Wall clock time and date at job start Wed Apr 1 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31700 * 119.71823 * 2 1 4 4 C 1.31917 * 121.88053 * 180.24799 * 3 2 1 5 5 C 1.38356 * 121.08270 * 359.76268 * 4 3 2 6 6 C 1.38357 * 119.29876 * 359.97438 * 5 4 3 7 7 C 1.39525 * 119.71782 * 179.74716 * 2 1 3 8 8 C 1.47832 * 120.55674 * 0.02747 * 7 2 1 9 9 O 1.21550 * 120.00780 * 54.00532 * 8 7 2 10 10 N 1.34778 * 120.00076 * 234.00633 * 8 7 2 11 11 C 1.47173 * 121.07219 * 355.77485 * 10 8 7 12 12 C 1.53273 * 108.56821 * 128.80980 * 11 10 8 13 13 H 1.09009 * 109.51252 * 292.99925 * 12 11 10 14 14 C 1.53004 * 109.51228 * 172.90295 * 12 11 10 15 15 O 1.43127 * 109.23455 * 52.97585 * 12 11 10 16 16 C 1.41885 * 114.36667 * 299.10823 * 15 12 11 17 17 C 1.54365 * 110.71551 * 296.73576 * 16 15 12 18 18 C 1.54465 * 102.86995 * 276.30025 * 17 16 15 19 19 N 1.47083 * 107.29225 * 338.49949 * 18 17 16 20 20 C 1.36933 * 125.62592 * 179.02416 * 19 18 17 21 21 H 1.08005 * 120.00178 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00271 * 0.02562 * 20 19 18 23 23 N 1.31610 * 119.99681 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00004 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47503 * 59.99673 * 24 22 20 26 26 H 1.48504 * 109.47197 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47147 * 299.99861 * 24 22 20 28 28 C 1.47566 * 108.74454 * 359.02039 * 19 18 17 29 29 C 1.47327 * 121.07970 * 175.79688 * 10 8 7 30 30 H 1.09006 * 109.46888 * 274.43840 * 1 2 3 31 31 H 1.08993 * 109.47085 * 34.43697 * 1 2 3 32 32 H 1.09000 * 109.46750 * 154.43732 * 1 2 3 33 33 H 1.08006 * 119.46331 * 179.74629 * 4 3 2 34 34 H 1.07999 * 120.35321 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.85190 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.61990 * 9.08536 * 11 10 8 37 37 H 1.09003 * 109.61762 * 248.53309 * 11 10 8 38 38 H 1.09002 * 109.46479 * 59.99929 * 14 12 11 39 39 H 1.08998 * 109.46621 * 299.99961 * 14 12 11 40 40 H 1.08996 * 109.46816 * 179.97438 * 14 12 11 41 41 H 1.09006 * 110.73470 * 34.64543 * 17 16 15 42 42 H 1.09002 * 110.73778 * 157.95392 * 17 16 15 43 43 H 1.09003 * 109.87744 * 97.91971 * 18 17 16 44 44 H 1.09000 * 109.88095 * 219.07202 * 18 17 16 45 45 H 0.97002 * 119.99905 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.38087 * 264.47881 * 28 19 18 47 47 H 1.09002 * 110.38326 * 142.12749 * 28 19 18 48 48 H 1.08997 * 109.67962 * 348.89159 * 29 10 8 49 49 H 1.09001 * 109.67667 * 109.43527 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4781 1.1936 -0.0048 5 6 4.2366 0.0364 -0.0053 6 6 3.5987 -1.1913 0.0000 7 6 2.1987 -1.2117 0.0053 8 6 1.4657 -2.4955 0.0104 9 8 0.6274 -2.7202 -0.8406 10 7 1.7268 -3.4169 0.9587 11 6 2.7997 -3.2093 1.9445 12 6 2.2250 -3.4382 3.3469 13 1 1.5005 -2.6564 3.5756 14 6 3.3572 -3.4024 4.3753 15 8 1.5807 -4.7156 3.3897 16 6 0.4969 -4.8551 2.4847 17 6 -0.6339 -3.8626 2.8297 18 6 -1.4179 -4.6048 3.9345 19 7 -1.1090 -6.0368 3.8030 20 6 -1.5911 -7.0340 4.6081 21 1 -1.3032 -8.0594 4.4289 22 6 -2.4498 -6.7270 5.6547 23 7 -2.8010 -5.4775 5.8728 24 14 -3.1069 -8.0873 6.7534 25 1 -1.9724 -8.7828 7.4125 26 1 -3.9963 -7.5015 7.7884 27 1 -3.8739 -9.0589 5.9332 28 6 -0.1938 -6.2215 2.6602 29 6 0.9479 -4.6647 1.0418 30 1 -0.3633 0.0795 1.0247 31 1 -0.3633 0.8475 -0.5811 32 1 -0.3633 -0.9271 -0.4434 33 1 3.9735 2.1533 -0.0088 34 1 5.3152 0.0909 -0.0097 35 1 4.1661 -2.1103 -0.0006 36 1 3.1770 -2.1898 1.8656 37 1 3.6080 -3.9170 1.7602 38 1 3.8502 -2.4308 4.3391 39 1 4.0802 -4.1854 4.1471 40 1 2.9477 -3.5648 5.3723 41 1 -0.2236 -2.9270 3.2099 42 1 -1.2678 -3.6825 1.9614 43 1 -1.1049 -4.2467 4.9153 44 1 -2.4876 -4.4427 3.8025 45 1 -3.4008 -5.2629 6.6043 46 1 -0.7551 -6.4810 1.7626 47 1 0.5428 -6.9929 2.8845 48 1 0.0764 -4.5974 0.3907 49 1 1.5699 -5.5065 0.7375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071202322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:18 Heat of formation + Delta-G solvation = 2.168671 kcal Electronic energy + Delta-G solvation = -31983.559061 eV Core-core repulsion = 27912.117800 eV Total energy + Delta-G solvation = -4071.441261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27436 -40.08656 -38.58073 -36.43630 -34.82010 -33.37986 -33.20122 -32.57995 -31.36327 -29.42975 -28.69074 -27.92464 -26.63840 -25.89321 -24.50871 -23.50450 -22.48429 -21.89522 -20.31518 -20.11433 -19.06871 -17.65601 -17.17966 -17.02991 -16.66484 -16.57642 -16.02357 -15.25275 -14.88118 -14.70548 -14.61510 -14.37602 -14.15889 -13.92938 -13.56577 -13.55633 -13.36493 -13.02791 -12.68963 -12.59749 -12.38856 -12.31548 -12.23329 -12.15206 -11.99423 -11.85893 -11.62971 -11.03236 -10.92563 -10.84639 -10.45029 -10.33547 -10.23938 -10.12482 -10.10442 -10.01551 -9.72498 -9.62826 -9.54103 -9.26580 -8.56216 -8.46059 -6.80916 -5.67667 -3.00926 0.47796 0.82973 2.40936 2.71701 3.38951 3.43324 3.47175 3.48510 3.81271 3.92938 4.15953 4.35753 4.43156 4.50427 4.60071 4.70110 4.81200 4.97412 4.99041 5.11366 5.12700 5.21321 5.30820 5.38260 5.42594 5.46855 5.50830 5.55735 5.56464 5.64107 5.73669 5.76919 5.80109 5.85958 5.93926 5.95679 6.10577 6.14219 6.26356 6.29182 6.45467 6.48052 6.52685 6.62796 7.14998 7.56587 7.59304 7.63201 7.64960 7.85063 7.91194 8.27725 9.24454 9.84457 10.49924 11.44162 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.002979 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.132068 B = 9397.897023 C = 9708.861263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.182 3.818 3 N -0.485 5.485 4 C 0.121 3.879 5 C -0.186 4.186 6 C -0.044 4.044 7 C -0.178 4.178 8 C 0.570 3.430 9 O -0.527 6.527 10 N -0.601 5.601 11 C 0.072 3.928 12 C 0.069 3.931 13 H 0.065 0.935 14 C -0.141 4.141 15 O -0.342 6.342 16 C 0.093 3.907 17 C -0.166 4.166 18 C 0.186 3.814 19 N -0.599 5.599 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.153 3.847 29 C 0.098 3.902 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.037 0.963 47 H 0.051 0.949 48 H 0.104 0.896 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.682 11.768 -10.834 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.044 3.956 3 N -0.195 5.195 4 C -0.037 4.037 5 C -0.205 4.205 6 C -0.070 4.070 7 C -0.184 4.184 8 C 0.357 3.643 9 O -0.404 6.404 10 N -0.334 5.334 11 C -0.051 4.051 12 C 0.010 3.990 13 H 0.083 0.917 14 C -0.199 4.199 15 O -0.261 6.261 16 C 0.051 3.949 17 C -0.205 4.205 18 C 0.062 3.938 19 N -0.325 5.325 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.026 3.974 29 C -0.025 4.025 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.122 0.878 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.642 12.244 -10.966 22.690 hybrid contribution 0.317 -1.131 0.526 1.287 sum 15.959 11.113 -10.439 22.072 Atomic orbital electron populations 1.21052 0.87942 1.05436 1.03834 1.21402 0.97396 0.86476 0.90325 1.67631 1.10029 1.28503 1.13303 1.22972 0.89389 0.98795 0.92516 1.22070 1.01791 0.92947 1.03723 1.21739 0.92748 0.99169 0.93375 1.20750 0.94790 0.94976 1.07848 1.18042 0.82339 0.82742 0.81194 1.90774 1.34018 1.78535 1.37034 1.48127 1.35114 1.19696 1.30422 1.22733 0.90140 1.02861 0.89339 1.22436 0.95042 0.88321 0.93161 0.91678 1.21689 0.96972 1.01870 0.99334 1.87932 1.46097 1.31726 1.60333 1.22414 0.86568 0.99363 0.86538 1.23377 0.97590 0.98198 1.01288 1.21096 0.96387 0.82409 0.93944 1.44404 1.52818 1.03466 1.31823 1.18995 1.22020 0.87461 1.06909 0.90434 1.24785 1.00110 0.96520 0.98989 1.69951 1.38689 1.15922 1.32429 0.86190 0.78486 0.80812 0.80202 1.21200 1.21662 1.21186 1.21327 0.91911 0.91887 0.92240 1.22232 0.97138 0.84766 0.98318 0.89889 0.89932 0.88429 0.82218 0.84048 0.84215 0.89071 0.90217 0.91382 0.91685 0.90916 0.92081 0.91618 0.93539 0.93905 0.93772 0.94518 0.93073 0.87788 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.87 36.01 0.36 -1.13 16 2 C 0.18 2.22 6.82 -82.17 -0.56 1.66 16 3 N -0.49 -5.52 10.26 -9.14 -0.09 -5.61 16 4 C 0.12 0.99 11.17 -17.47 -0.20 0.80 16 5 C -0.19 -1.29 10.10 -39.49 -0.40 -1.69 16 6 C -0.04 -0.38 7.62 -38.87 -0.30 -0.68 16 7 C -0.18 -2.09 4.88 -104.82 -0.51 -2.61 16 8 C 0.57 7.91 6.61 -12.33 -0.08 7.83 16 9 O -0.53 -8.83 14.59 5.32 0.08 -8.76 16 10 N -0.60 -7.93 2.95 -173.81 -0.51 -8.44 16 11 C 0.07 0.79 5.01 -3.53 -0.02 0.77 16 12 C 0.07 0.93 3.19 -26.59 -0.08 0.84 16 13 H 0.07 0.95 6.23 -51.92 -0.32 0.63 16 14 C -0.14 -1.53 9.57 37.16 0.36 -1.18 16 15 O -0.34 -6.06 9.93 -35.22 -0.35 -6.41 16 16 C 0.09 1.64 0.84 -89.65 -0.08 1.56 16 17 C -0.17 -3.20 5.87 -25.25 -0.15 -3.35 16 18 C 0.19 4.61 5.38 -2.96 -0.02 4.59 16 19 N -0.60 -15.43 3.40 -170.32 -0.58 -16.01 16 20 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 21 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.35 10.31 55.49 0.57 -26.78 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.15 3.17 6.42 -2.88 -0.02 3.15 16 29 C 0.10 1.45 5.28 -3.91 -0.02 1.43 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 1.31 5.54 -51.93 -0.29 1.03 16 33 H 0.16 0.81 8.06 -52.48 -0.42 0.38 16 34 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.14 0.95 7.46 -52.48 -0.39 0.55 16 36 H 0.09 0.83 4.94 -51.93 -0.26 0.58 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.11 6.07 -51.93 -0.32 0.80 16 42 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 43 H 0.05 1.29 7.39 -51.93 -0.38 0.90 16 44 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.04 0.73 7.99 -51.93 -0.42 0.31 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.10 1.63 6.90 -51.93 -0.36 1.27 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -33.89 381.94 -9.42 -43.31 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.30 Total: 0.48 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.96 Total: 5.19 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.61 Total: -56.84 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.27 Total: -15.16 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.89 -9.42 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.475 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds