Wall clock time and date at job start Wed Apr 1 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31692 * 119.71591 * 2 1 4 4 C 1.31921 * 121.88217 * 179.97438 * 3 2 1 5 5 C 1.38355 * 121.07977 * 359.97438 * 4 3 2 6 6 C 1.38360 * 119.29988 * 359.72840 * 5 4 3 7 7 C 1.39524 * 119.71799 * 179.97438 * 2 1 3 8 8 C 1.47836 * 120.55700 * 0.02562 * 7 2 1 9 9 O 1.21558 * 120.00260 * 54.49115 * 8 7 2 10 10 N 1.34782 * 120.00129 * 234.48359 * 8 7 2 11 11 C 1.47157 * 121.06564 * 355.76212 * 10 8 7 12 12 C 1.53276 * 108.55419 * 128.88822 * 11 10 8 13 13 H 1.08996 * 109.51224 * 292.92258 * 12 11 10 14 14 C 1.53001 * 109.51360 * 172.81969 * 12 11 10 15 15 O 1.43098 * 109.22313 * 52.89340 * 12 11 10 16 16 C 1.42066 * 114.33324 * 298.85101 * 15 12 11 17 17 C 1.54496 * 110.38465 * 182.83589 * 16 15 12 18 18 C 1.55280 * 101.42357 * 83.74801 * 17 16 15 19 19 N 1.47483 * 104.77668 * 36.68932 * 18 17 16 20 20 C 1.36938 * 125.66406 * 155.88409 * 19 18 17 21 21 H 1.07996 * 119.99993 * 179.69552 * 20 19 18 22 22 C 1.38805 * 119.99824 * 359.69820 * 20 19 18 23 23 N 1.31622 * 119.99961 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47292 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.47221 * 300.00046 * 24 22 20 27 27 H 1.48500 * 109.47217 * 59.99949 * 24 22 20 28 28 C 1.47185 * 108.67351 * 335.62340 * 19 18 17 29 29 C 1.47302 * 121.06296 * 175.78306 * 10 8 7 30 30 H 1.09002 * 109.47121 * 274.22372 * 1 2 3 31 31 H 1.09000 * 109.47549 * 34.22558 * 1 2 3 32 32 H 1.09001 * 109.47176 * 154.21990 * 1 2 3 33 33 H 1.08001 * 119.46604 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.35255 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.85572 * 180.29968 * 6 5 4 36 36 H 1.09006 * 109.62268 * 248.60919 * 11 10 8 37 37 H 1.09002 * 109.62449 * 9.16741 * 11 10 8 38 38 H 1.08991 * 109.47149 * 59.99959 * 14 12 11 39 39 H 1.08996 * 109.46996 * 180.02562 * 14 12 11 40 40 H 1.09004 * 109.47098 * 299.99934 * 14 12 11 41 41 H 1.09000 * 111.01087 * 202.00082 * 17 16 15 42 42 H 1.08994 * 111.01221 * 325.83558 * 17 16 15 43 43 H 1.09003 * 110.49968 * 277.83615 * 18 17 16 44 44 H 1.08991 * 110.32470 * 155.46439 * 18 17 16 45 45 H 0.97009 * 119.99930 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.90721 * 121.14402 * 28 19 18 47 47 H 1.09000 * 109.90849 * 242.21936 * 28 19 18 48 48 H 1.09002 * 109.68113 * 109.65803 * 29 10 8 49 49 H 1.08994 * 109.68198 * 349.09799 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2366 0.0365 0.0016 6 6 3.5987 -1.1913 0.0079 7 6 2.1987 -1.2117 0.0005 8 6 1.4656 -2.4956 0.0005 9 8 0.6336 -2.7204 -0.8566 10 7 1.7200 -3.4168 0.9509 11 6 2.7858 -3.2090 1.9441 12 6 2.2014 -3.4395 3.3422 13 1 1.4758 -2.6578 3.5668 14 6 3.3266 -3.4055 4.3784 15 8 1.5564 -4.7164 3.3786 16 6 0.4739 -4.8515 2.4685 17 6 -0.1984 -6.2328 2.6333 18 6 -1.1651 -5.9648 3.8186 19 7 -1.6446 -4.5860 3.6087 20 6 -2.8179 -4.0672 4.0876 21 1 -3.0775 -3.0393 3.8819 22 6 -3.6735 -4.8625 4.8373 23 7 -3.3574 -6.1154 5.0875 24 14 -5.2737 -4.1546 5.4912 25 1 -6.0016 -5.1994 6.2552 26 1 -4.9783 -3.0049 6.3836 27 1 -6.1131 -3.6964 4.3551 28 6 -0.6497 -3.8584 2.8042 29 6 0.9402 -4.6641 1.0284 30 1 -0.3633 0.0757 1.0249 31 1 -0.3634 0.8497 -0.5780 32 1 -0.3633 -0.9254 -0.4470 33 1 3.9734 2.1533 0.0009 34 1 5.3152 0.0910 0.0024 35 1 4.1660 -2.1102 0.0137 36 1 3.5960 -3.9159 1.7648 37 1 3.1628 -2.1891 1.8685 38 1 3.8202 -2.4344 4.3469 39 1 2.9103 -3.5700 5.3722 40 1 4.0508 -4.1887 4.1541 41 1 -0.7458 -6.5109 1.7327 42 1 0.5350 -6.9958 2.8937 43 1 -0.6352 -6.0414 4.7681 44 1 -2.0000 -6.6649 3.7919 45 1 -3.9552 -6.6711 5.6118 46 1 -1.1098 -3.4941 1.8857 47 1 -0.2502 -3.0212 3.3765 48 1 1.5651 -5.5067 0.7324 49 1 0.0754 -4.5980 0.3683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071202321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:14 Heat of formation + Delta-G solvation = 2.524710 kcal Electronic energy + Delta-G solvation = -32120.930907 eV Core-core repulsion = 28049.505085 eV Total energy + Delta-G solvation = -4071.425822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.24527 -40.07197 -38.54924 -36.41691 -34.82333 -33.38254 -33.20266 -32.58369 -31.35912 -29.45499 -28.60339 -27.75612 -26.63980 -25.91567 -24.57492 -23.53482 -22.42577 -21.86305 -20.43480 -20.07357 -18.93988 -17.65226 -17.15623 -17.00889 -16.61744 -16.55012 -16.12307 -15.20831 -14.91374 -14.66769 -14.60970 -14.47546 -14.03535 -13.85674 -13.67011 -13.51000 -13.33110 -12.97466 -12.68581 -12.58759 -12.35269 -12.31167 -12.27254 -12.16386 -11.98010 -11.61151 -11.56055 -11.12616 -10.93061 -10.84494 -10.53973 -10.41903 -10.29852 -10.13129 -10.05709 -9.90091 -9.64229 -9.62001 -9.54500 -9.22505 -8.64149 -8.44416 -6.83005 -5.64139 -3.06009 0.51698 0.86486 2.44683 2.75180 3.41783 3.42779 3.45785 3.47127 3.79173 3.96733 4.19651 4.38968 4.46215 4.48469 4.59087 4.72961 4.82412 4.97968 5.00405 5.13209 5.16512 5.25228 5.31241 5.41299 5.43414 5.46896 5.52531 5.57052 5.58711 5.65190 5.67475 5.82547 5.83980 5.87455 5.98753 5.99541 6.09567 6.22846 6.24251 6.33727 6.43535 6.50827 6.59214 6.66307 7.17749 7.55459 7.59817 7.62162 7.63392 7.85624 7.95275 8.36134 9.22594 9.82775 10.47638 11.39552 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003520 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.704937 B = 7952.805296 C = 8835.101880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.184 3.816 3 N -0.485 5.485 4 C 0.120 3.880 5 C -0.186 4.186 6 C -0.044 4.044 7 C -0.178 4.178 8 C 0.569 3.431 9 O -0.525 6.525 10 N -0.603 5.603 11 C 0.073 3.927 12 C 0.068 3.932 13 H 0.069 0.931 14 C -0.140 4.140 15 O -0.352 6.352 16 C 0.094 3.906 17 C -0.130 4.130 18 C 0.157 3.843 19 N -0.600 5.600 20 C -0.223 4.223 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.286 1.286 27 H -0.284 1.284 28 C 0.122 3.878 29 C 0.099 3.901 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.017 0.983 44 H 0.109 0.891 45 H 0.253 0.747 46 H 0.029 0.971 47 H 0.023 0.977 48 H 0.076 0.924 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.091 8.411 -8.541 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.045 3.955 3 N -0.195 5.195 4 C -0.037 4.037 5 C -0.206 4.206 6 C -0.071 4.071 7 C -0.183 4.183 8 C 0.357 3.643 9 O -0.401 6.401 10 N -0.336 5.336 11 C -0.050 4.050 12 C 0.010 3.990 13 H 0.086 0.914 14 C -0.198 4.198 15 O -0.271 6.271 16 C 0.053 3.947 17 C -0.169 4.169 18 C 0.032 3.968 19 N -0.326 5.326 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.215 1.215 26 H -0.213 1.213 27 H -0.211 1.211 28 C -0.004 4.004 29 C -0.023 4.023 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.035 0.965 44 H 0.126 0.874 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.041 0.959 48 H 0.094 0.906 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.015 8.839 -8.754 21.893 hybrid contribution -0.059 -0.075 0.299 0.314 sum 17.955 8.765 -8.455 21.696 Atomic orbital electron populations 1.21057 0.87866 1.05438 1.03952 1.21413 0.97424 0.86462 0.90153 1.67633 1.10014 1.28517 1.13290 1.22971 0.89402 0.98780 0.92543 1.22061 1.01746 0.92954 1.03841 1.21730 0.92730 0.99139 0.93467 1.20751 0.94781 0.94974 1.07821 1.18057 0.82254 0.82750 0.81273 1.90784 1.34145 1.78484 1.36721 1.48144 1.35557 1.19775 1.30097 1.22712 0.90241 1.02884 0.89134 1.22445 0.95040 0.88245 0.93297 0.91362 1.21688 0.97007 1.01975 0.99132 1.87881 1.46543 1.32143 1.60528 1.22326 0.86554 0.99123 0.86668 1.23050 0.98797 0.92747 1.02270 1.22011 0.95496 0.87922 0.91322 1.44486 1.18857 1.08584 1.60650 1.19010 0.93923 0.95743 1.26457 0.90687 1.24763 0.99055 0.96141 1.00504 1.69774 1.37195 1.06136 1.43904 0.86155 0.83080 0.77684 0.78596 1.21513 1.21258 1.21104 1.21709 0.89820 0.93836 0.95059 1.22332 0.97011 0.84721 0.98247 0.89790 0.89916 0.88437 0.82239 0.84076 0.84241 0.90272 0.89022 0.91283 0.91031 0.91717 0.90466 0.91002 0.96453 0.87371 0.93647 0.95301 0.95929 0.90622 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.87 36.01 0.36 -1.29 16 2 C 0.18 2.39 6.82 -82.17 -0.56 1.83 16 3 N -0.49 -5.83 10.26 -9.14 -0.09 -5.92 16 4 C 0.12 1.05 11.17 -17.47 -0.20 0.85 16 5 C -0.19 -1.36 10.10 -39.49 -0.40 -1.76 16 6 C -0.04 -0.40 7.62 -38.87 -0.30 -0.70 16 7 C -0.18 -2.21 4.88 -104.82 -0.51 -2.72 16 8 C 0.57 8.36 6.59 -12.33 -0.08 8.28 16 9 O -0.52 -9.30 14.62 5.32 0.08 -9.22 16 10 N -0.60 -8.32 2.94 -173.74 -0.51 -8.83 16 11 C 0.07 0.82 5.00 -3.54 -0.02 0.80 16 12 C 0.07 0.93 3.17 -26.59 -0.08 0.84 16 13 H 0.07 1.06 6.23 -51.93 -0.32 0.74 16 14 C -0.14 -1.48 9.57 37.16 0.36 -1.12 16 15 O -0.35 -6.07 9.90 -35.23 -0.35 -6.42 16 16 C 0.09 1.69 0.80 -89.73 -0.07 1.61 16 17 C -0.13 -2.47 6.23 -24.74 -0.15 -2.62 16 18 C 0.16 3.86 5.91 -2.30 -0.01 3.85 16 19 N -0.60 -15.66 3.40 -170.07 -0.58 -16.24 16 20 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.12 2.65 6.32 -3.32 -0.02 2.63 16 29 C 0.10 1.52 5.19 -3.85 -0.02 1.50 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.44 5.56 -51.93 -0.29 1.16 16 33 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.14 0.98 7.45 -52.49 -0.39 0.58 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.87 4.94 -51.93 -0.26 0.61 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.11 2.95 5.86 -51.93 -0.30 2.65 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 46 H 0.03 0.65 7.61 -51.93 -0.40 0.25 16 47 H 0.02 0.51 6.02 -51.93 -0.31 0.20 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.10 1.76 6.86 -51.93 -0.36 1.40 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -33.70 381.16 -9.38 -43.08 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.24 Total: 1.77 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.97 Total: 5.14 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.62 Total: -57.37 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.27 Total: -15.63 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.70 -9.38 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.602 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds