 -6.2644 -5.2279 24 14 -3.0680 -8.9347 -5.9665 25 1 -4.1276 -8.5133 -6.9178 26 1 -1.9323 -9.5237 -6.7203 27 1 -3.6177 -9.9465 -5.0289 28 6 0.0050 -6.5264 -2.2949 29 6 1.1149 -4.7619 -0.8804 30 1 -0.3634 0.0866 1.0241 31 1 -0.3633 0.8434 -0.5870 32 1 -0.3634 -0.9301 -0.4369 33 1 3.9734 2.1533 0.0009 34 1 5.3152 0.0910 0.0016 35 1 4.1661 -2.1102 0.0141 36 1 2.9191 -2.0850 -2.0434 37 1 3.5711 -3.7383 -1.9191 38 1 3.8144 -4.0721 -4.3344 39 1 2.4887 -3.6556 -5.4472 40 1 3.3477 -2.3700 -4.5657 41 1 -0.4881 -3.2908 -2.9685 42 1 -1.2912 -4.0997 -1.5827 43 1 -1.3753 -4.7928 -4.5123 44 1 -2.5963 -5.0945 -3.2448 45 1 -3.6911 -6.1611 -5.8958 46 1 -0.4256 -6.8014 -1.3321 47 1 0.8028 -7.2177 -2.5663 48 1 0.3163 -4.7652 -0.1386 49 1 1.8654 -5.5067 -0.6159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071202320.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:09 Heat of formation + Delta-G solvation = -22.456704 kcal Electronic energy + Delta-G solvation = -31922.675013 eV Core-core repulsion = 27850.165916 eV Total energy + Delta-G solvation = -4072.509097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21738 -41.14370 -39.69289 -37.99155 -35.95494 -34.83671 -34.02515 -33.54428 -32.90343 -31.12772 -30.14509 -28.86566 -27.70602 -27.27563 -25.93378 -24.70926 -23.31771 -23.06258 -22.06291 -21.29098 -20.32766 -18.96785 -18.59763 -18.08364 -17.83622 -17.30388 -17.09573 -16.76753 -16.37888 -15.85997 -15.76353 -15.65079 -15.29701 -15.13058 -15.07054 -14.55364 -14.36787 -14.05677 -14.00555 -13.81005 -13.61326 -13.50772 -13.24780 -13.17032 -13.11328 -13.06303 -12.99228 -12.82062 -12.73825 -12.28898 -12.09396 -12.04978 -11.86834 -11.75846 -11.55970 -11.22140 -10.96160 -10.83152 -10.70348 -10.49096 -9.99912 -9.60206 -8.92109 -7.84660 -5.20659 -0.24860 0.18230 1.42272 1.45312 1.49477 1.55399 1.72758 2.48927 2.57538 2.69616 3.16271 3.31913 3.34382 3.45827 3.54916 3.66499 3.79327 3.85862 3.89122 3.90173 4.00344 4.07310 4.15545 4.33752 4.36354 4.44664 4.49453 4.52731 4.56316 4.58635 4.60668 4.66834 4.71989 4.76194 4.82763 4.92650 5.00735 5.03674 5.04144 5.06754 5.08355 5.19646 5.29633 5.42390 5.56423 5.62385 5.69056 6.14681 6.16629 6.35573 6.88086 6.90768 7.07965 7.74889 8.39862 9.26081 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.002914 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.408529 B = 9606.773943 C = 9928.816307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.158 3.842 3 N -0.509 5.509 4 C 0.117 3.883 5 C -0.166 4.166 6 C -0.039 4.039 7 C -0.196 4.196 8 C 0.569 3.431 9 O -0.564 6.564 10 N -0.603 5.603 11 C 0.085 3.915 12 C 0.061 3.939 13 H 0.045 0.955 14 C -0.135 4.135 15 O -0.367 6.367 16 C 0.109 3.891 17 C -0.150 4.150 18 C 0.200 3.800 19 N -0.621 5.621 20 C -0.240 4.240 21 H 0.086 0.914 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.982 3.018 25 H -0.296 1.296 26 H -0.276 1.276 27 H -0.275 1.275 28 C 0.146 3.854 29 C 0.106 3.894 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.193 0.807 34 H 0.184 0.816 35 H 0.162 0.838 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.003 0.997 45 H 0.246 0.754 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.931 14.606 9.772 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.021 3.979 3 N -0.219 5.219 4 C -0.040 4.040 5 C -0.185 4.185 6 C -0.065 4.065 7 C -0.202 4.202 8 C 0.358 3.642 9 O -0.443 6.443 10 N -0.335 5.335 11 C -0.037 4.037 12 C 0.003 3.997 13 H 0.063 0.937 14 C -0.192 4.192 15 O -0.286 6.286 16 C 0.068 3.932 17 C -0.188 4.188 18 C 0.074 3.926 19 N -0.347 5.347 20 C -0.369 4.369 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.810 3.190 25 H -0.222 1.222 26 H -0.202 1.202 27 H -0.201 1.201 28 C 0.021 3.979 29 C -0.017 4.017 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.210 0.790 34 H 0.201 0.799 35 H 0.180 0.820 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.111 0.889 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.922 15.061 9.936 26.878 hybrid contribution -0.880 -1.360 -0.637 1.741 sum 19.042 13.701 9.299 25.234 Atomic orbital electron populations 1.20725 0.88938 1.02914 1.03665 1.21339 0.97153 0.87321 0.92099 1.67610 1.11887 1.28080 1.14303 1.23646 0.88420 1.00961 0.90935 1.22506 1.03677 0.91475 1.00843 1.22047 0.91250 1.01016 0.92222 1.20635 0.96181 0.93161 1.10174 1.18448 0.81675 0.83419 0.80644 1.90787 1.34114 1.79792 1.39646 1.48155 1.45672 1.13195 1.26438 1.22722 0.92684 1.03972 0.84307 1.22722 0.96752 0.83993 0.96274 0.93682 1.21703 0.97840 1.04073 0.95585 1.87882 1.58187 1.28746 1.53809 1.22129 0.87509 0.96290 0.87312 1.23166 0.97304 0.98544 0.99824 1.20732 0.93859 0.83324 0.94646 1.44696 1.42678 1.04772 1.42557 1.19448 1.15460 0.88068 1.13901 0.89595 1.25697 0.99696 0.99788 1.00965 1.70206 1.30406 1.22862 1.36860 0.85104 0.77474 0.78393 0.78068 1.22199 1.20169 1.20104 1.21592 0.90821 0.93156 0.92347 1.21986 0.99498 0.83825 0.96376 0.89894 0.89472 0.92349 0.79000 0.79913 0.82012 0.87171 0.87577 0.90340 0.93231 0.88049 0.91311 0.91322 0.97474 0.97838 0.94533 0.93186 0.92604 0.88945 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 9.44 71.23 0.67 -1.88 16 2 C 0.16 3.66 6.82 42.89 0.29 3.95 16 3 N -0.51 -10.32 10.26 -182.85 -1.88 -12.20 16 4 C 0.12 1.42 11.17 84.71 0.95 2.37 16 5 C -0.17 -1.41 10.10 22.33 0.23 -1.18 16 6 C -0.04 -0.51 8.00 22.73 0.18 -0.33 16 7 C -0.20 -4.18 4.62 -19.99 -0.09 -4.27 16 8 C 0.57 15.27 6.14 86.78 0.53 15.80 16 9 O -0.56 -19.36 15.40 -3.89 -0.06 -19.42 16 10 N -0.60 -14.81 2.95 -822.10 -2.42 -17.23 16 11 C 0.09 1.59 5.04 86.34 0.44 2.02 16 12 C 0.06 1.55 3.19 30.69 0.10 1.65 16 13 H 0.05 1.33 6.22 -2.39 -0.01 1.31 16 14 C -0.13 -2.63 9.57 71.98 0.69 -1.94 16 15 O -0.37 -12.82 9.94 -148.95 -1.48 -14.30 16 16 C 0.11 3.88 0.84 -10.08 -0.01 3.87 16 17 C -0.15 -6.09 5.86 31.56 0.19 -5.91 16 18 C 0.20 10.57 5.38 86.76 0.47 11.04 16 19 N -0.62 -33.27 3.40 -692.27 -2.35 -35.62 16 20 C -0.24 -13.86 10.28 84.03 0.86 -12.99 16 21 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 23 N -0.95 -59.61 10.31 21.65 0.22 -59.39 16 24 Si 0.98 46.96 29.55 68.60 2.03 48.98 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 C 0.15 6.11 6.43 86.63 0.56 6.67 16 29 C 0.11 3.02 5.31 86.01 0.46 3.48 16 30 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.62 6.55 -2.39 -0.02 1.60 16 33 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 35 H 0.16 1.35 7.81 -2.91 -0.02 1.33 16 36 H 0.11 1.62 5.58 -2.39 -0.01 1.60 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 2.66 6.07 -2.39 -0.01 2.65 16 42 H 0.07 2.74 7.83 -2.38 -0.02 2.72 16 43 H 0.01 0.42 7.38 -2.39 -0.02 0.40 16 44 H 0.00 0.20 7.50 -2.39 -0.02 0.19 16 45 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.05 1.97 8.00 -2.39 -0.02 1.95 16 47 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.09 2.90 6.84 -2.38 -0.02 2.88 16 49 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -79.67 384.01 1.98 -77.69 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.95 Total: 12.74 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 6.97 Total: 18.75 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -6.43 Total: -124.44 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.54 Total: -33.72 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -79.67 1.98 -77.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202320.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.231 kcal (2) G-P(sol) polarization free energy of solvation -79.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds