Wall clock time and date at job start Wed Apr 1 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38174 * 119.55212 * 2 1 4 4 C 1.39793 * 118.99751 * 180.27142 * 3 2 1 5 5 C 1.48151 * 120.91987 * 179.77164 * 4 3 2 6 6 O 1.21521 * 120.00122 * 147.99528 * 5 4 3 7 7 N 1.34776 * 120.00448 * 327.99860 * 5 4 3 8 8 C 1.47165 * 121.05162 * 354.42890 * 7 5 4 9 9 C 1.53286 * 108.52360 * 231.10964 * 8 7 5 10 10 H 1.09004 * 109.50814 * 67.06690 * 9 8 7 11 11 C 1.53004 * 109.51074 * 187.16334 * 9 8 7 12 12 O 1.43094 * 109.23675 * 307.09406 * 9 8 7 13 13 C 1.42073 * 114.31181 * 61.18298 * 12 9 8 14 14 C 1.54511 * 110.33388 * 61.90926 * 13 12 9 15 15 C 1.55022 * 101.49769 * 83.96549 * 14 13 12 16 16 N 1.47475 * 104.91320 * 36.36477 * 15 14 13 17 17 C 1.36946 * 125.66015 * 155.97515 * 16 15 14 18 18 H 1.08000 * 119.99816 * 4.97053 * 17 16 15 19 19 C 1.38805 * 120.00008 * 184.97246 * 17 16 15 20 20 N 1.31618 * 120.00214 * 352.21002 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 172.20821 * 19 17 16 22 22 H 1.48499 * 109.46840 * 94.98678 * 21 19 17 23 23 H 1.48502 * 109.47107 * 214.98009 * 21 19 17 24 24 H 1.48494 * 109.47108 * 334.98559 * 21 19 17 25 25 C 1.47177 * 108.68281 * 335.97032 * 16 15 14 26 26 C 1.47299 * 121.06202 * 174.41027 * 7 5 4 27 27 C 1.39831 * 118.15796 * 359.49964 * 4 3 2 28 28 C 1.38122 * 119.00269 * 0.25313 * 27 4 3 29 29 N 1.31791 * 119.55197 * 179.75718 * 2 1 3 30 30 H 1.08998 * 109.46910 * 270.24264 * 1 2 3 31 31 H 1.09001 * 109.46818 * 30.23999 * 1 2 3 32 32 H 1.08993 * 109.46933 * 150.23955 * 1 2 3 33 33 H 1.08002 * 120.49927 * 0.04394 * 3 2 1 34 34 H 1.08996 * 109.63002 * 350.81764 * 8 7 5 35 35 H 1.08996 * 109.62588 * 111.20977 * 8 7 5 36 36 H 1.08997 * 109.46609 * 60.00250 * 11 9 8 37 37 H 1.09001 * 109.47138 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.47155 * 300.00156 * 11 9 8 39 39 H 1.09004 * 111.01825 * 202.01890 * 14 13 12 40 40 H 1.08994 * 111.02111 * 325.87632 * 14 13 12 41 41 H 1.09003 * 110.34648 * 155.22003 * 15 14 13 42 42 H 1.08999 * 110.35214 * 277.50031 * 15 14 13 43 43 H 0.96997 * 120.00419 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.91555 * 242.16037 * 25 16 15 45 45 H 1.08996 * 109.91625 * 120.88101 * 25 16 15 46 46 H 1.08997 * 109.67999 * 10.89089 * 26 7 5 47 47 H 1.08995 * 109.68008 * 250.34307 * 26 7 5 48 48 H 1.08007 * 120.50375 * 180.22748 * 27 4 3 49 49 H 1.08002 * 119.55257 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0058 5 6 4.3599 2.4520 -0.0111 6 8 5.4406 2.5052 0.5421 7 7 3.8651 3.5426 -0.6294 8 6 2.6187 3.4733 -1.4088 9 6 2.8749 4.0818 -2.7921 10 1 3.5680 3.4484 -3.3458 11 6 1.5541 4.1851 -3.5576 12 8 3.4399 5.3872 -2.6356 13 6 4.6876 5.4069 -1.9565 14 6 5.7437 4.6057 -2.7503 15 6 6.2337 5.6658 -3.7698 16 7 6.2239 6.9397 -3.0270 17 6 6.9806 8.0421 -3.3227 18 1 7.5970 8.0519 -4.2096 19 6 6.9555 9.1469 -2.4827 20 7 6.0937 9.1988 -1.4893 21 14 8.1450 10.5599 -2.7622 22 1 7.4838 11.6092 -3.5789 23 1 8.5491 11.1330 -1.4532 24 1 9.3473 10.0609 -3.4766 25 6 5.2660 6.8298 -1.9151 26 6 4.5543 4.8417 -0.5461 27 6 4.2343 -0.0507 -0.0006 28 6 3.4742 -1.2039 0.0046 29 7 2.1571 -1.1465 0.0049 30 1 -0.3633 0.0044 1.0276 31 1 -0.3633 0.8878 -0.5176 32 1 -0.3633 -0.8921 -0.5101 33 1 1.6494 2.1378 0.0007 34 1 2.3122 2.4330 -1.5175 35 1 1.8359 4.0342 -0.8982 36 1 0.8623 4.8200 -3.0042 37 1 1.7371 4.6175 -4.5413 38 1 1.1222 3.1909 -3.6727 39 1 6.5576 4.2817 -2.1015 40 1 5.2889 3.7552 -3.2579 41 1 7.2437 5.4304 -4.1055 42 1 5.5532 5.7172 -4.6197 43 1 6.0764 9.9706 -0.9021 44 1 4.4660 7.5595 -2.0407 45 1 5.7772 6.9952 -0.9668 46 1 5.5439 4.7050 -0.1104 47 1 3.9727 5.5269 0.0705 48 1 5.3130 -0.1053 -0.0011 49 1 3.9654 -2.1657 0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071220572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:22 Heat of formation + Delta-G solvation = 7.785346 kcal Electronic energy + Delta-G solvation = -31675.893584 eV Core-core repulsion = 27604.695880 eV Total energy + Delta-G solvation = -4071.197704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.26273 -40.09384 -38.61752 -36.47150 -34.84058 -33.44399 -33.19510 -32.55932 -31.60749 -29.38684 -28.30515 -27.99341 -26.74899 -26.11751 -24.47017 -23.74450 -22.65846 -21.96045 -20.23755 -19.86988 -19.12901 -17.65983 -17.16134 -16.92076 -16.60658 -16.43737 -15.76517 -15.44071 -15.16430 -14.86302 -14.67675 -14.46933 -14.07723 -13.94444 -13.74915 -13.35296 -13.31983 -13.05806 -12.77510 -12.66236 -12.49740 -12.40268 -12.30577 -12.15950 -11.91391 -11.73042 -11.56135 -10.97669 -10.89674 -10.79057 -10.65076 -10.48252 -10.39967 -10.15856 -10.07988 -10.01857 -9.74953 -9.61389 -9.49671 -9.27175 -8.62523 -8.43155 -6.84711 -5.74362 -3.05007 0.47364 0.70337 2.56442 2.72588 3.41029 3.43299 3.46637 3.48749 3.87020 3.90527 4.02080 4.37207 4.49794 4.51593 4.63743 4.71919 4.82364 4.98855 5.02317 5.12557 5.14350 5.15218 5.22385 5.25386 5.28628 5.42155 5.44384 5.51083 5.55860 5.56765 5.67788 5.69643 5.77429 5.80240 5.87456 5.98607 6.05360 6.09369 6.23214 6.27608 6.31970 6.53580 6.63069 6.83660 7.19422 7.25474 7.49252 7.57374 7.74930 7.82482 7.92732 8.21953 9.19366 9.80365 10.46709 11.39276 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002831 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.927851 B = 9886.539645 C =10419.730614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.123 3.877 3 C -0.151 4.151 4 C -0.075 4.075 5 C 0.557 3.443 6 O -0.525 6.525 7 N -0.601 5.601 8 C 0.062 3.938 9 C 0.066 3.934 10 H 0.063 0.937 11 C -0.141 4.141 12 O -0.349 6.349 13 C 0.081 3.919 14 C -0.154 4.154 15 C 0.140 3.860 16 N -0.604 5.604 17 C -0.226 4.226 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.200 3.800 26 C 0.100 3.900 27 C -0.127 4.127 28 C 0.103 3.897 29 N -0.473 5.473 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.020 0.980 43 H 0.253 0.747 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.146 0.854 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.707 -19.411 1.697 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.014 4.014 3 C -0.171 4.171 4 C -0.086 4.086 5 C 0.345 3.655 6 O -0.401 6.401 7 N -0.334 5.334 8 C -0.060 4.060 9 C 0.007 3.993 10 H 0.081 0.919 11 C -0.199 4.199 12 O -0.268 6.268 13 C 0.040 3.960 14 C -0.193 4.193 15 C 0.014 3.986 16 N -0.331 5.331 17 C -0.354 4.354 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.074 3.926 26 C -0.022 4.022 27 C -0.147 4.147 28 C -0.054 4.054 29 N -0.184 5.184 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.123 0.877 47 H 0.099 0.901 48 H 0.164 0.836 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.627 -19.736 2.028 23.517 hybrid contribution 1.211 1.322 -0.005 1.792 sum -11.416 -18.414 2.023 21.760 Atomic orbital electron populations 1.20748 0.88247 1.03812 1.03421 1.21297 0.97294 0.87800 0.95018 1.22467 0.93596 1.00335 1.00683 1.20379 0.93909 0.94375 0.99923 1.18218 0.85245 0.82848 0.79223 1.90810 1.20493 1.83870 1.44940 1.48115 1.25351 1.09711 1.50180 1.23076 0.86696 1.02981 0.93281 1.22459 0.96061 0.86943 0.93787 0.91906 1.21699 0.95073 1.02074 1.01058 1.88002 1.35582 1.25767 1.77429 1.22805 0.83511 1.00561 0.89074 1.23241 0.98770 0.97716 0.99560 1.21517 0.97749 0.85997 0.93372 1.44462 1.47022 1.10106 1.31482 1.19054 1.18303 0.91724 1.06322 0.90280 1.24800 0.99367 0.98458 0.97771 1.69907 1.36892 1.30386 1.19822 0.86103 0.80670 0.82095 0.76943 1.21692 1.21608 1.20657 1.21013 0.92149 0.86677 0.92723 1.22288 0.99601 0.81988 0.98292 1.22276 1.02344 0.91671 0.98422 1.22767 0.89066 0.98431 0.95156 1.67402 1.10317 1.29429 1.11214 0.90143 0.90386 0.90176 0.83411 0.88234 0.90024 0.91499 0.91168 0.91354 0.90794 0.92033 0.94199 0.96191 0.93632 0.92504 0.91653 0.87697 0.90140 0.83648 0.81905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.16 36.01 0.37 -0.25 16 2 C 0.12 1.10 6.78 -82.63 -0.56 0.54 16 3 C -0.15 -1.41 7.15 -39.02 -0.28 -1.69 16 4 C -0.07 -0.87 5.41 -104.65 -0.57 -1.44 16 5 C 0.56 8.16 7.48 -12.19 -0.09 8.07 16 6 O -0.52 -9.50 16.32 5.35 0.09 -9.41 16 7 N -0.60 -8.45 2.91 -173.63 -0.51 -8.95 16 8 C 0.06 0.69 4.22 -3.53 -0.01 0.67 16 9 C 0.07 0.85 3.17 -26.58 -0.08 0.77 16 10 H 0.06 0.84 6.13 -51.93 -0.32 0.52 16 11 C -0.14 -1.40 9.57 37.16 0.36 -1.05 16 12 O -0.35 -6.20 9.87 -35.23 -0.35 -6.55 16 13 C 0.08 1.54 0.83 -89.73 -0.07 1.46 16 14 C -0.15 -2.86 5.91 -24.87 -0.15 -3.00 16 15 C 0.14 3.00 7.23 -2.44 -0.02 2.99 16 16 N -0.60 -15.63 3.40 -170.25 -0.58 -16.21 16 17 C -0.23 -6.34 10.27 -15.06 -0.15 -6.49 16 18 H 0.08 2.15 7.84 -52.49 -0.41 1.73 16 19 C -0.01 -0.22 5.47 -17.43 -0.10 -0.32 16 20 N -0.92 -26.86 10.38 55.49 0.58 -26.29 16 21 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.20 4.82 4.75 -3.33 -0.02 4.80 16 26 C 0.10 1.69 5.18 -3.85 -0.02 1.67 16 27 C -0.13 -1.32 9.71 -39.03 -0.38 -1.69 16 28 C 0.10 0.93 11.17 -17.59 -0.20 0.73 16 29 N -0.47 -4.77 10.25 -9.52 -0.10 -4.87 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.15 1.14 5.76 -52.49 -0.30 0.84 16 34 H 0.10 0.89 4.49 -51.93 -0.23 0.66 16 35 H 0.08 0.80 7.98 -51.93 -0.41 0.39 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 40 H 0.06 1.01 5.98 -51.93 -0.31 0.70 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.06 1.55 7.53 -51.93 -0.39 1.16 16 45 H 0.07 1.71 6.96 -51.93 -0.36 1.35 16 46 H 0.10 1.94 6.87 -51.93 -0.36 1.58 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 48 H 0.15 1.43 8.02 -52.48 -0.42 1.01 16 49 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -33.61 383.48 -9.38 -42.99 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.29 Total: 0.60 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.97 Total: 5.78 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.61 Total: -56.32 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.26 Total: -15.96 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.61 -9.38 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071220572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.772 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds