Wall clock time and date at job start Wed Apr 1 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31700 * 119.71823 * 2 1 4 4 C 1.31917 * 121.88053 * 180.24799 * 3 2 1 5 5 C 1.38356 * 121.08270 * 359.76268 * 4 3 2 6 6 C 1.38357 * 119.29876 * 359.97438 * 5 4 3 7 7 C 1.39525 * 119.71782 * 179.74716 * 2 1 3 8 8 C 1.47832 * 120.55674 * 0.02747 * 7 2 1 9 9 O 1.21550 * 120.00780 * 54.00532 * 8 7 2 10 10 N 1.34778 * 120.00076 * 234.00633 * 8 7 2 11 11 C 1.47173 * 121.07219 * 355.77485 * 10 8 7 12 12 C 1.53273 * 108.56821 * 128.80980 * 11 10 8 13 13 H 1.09009 * 109.51252 * 292.99925 * 12 11 10 14 14 C 1.53004 * 109.51228 * 172.90295 * 12 11 10 15 15 O 1.43127 * 109.23455 * 52.97585 * 12 11 10 16 16 C 1.41885 * 114.36667 * 299.10823 * 15 12 11 17 17 C 1.54365 * 110.71551 * 296.73576 * 16 15 12 18 18 C 1.54465 * 102.86995 * 276.30025 * 17 16 15 19 19 N 1.47083 * 107.29225 * 338.49949 * 18 17 16 20 20 C 1.36933 * 125.62592 * 179.02416 * 19 18 17 21 21 H 1.08005 * 120.00178 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00271 * 0.02562 * 20 19 18 23 23 N 1.31610 * 119.99681 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00004 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47503 * 59.99673 * 24 22 20 26 26 H 1.48504 * 109.47197 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47147 * 299.99861 * 24 22 20 28 28 C 1.47566 * 108.74454 * 359.02039 * 19 18 17 29 29 C 1.47327 * 121.07970 * 175.79688 * 10 8 7 30 30 H 1.09006 * 109.46888 * 274.43840 * 1 2 3 31 31 H 1.08993 * 109.47085 * 34.43697 * 1 2 3 32 32 H 1.09000 * 109.46750 * 154.43732 * 1 2 3 33 33 H 1.08006 * 119.46331 * 179.74629 * 4 3 2 34 34 H 1.07999 * 120.35321 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.85190 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.61990 * 9.08536 * 11 10 8 37 37 H 1.09003 * 109.61762 * 248.53309 * 11 10 8 38 38 H 1.09002 * 109.46479 * 59.99929 * 14 12 11 39 39 H 1.08998 * 109.46621 * 299.99961 * 14 12 11 40 40 H 1.08996 * 109.46816 * 179.97438 * 14 12 11 41 41 H 1.09006 * 110.73470 * 34.64543 * 17 16 15 42 42 H 1.09002 * 110.73778 * 157.95392 * 17 16 15 43 43 H 1.09003 * 109.87744 * 97.91971 * 18 17 16 44 44 H 1.09000 * 109.88095 * 219.07202 * 18 17 16 45 45 H 0.97002 * 119.99905 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.38087 * 264.47881 * 28 19 18 47 47 H 1.09002 * 110.38326 * 142.12749 * 28 19 18 48 48 H 1.08997 * 109.67962 * 348.89159 * 29 10 8 49 49 H 1.09001 * 109.67667 * 109.43527 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4781 1.1936 -0.0048 5 6 4.2366 0.0364 -0.0053 6 6 3.5987 -1.1913 0.0000 7 6 2.1987 -1.2117 0.0053 8 6 1.4657 -2.4955 0.0104 9 8 0.6274 -2.7202 -0.8406 10 7 1.7268 -3.4169 0.9587 11 6 2.7997 -3.2093 1.9445 12 6 2.2250 -3.4382 3.3469 13 1 1.5005 -2.6564 3.5756 14 6 3.3572 -3.4024 4.3753 15 8 1.5807 -4.7156 3.3897 16 6 0.4969 -4.8551 2.4847 17 6 -0.6339 -3.8626 2.8297 18 6 -1.4179 -4.6048 3.9345 19 7 -1.1090 -6.0368 3.8030 20 6 -1.5911 -7.0340 4.6081 21 1 -1.3032 -8.0594 4.4289 22 6 -2.4498 -6.7270 5.6547 23 7 -2.8010 -5.4775 5.8728 24 14 -3.1069 -8.0873 6.7534 25 1 -1.9724 -8.7828 7.4125 26 1 -3.9963 -7.5015 7.7884 27 1 -3.8739 -9.0589 5.9332 28 6 -0.1938 -6.2215 2.6602 29 6 0.9479 -4.6647 1.0418 30 1 -0.3633 0.0795 1.0247 31 1 -0.3633 0.8475 -0.5811 32 1 -0.3633 -0.9271 -0.4434 33 1 3.9735 2.1533 -0.0088 34 1 5.3152 0.0909 -0.0097 35 1 4.1661 -2.1103 -0.0006 36 1 3.1770 -2.1898 1.8656 37 1 3.6080 -3.9170 1.7602 38 1 3.8502 -2.4308 4.3391 39 1 4.0802 -4.1854 4.1471 40 1 2.9477 -3.5648 5.3723 41 1 -0.2236 -2.9270 3.2099 42 1 -1.2678 -3.6825 1.9614 43 1 -1.1049 -4.2467 4.9153 44 1 -2.4876 -4.4427 3.8025 45 1 -3.4008 -5.2629 6.6043 46 1 -0.7551 -6.4810 1.7626 47 1 0.5428 -6.9929 2.8845 48 1 0.0764 -4.5974 0.3907 49 1 1.5699 -5.5065 0.7375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071202322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:17 Heat of formation + Delta-G solvation = -20.477232 kcal Electronic energy + Delta-G solvation = -31984.541061 eV Core-core repulsion = 27912.117800 eV Total energy + Delta-G solvation = -4072.423261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.24773 -41.14682 -39.71275 -38.00256 -35.98785 -34.85204 -34.01451 -33.55578 -32.89020 -31.13142 -30.15717 -28.86812 -27.71412 -27.28437 -25.92652 -24.72143 -23.36612 -23.03299 -22.06107 -21.30402 -20.33716 -18.97034 -18.60230 -18.10998 -17.79760 -17.34371 -17.07498 -16.76492 -16.42224 -15.82647 -15.81057 -15.65813 -15.38744 -15.11486 -15.03850 -14.54282 -14.39729 -14.06444 -14.03890 -13.79588 -13.61489 -13.48843 -13.21045 -13.18635 -13.12463 -13.02774 -12.98989 -12.81896 -12.73785 -12.29182 -12.09300 -12.04863 -11.86945 -11.76161 -11.54865 -11.21886 -10.95834 -10.81910 -10.70307 -10.47151 -9.98996 -9.61296 -8.92001 -7.84705 -5.20567 -0.24855 0.17252 1.38901 1.45395 1.49474 1.55412 1.73138 2.48969 2.58040 2.68870 3.16676 3.32041 3.34420 3.45172 3.54321 3.66161 3.78480 3.85177 3.88628 3.90060 4.00444 4.07396 4.15266 4.33087 4.36089 4.44626 4.49382 4.56304 4.57093 4.57893 4.60228 4.66103 4.72151 4.76103 4.82445 4.92749 5.00722 5.03173 5.06000 5.06676 5.09609 5.19036 5.29858 5.42476 5.56585 5.62386 5.69247 6.13792 6.16625 6.35500 6.86989 6.90741 7.08136 7.74967 8.39821 9.26019 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.002979 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.132068 B = 9397.897023 C = 9708.861263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.160 3.840 3 N -0.510 5.510 4 C 0.116 3.884 5 C -0.166 4.166 6 C -0.043 4.043 7 C -0.197 4.197 8 C 0.571 3.429 9 O -0.564 6.564 10 N -0.601 5.601 11 C 0.080 3.920 12 C 0.060 3.940 13 H 0.046 0.954 14 C -0.135 4.135 15 O -0.367 6.367 16 C 0.109 3.891 17 C -0.150 4.150 18 C 0.199 3.801 19 N -0.621 5.621 20 C -0.240 4.240 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.981 3.019 25 H -0.276 1.276 26 H -0.296 1.296 27 H -0.275 1.275 28 C 0.146 3.854 29 C 0.107 3.893 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.193 0.807 34 H 0.185 0.815 35 H 0.165 0.835 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.007 0.993 44 H 0.004 0.996 45 H 0.246 0.754 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.643 12.171 -11.783 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.022 3.978 3 N -0.219 5.219 4 C -0.041 4.041 5 C -0.185 4.185 6 C -0.069 4.069 7 C -0.202 4.202 8 C 0.359 3.641 9 O -0.444 6.444 10 N -0.333 5.333 11 C -0.042 4.042 12 C 0.002 3.998 13 H 0.064 0.936 14 C -0.192 4.192 15 O -0.287 6.287 16 C 0.068 3.932 17 C -0.189 4.189 18 C 0.074 3.926 19 N -0.347 5.347 20 C -0.369 4.369 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.809 3.191 25 H -0.202 1.202 26 H -0.222 1.222 27 H -0.201 1.201 28 C 0.021 3.979 29 C -0.016 4.016 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.210 0.790 34 H 0.202 0.798 35 H 0.182 0.818 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.646 12.641 -11.933 26.233 hybrid contribution -0.824 -1.173 0.816 1.649 sum 18.822 11.467 -11.118 24.686 Atomic orbital electron populations 1.20946 0.89070 1.04479 1.03508 1.21326 0.97200 0.87272 0.91995 1.67621 1.11915 1.28130 1.14281 1.23652 0.88445 1.01001 0.90977 1.22514 1.03713 0.91457 1.00797 1.22077 0.91269 1.01102 0.92409 1.20621 0.96235 0.93248 1.10130 1.18416 0.81798 0.83278 0.80559 1.90752 1.35707 1.79273 1.38640 1.48160 1.35345 1.18967 1.30785 1.22859 0.89630 1.05088 0.86648 1.22734 0.95277 0.85845 0.95922 0.93609 1.21708 0.96149 1.04333 0.97052 1.87892 1.45873 1.34185 1.60727 1.22093 0.86178 0.96398 0.88553 1.23175 0.97882 0.98447 0.99368 1.20736 0.94819 0.83092 0.93930 1.44690 1.53757 1.03313 1.32924 1.19444 1.21801 0.88471 1.07192 0.89638 1.25684 1.00845 0.98834 1.00718 1.70196 1.39344 1.17940 1.32794 0.85110 0.77832 0.78050 0.78081 1.20196 1.22183 1.20123 1.21535 0.91517 0.94010 0.90865 1.21977 0.97609 0.86549 0.95466 0.90226 0.89449 0.90501 0.79031 0.79804 0.81754 0.86666 0.87563 0.87943 0.90393 0.93259 0.91199 0.91202 0.97504 0.97741 0.94525 0.93208 0.92674 0.88909 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.87 71.24 0.70 -2.34 16 2 C 0.16 3.77 6.82 42.89 0.29 4.07 16 3 N -0.51 -10.66 10.26 -182.84 -1.88 -12.53 16 4 C 0.12 1.46 11.17 84.71 0.95 2.41 16 5 C -0.17 -1.44 10.10 22.33 0.23 -1.22 16 6 C -0.04 -0.56 7.62 22.73 0.17 -0.38 16 7 C -0.20 -4.25 4.88 -20.00 -0.10 -4.35 16 8 C 0.57 15.28 6.61 86.78 0.57 15.86 16 9 O -0.56 -19.14 14.59 -3.87 -0.06 -19.19 16 10 N -0.60 -14.76 2.95 -822.10 -2.42 -17.18 16 11 C 0.08 1.47 5.01 86.34 0.43 1.90 16 12 C 0.06 1.52 3.19 30.69 0.10 1.62 16 13 H 0.05 1.33 6.23 -2.38 -0.01 1.31 16 14 C -0.14 -2.60 9.57 71.98 0.69 -1.91 16 15 O -0.37 -12.77 9.93 -148.95 -1.48 -14.25 16 16 C 0.11 3.86 0.84 -10.17 -0.01 3.85 16 17 C -0.15 -6.02 5.87 31.56 0.19 -5.84 16 18 C 0.20 10.48 5.38 86.77 0.47 10.95 16 19 N -0.62 -33.13 3.40 -692.78 -2.36 -35.48 16 20 C -0.24 -13.84 10.28 84.03 0.86 -12.98 16 21 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 22 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 23 N -0.95 -59.33 10.31 21.65 0.22 -59.11 16 24 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 C 0.15 6.10 6.42 86.55 0.56 6.65 16 29 C 0.11 3.05 5.28 86.01 0.45 3.50 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.21 5.54 -2.39 -0.01 2.20 16 33 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 35 H 0.16 1.31 7.46 -2.91 -0.02 1.29 16 36 H 0.12 1.61 4.94 -2.39 -0.01 1.59 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 2.66 6.07 -2.38 -0.01 2.64 16 42 H 0.07 2.72 7.83 -2.39 -0.02 2.70 16 43 H 0.01 0.40 7.39 -2.39 -0.02 0.38 16 44 H 0.00 0.26 7.50 -2.39 -0.02 0.24 16 45 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.05 1.96 7.99 -2.39 -0.02 1.94 16 47 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.09 2.89 6.90 -2.39 -0.02 2.88 16 49 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -79.43 381.94 2.04 -77.39 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.96 Total: 13.23 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 7.02 Total: 18.25 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -6.43 Total: -124.31 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.54 Total: -33.44 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -79.43 2.04 -77.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.917 kcal (2) G-P(sol) polarization free energy of solvation -79.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds