Wall clock time and date at job start Wed Apr 1 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31692 * 119.71591 * 2 1 4 4 C 1.31921 * 121.88217 * 179.97438 * 3 2 1 5 5 C 1.38355 * 121.07977 * 359.97438 * 4 3 2 6 6 C 1.38360 * 119.29988 * 359.72840 * 5 4 3 7 7 C 1.39524 * 119.71799 * 179.97438 * 2 1 3 8 8 C 1.47836 * 120.55700 * 0.02562 * 7 2 1 9 9 O 1.21558 * 120.00260 * 54.49115 * 8 7 2 10 10 N 1.34782 * 120.00129 * 234.48359 * 8 7 2 11 11 C 1.47157 * 121.06564 * 355.76212 * 10 8 7 12 12 C 1.53276 * 108.55419 * 128.88822 * 11 10 8 13 13 H 1.08996 * 109.51224 * 292.92258 * 12 11 10 14 14 C 1.53001 * 109.51360 * 172.81969 * 12 11 10 15 15 O 1.43098 * 109.22313 * 52.89340 * 12 11 10 16 16 C 1.42066 * 114.33324 * 298.85101 * 15 12 11 17 17 C 1.54496 * 110.38465 * 182.83589 * 16 15 12 18 18 C 1.55280 * 101.42357 * 83.74801 * 17 16 15 19 19 N 1.47483 * 104.77668 * 36.68932 * 18 17 16 20 20 C 1.36938 * 125.66406 * 155.88409 * 19 18 17 21 21 H 1.07996 * 119.99993 * 179.69552 * 20 19 18 22 22 C 1.38805 * 119.99824 * 359.69820 * 20 19 18 23 23 N 1.31622 * 119.99961 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47292 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.47221 * 300.00046 * 24 22 20 27 27 H 1.48500 * 109.47217 * 59.99949 * 24 22 20 28 28 C 1.47185 * 108.67351 * 335.62340 * 19 18 17 29 29 C 1.47302 * 121.06296 * 175.78306 * 10 8 7 30 30 H 1.09002 * 109.47121 * 274.22372 * 1 2 3 31 31 H 1.09000 * 109.47549 * 34.22558 * 1 2 3 32 32 H 1.09001 * 109.47176 * 154.21990 * 1 2 3 33 33 H 1.08001 * 119.46604 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.35255 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.85572 * 180.29968 * 6 5 4 36 36 H 1.09006 * 109.62268 * 248.60919 * 11 10 8 37 37 H 1.09002 * 109.62449 * 9.16741 * 11 10 8 38 38 H 1.08991 * 109.47149 * 59.99959 * 14 12 11 39 39 H 1.08996 * 109.46996 * 180.02562 * 14 12 11 40 40 H 1.09004 * 109.47098 * 299.99934 * 14 12 11 41 41 H 1.09000 * 111.01087 * 202.00082 * 17 16 15 42 42 H 1.08994 * 111.01221 * 325.83558 * 17 16 15 43 43 H 1.09003 * 110.49968 * 277.83615 * 18 17 16 44 44 H 1.08991 * 110.32470 * 155.46439 * 18 17 16 45 45 H 0.97009 * 119.99930 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.90721 * 121.14402 * 28 19 18 47 47 H 1.09000 * 109.90849 * 242.21936 * 28 19 18 48 48 H 1.09002 * 109.68113 * 109.65803 * 29 10 8 49 49 H 1.08994 * 109.68198 * 349.09799 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2366 0.0365 0.0016 6 6 3.5987 -1.1913 0.0079 7 6 2.1987 -1.2117 0.0005 8 6 1.4656 -2.4956 0.0005 9 8 0.6336 -2.7204 -0.8566 10 7 1.7200 -3.4168 0.9509 11 6 2.7858 -3.2090 1.9441 12 6 2.2014 -3.4395 3.3422 13 1 1.4758 -2.6578 3.5668 14 6 3.3266 -3.4055 4.3784 15 8 1.5564 -4.7164 3.3786 16 6 0.4739 -4.8515 2.4685 17 6 -0.1984 -6.2328 2.6333 18 6 -1.1651 -5.9648 3.8186 19 7 -1.6446 -4.5860 3.6087 20 6 -2.8179 -4.0672 4.0876 21 1 -3.0775 -3.0393 3.8819 22 6 -3.6735 -4.8625 4.8373 23 7 -3.3574 -6.1154 5.0875 24 14 -5.2737 -4.1546 5.4912 25 1 -6.0016 -5.1994 6.2552 26 1 -4.9783 -3.0049 6.3836 27 1 -6.1131 -3.6964 4.3551 28 6 -0.6497 -3.8584 2.8042 29 6 0.9402 -4.6641 1.0284 30 1 -0.3633 0.0757 1.0249 31 1 -0.3634 0.8497 -0.5780 32 1 -0.3633 -0.9254 -0.4470 33 1 3.9734 2.1533 0.0009 34 1 5.3152 0.0910 0.0024 35 1 4.1660 -2.1102 0.0137 36 1 3.5960 -3.9159 1.7648 37 1 3.1628 -2.1891 1.8685 38 1 3.8202 -2.4344 4.3469 39 1 2.9103 -3.5700 5.3722 40 1 4.0508 -4.1887 4.1541 41 1 -0.7458 -6.5109 1.7327 42 1 0.5350 -6.9958 2.8937 43 1 -0.6352 -6.0414 4.7681 44 1 -2.0000 -6.6649 3.7919 45 1 -3.9552 -6.6711 5.6118 46 1 -1.1098 -3.4941 1.8857 47 1 -0.2502 -3.0212 3.3765 48 1 1.5651 -5.5067 0.7324 49 1 0.0754 -4.5980 0.3683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071202321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:13 Heat of formation + Delta-G solvation = -20.095621 kcal Electronic energy + Delta-G solvation = -32121.911798 eV Core-core repulsion = 28049.505085 eV Total energy + Delta-G solvation = -4072.406713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.26914 -41.16448 -39.72609 -38.00502 -36.02692 -34.93146 -34.04057 -33.57866 -32.93698 -31.09817 -30.04302 -28.81721 -27.81844 -27.36562 -25.97359 -24.73028 -23.39344 -23.02951 -22.16109 -21.29679 -20.23554 -19.05508 -18.61730 -18.12814 -17.86163 -17.37066 -17.14123 -16.85820 -16.41333 -15.90403 -15.82451 -15.54591 -15.35157 -15.23867 -15.02795 -14.59775 -14.35423 -14.19330 -14.06481 -13.79301 -13.55395 -13.46426 -13.25190 -13.22308 -13.12446 -13.03078 -13.00666 -12.79759 -12.70779 -12.33214 -12.17562 -12.05538 -11.95816 -11.72769 -11.53963 -11.21910 -11.00434 -10.83206 -10.78517 -10.49061 -10.01064 -9.63473 -8.95878 -7.81795 -5.27543 -0.26374 0.15677 1.36509 1.42752 1.46270 1.52899 1.72914 2.44960 2.54774 2.67172 3.14642 3.26171 3.30307 3.45137 3.55917 3.64850 3.71811 3.82759 3.87088 3.91703 4.01605 4.06957 4.11680 4.32117 4.35591 4.48935 4.51778 4.52664 4.54433 4.54834 4.57877 4.61416 4.65113 4.75272 4.88513 4.95796 4.97121 5.01138 5.03170 5.05752 5.06915 5.20013 5.28831 5.38522 5.58055 5.60968 5.75470 6.11824 6.24910 6.27732 6.85279 6.89074 7.05584 7.70668 8.35088 9.19527 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003520 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.704937 B = 7952.805296 C = 8835.101880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.159 3.841 3 N -0.510 5.510 4 C 0.116 3.884 5 C -0.164 4.164 6 C -0.041 4.041 7 C -0.197 4.197 8 C 0.568 3.432 9 O -0.566 6.566 10 N -0.604 5.604 11 C 0.080 3.920 12 C 0.059 3.941 13 H 0.038 0.962 14 C -0.133 4.133 15 O -0.367 6.367 16 C 0.109 3.891 17 C -0.117 4.117 18 C 0.161 3.839 19 N -0.621 5.621 20 C -0.248 4.248 21 H 0.072 0.928 22 C -0.060 4.060 23 N -0.944 5.944 24 Si 0.981 3.019 25 H -0.287 1.287 26 H -0.279 1.279 27 H -0.277 1.277 28 C 0.124 3.876 29 C 0.107 3.893 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.194 0.806 34 H 0.187 0.813 35 H 0.168 0.832 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.098 0.902 43 H -0.013 1.013 44 H 0.078 0.922 45 H 0.250 0.750 46 H 0.016 0.984 47 H 0.014 0.986 48 H 0.105 0.895 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.015 9.449 -9.150 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.021 3.979 3 N -0.220 5.220 4 C -0.041 4.041 5 C -0.183 4.183 6 C -0.067 4.067 7 C -0.202 4.202 8 C 0.357 3.643 9 O -0.446 6.446 10 N -0.335 5.335 11 C -0.042 4.042 12 C 0.001 3.999 13 H 0.056 0.944 14 C -0.190 4.190 15 O -0.286 6.286 16 C 0.068 3.932 17 C -0.155 4.155 18 C 0.036 3.964 19 N -0.347 5.347 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.252 4.252 23 N -0.593 5.593 24 Si 0.808 3.192 25 H -0.213 1.213 26 H -0.206 1.206 27 H -0.203 1.203 28 C -0.002 4.002 29 C -0.016 4.016 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.211 0.789 34 H 0.205 0.795 35 H 0.185 0.815 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.005 0.995 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.123 0.877 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.976 9.894 -9.358 25.854 hybrid contribution -1.198 -0.282 0.530 1.340 sum 20.778 9.612 -8.828 24.537 Atomic orbital electron populations 1.20917 0.89451 1.04368 1.03224 1.21259 0.96975 0.87436 0.92215 1.67608 1.12041 1.28039 1.14276 1.23678 0.88352 1.01116 0.90971 1.22535 1.03774 0.91355 1.00624 1.22090 0.91048 1.01230 0.92361 1.20621 0.96383 0.93096 1.10100 1.18486 0.81722 0.83406 0.80706 1.90756 1.35993 1.79301 1.38542 1.48210 1.35836 1.19063 1.30434 1.22884 0.89763 1.05194 0.86372 1.22736 0.95223 0.85739 0.96228 0.94388 1.21703 0.96044 1.04491 0.96809 1.87859 1.45943 1.34155 1.60661 1.22028 0.85823 0.96710 0.88609 1.22903 0.98193 0.94327 1.00102 1.21761 0.95323 0.86809 0.92465 1.44786 1.19237 1.09780 1.60939 1.19341 0.95297 0.95978 1.27079 0.90978 1.25610 1.02250 0.96564 1.00826 1.70023 1.38060 1.07093 1.44161 0.85131 0.79000 0.77039 0.78017 1.21280 1.20554 1.20307 1.21792 0.90345 0.94517 0.93500 1.22104 0.97316 0.86686 0.95462 0.90716 0.89322 0.90817 0.78903 0.79540 0.81494 0.86975 0.86824 0.88135 0.93030 0.89847 0.89420 0.88388 0.99489 0.90382 0.94032 0.96626 0.96822 0.87663 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 9.87 71.24 0.70 -2.75 16 2 C 0.16 4.11 6.82 42.89 0.29 4.40 16 3 N -0.51 -11.52 10.26 -182.85 -1.88 -13.39 16 4 C 0.12 1.57 11.17 84.71 0.95 2.52 16 5 C -0.16 -1.53 10.10 22.33 0.23 -1.30 16 6 C -0.04 -0.58 7.62 22.73 0.17 -0.40 16 7 C -0.20 -4.61 4.88 -20.00 -0.10 -4.71 16 8 C 0.57 16.56 6.59 86.78 0.57 17.13 16 9 O -0.57 -20.87 14.62 -3.90 -0.06 -20.92 16 10 N -0.60 -15.88 2.94 -821.86 -2.42 -18.30 16 11 C 0.08 1.52 5.00 86.35 0.43 1.95 16 12 C 0.06 1.51 3.17 30.69 0.10 1.61 16 13 H 0.04 1.20 6.23 -2.39 -0.01 1.19 16 14 C -0.13 -2.44 9.57 71.98 0.69 -1.75 16 15 O -0.37 -12.36 9.90 -148.97 -1.48 -13.83 16 16 C 0.11 3.94 0.80 -10.22 -0.01 3.93 16 17 C -0.12 -4.46 6.23 31.89 0.20 -4.26 16 18 C 0.16 8.30 5.91 86.97 0.51 8.81 16 19 N -0.62 -34.14 3.40 -691.98 -2.35 -36.49 16 20 C -0.25 -14.72 10.28 84.03 0.86 -13.86 16 21 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 23 N -0.94 -57.36 10.09 21.65 0.22 -57.14 16 24 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 C 0.12 5.66 6.32 86.47 0.55 6.21 16 29 C 0.11 3.20 5.19 86.07 0.45 3.65 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 2.41 5.56 -2.39 -0.01 2.40 16 33 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.17 1.38 7.45 -2.91 -0.02 1.36 16 36 H 0.11 1.50 8.14 -2.38 -0.02 1.49 16 37 H 0.11 1.69 4.94 -2.39 -0.01 1.68 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.09 3.16 8.01 -2.39 -0.02 3.14 16 42 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 43 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.08 4.49 5.86 -2.39 -0.01 4.48 16 45 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 46 H 0.02 0.75 7.61 -2.39 -0.02 0.74 16 47 H 0.01 0.66 6.02 -2.39 -0.01 0.64 16 48 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 49 H 0.08 2.92 6.86 -2.39 -0.02 2.90 16 Total: -1.00 -80.10 381.16 2.09 -78.01 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.96 Total: 14.85 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 7.06 Total: 18.17 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -6.43 Total: -125.32 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.53 Total: -34.76 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -80.10 2.09 -78.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.911 kcal (2) G-P(sol) polarization free energy of solvation -80.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds