Wall clock time and date at job start Wed Apr 1 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38174 * 119.55212 * 2 1 4 4 C 1.39793 * 118.99751 * 180.27142 * 3 2 1 5 5 C 1.48151 * 120.91987 * 179.77164 * 4 3 2 6 6 O 1.21521 * 120.00122 * 147.99528 * 5 4 3 7 7 N 1.34776 * 120.00448 * 327.99860 * 5 4 3 8 8 C 1.47165 * 121.05162 * 354.42890 * 7 5 4 9 9 C 1.53286 * 108.52360 * 231.10964 * 8 7 5 10 10 H 1.09004 * 109.50814 * 67.06690 * 9 8 7 11 11 C 1.53004 * 109.51074 * 187.16334 * 9 8 7 12 12 O 1.43094 * 109.23675 * 307.09406 * 9 8 7 13 13 C 1.42073 * 114.31181 * 61.18298 * 12 9 8 14 14 C 1.54511 * 110.33388 * 61.90926 * 13 12 9 15 15 C 1.55022 * 101.49769 * 83.96549 * 14 13 12 16 16 N 1.47475 * 104.91320 * 36.36477 * 15 14 13 17 17 C 1.36946 * 125.66015 * 155.97515 * 16 15 14 18 18 H 1.08000 * 119.99816 * 4.97053 * 17 16 15 19 19 C 1.38805 * 120.00008 * 184.97246 * 17 16 15 20 20 N 1.31618 * 120.00214 * 352.21002 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 172.20821 * 19 17 16 22 22 H 1.48499 * 109.46840 * 94.98678 * 21 19 17 23 23 H 1.48502 * 109.47107 * 214.98009 * 21 19 17 24 24 H 1.48494 * 109.47108 * 334.98559 * 21 19 17 25 25 C 1.47177 * 108.68281 * 335.97032 * 16 15 14 26 26 C 1.47299 * 121.06202 * 174.41027 * 7 5 4 27 27 C 1.39831 * 118.15796 * 359.49964 * 4 3 2 28 28 C 1.38122 * 119.00269 * 0.25313 * 27 4 3 29 29 N 1.31791 * 119.55197 * 179.75718 * 2 1 3 30 30 H 1.08998 * 109.46910 * 270.24264 * 1 2 3 31 31 H 1.09001 * 109.46818 * 30.23999 * 1 2 3 32 32 H 1.08993 * 109.46933 * 150.23955 * 1 2 3 33 33 H 1.08002 * 120.49927 * 0.04394 * 3 2 1 34 34 H 1.08996 * 109.63002 * 350.81764 * 8 7 5 35 35 H 1.08996 * 109.62588 * 111.20977 * 8 7 5 36 36 H 1.08997 * 109.46609 * 60.00250 * 11 9 8 37 37 H 1.09001 * 109.47138 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.47155 * 300.00156 * 11 9 8 39 39 H 1.09004 * 111.01825 * 202.01890 * 14 13 12 40 40 H 1.08994 * 111.02111 * 325.87632 * 14 13 12 41 41 H 1.09003 * 110.34648 * 155.22003 * 15 14 13 42 42 H 1.08999 * 110.35214 * 277.50031 * 15 14 13 43 43 H 0.96997 * 120.00419 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.91555 * 242.16037 * 25 16 15 45 45 H 1.08996 * 109.91625 * 120.88101 * 25 16 15 46 46 H 1.08997 * 109.67999 * 10.89089 * 26 7 5 47 47 H 1.08995 * 109.68008 * 250.34307 * 26 7 5 48 48 H 1.08007 * 120.50375 * 180.22748 * 27 4 3 49 49 H 1.08002 * 119.55257 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0058 5 6 4.3599 2.4520 -0.0111 6 8 5.4406 2.5052 0.5421 7 7 3.8651 3.5426 -0.6294 8 6 2.6187 3.4733 -1.4088 9 6 2.8749 4.0818 -2.7921 10 1 3.5680 3.4484 -3.3458 11 6 1.5541 4.1851 -3.5576 12 8 3.4399 5.3872 -2.6356 13 6 4.6876 5.4069 -1.9565 14 6 5.7437 4.6057 -2.7503 15 6 6.2337 5.6658 -3.7698 16 7 6.2239 6.9397 -3.0270 17 6 6.9806 8.0421 -3.3227 18 1 7.5970 8.0519 -4.2096 19 6 6.9555 9.1469 -2.4827 20 7 6.0937 9.1988 -1.4893 21 14 8.1450 10.5599 -2.7622 22 1 7.4838 11.6092 -3.5789 23 1 8.5491 11.1330 -1.4532 24 1 9.3473 10.0609 -3.4766 25 6 5.2660 6.8298 -1.9151 26 6 4.5543 4.8417 -0.5461 27 6 4.2343 -0.0507 -0.0006 28 6 3.4742 -1.2039 0.0046 29 7 2.1571 -1.1465 0.0049 30 1 -0.3633 0.0044 1.0276 31 1 -0.3633 0.8878 -0.5176 32 1 -0.3633 -0.8921 -0.5101 33 1 1.6494 2.1378 0.0007 34 1 2.3122 2.4330 -1.5175 35 1 1.8359 4.0342 -0.8982 36 1 0.8623 4.8200 -3.0042 37 1 1.7371 4.6175 -4.5413 38 1 1.1222 3.1909 -3.6727 39 1 6.5576 4.2817 -2.1015 40 1 5.2889 3.7552 -3.2579 41 1 7.2437 5.4304 -4.1055 42 1 5.5532 5.7172 -4.6197 43 1 6.0764 9.9706 -0.9021 44 1 4.4660 7.5595 -2.0407 45 1 5.7772 6.9952 -0.9668 46 1 5.5439 4.7050 -0.1104 47 1 3.9727 5.5269 0.0705 48 1 5.3130 -0.1053 -0.0011 49 1 3.9654 -2.1657 0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071220572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:21 Heat of formation + Delta-G solvation = -14.301566 kcal Electronic energy + Delta-G solvation = -31676.851344 eV Core-core repulsion = 27604.695880 eV Total energy + Delta-G solvation = -4072.155464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.29486 -41.15272 -39.84054 -38.04113 -36.09497 -34.79996 -34.06093 -33.64592 -33.04760 -30.93071 -29.96772 -28.69960 -27.79587 -27.57396 -25.97682 -24.84407 -23.59896 -23.15241 -22.00527 -21.06851 -20.35169 -18.96190 -18.65096 -18.19893 -17.83176 -17.26675 -17.00132 -16.64378 -16.37671 -16.03846 -15.96787 -15.73338 -15.34728 -15.16956 -14.85095 -14.69715 -14.39642 -14.38256 -14.11806 -13.76084 -13.54141 -13.33073 -13.20672 -13.14692 -13.04774 -12.97269 -12.76408 -12.72231 -12.69249 -12.30107 -12.16893 -12.07688 -11.89345 -11.75804 -11.68189 -11.32846 -10.95119 -10.92874 -10.74852 -10.47820 -9.94937 -9.66935 -8.94737 -7.89310 -5.23189 -0.35626 0.01815 1.45387 1.47385 1.48380 1.56933 1.64085 2.46514 2.61109 2.69894 3.08002 3.30344 3.32888 3.41427 3.54560 3.68742 3.71078 3.85045 3.85190 3.92071 3.99107 4.01360 4.12611 4.28238 4.35163 4.41302 4.43397 4.51733 4.57292 4.61168 4.66204 4.69391 4.82413 4.85293 4.85894 4.89917 4.94823 5.00878 5.06170 5.10013 5.21827 5.24074 5.32446 5.38600 5.43002 5.61338 5.64492 6.09553 6.14330 6.36690 6.79922 6.89092 7.05484 7.71490 8.37586 9.22875 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002831 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.927851 B = 9886.539645 C =10419.730614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.124 3.876 3 C -0.147 4.147 4 C -0.090 4.090 5 C 0.557 3.443 6 O -0.569 6.569 7 N -0.598 5.598 8 C 0.064 3.936 9 C 0.057 3.943 10 H 0.061 0.939 11 C -0.136 4.136 12 O -0.372 6.372 13 C 0.099 3.901 14 C -0.139 4.139 15 C 0.136 3.864 16 N -0.626 5.626 17 C -0.245 4.245 18 H 0.083 0.917 19 C -0.063 4.063 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.210 3.790 26 C 0.109 3.891 27 C -0.137 4.137 28 C 0.107 3.893 29 N -0.488 5.488 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.168 0.832 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.023 0.977 43 H 0.249 0.751 44 H 0.017 0.983 45 H 0.033 0.967 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 -21.628 0.966 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.013 4.013 3 C -0.167 4.167 4 C -0.101 4.101 5 C 0.346 3.654 6 O -0.449 6.449 7 N -0.330 5.330 8 C -0.057 4.057 9 C -0.001 4.001 10 H 0.079 0.921 11 C -0.193 4.193 12 O -0.291 6.291 13 C 0.058 3.942 14 C -0.177 4.177 15 C 0.011 3.989 16 N -0.353 5.353 17 C -0.374 4.374 18 H 0.101 0.899 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.194 1.194 25 C 0.085 3.915 26 C -0.014 4.014 27 C -0.157 4.157 28 C -0.049 4.049 29 N -0.199 5.199 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.185 0.815 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.035 0.965 45 H 0.051 0.949 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.161 0.839 49 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.684 -21.992 1.259 26.474 hybrid contribution 1.766 1.940 0.179 2.630 sum -12.918 -20.052 1.437 23.896 Atomic orbital electron populations 1.20878 0.85876 1.05114 1.04352 1.21815 0.98793 0.87187 0.93537 1.22620 0.92432 1.01483 1.00118 1.20212 0.94808 0.92942 1.02175 1.18721 0.84837 0.83638 0.78168 1.90784 1.22635 1.84641 1.46806 1.48110 1.26029 1.08385 1.50440 1.23334 0.85600 1.04977 0.91833 1.22855 0.97241 0.84615 0.95356 0.92099 1.21737 0.93334 1.04413 0.99820 1.87956 1.34635 1.29229 1.77326 1.22254 0.84381 0.97042 0.90518 1.23113 0.98408 0.97589 0.98596 1.21657 0.98261 0.85176 0.93817 1.44785 1.47125 1.11121 1.32256 1.19440 1.18612 0.92718 1.06611 0.89887 1.25662 1.01007 1.01141 0.97813 1.70133 1.38177 1.30835 1.20595 0.85052 0.78774 0.78813 0.76620 1.21284 1.21880 1.19379 1.20628 0.90577 0.89318 0.90989 1.21896 0.99066 0.83685 0.96741 1.22371 1.02521 0.91870 0.98961 1.23164 0.88867 0.99019 0.93860 1.67512 1.10666 1.30121 1.11569 0.89280 0.88059 0.89951 0.81511 0.85254 0.88052 0.91053 0.92322 0.87549 0.91608 0.89280 0.93648 0.95886 0.94161 0.96522 0.94854 0.89845 0.90168 0.83909 0.79253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.16 71.24 0.72 -0.07 16 2 C 0.12 1.79 6.78 42.55 0.29 2.07 16 3 C -0.15 -2.26 7.15 22.63 0.16 -2.10 16 4 C -0.09 -1.94 5.41 -19.88 -0.11 -2.05 16 5 C 0.56 16.00 7.48 86.88 0.65 16.65 16 6 O -0.57 -21.13 16.32 -3.78 -0.06 -21.19 16 7 N -0.60 -16.25 2.91 -821.52 -2.39 -18.64 16 8 C 0.06 1.22 4.22 86.35 0.36 1.58 16 9 C 0.06 1.34 3.17 30.69 0.10 1.43 16 10 H 0.06 1.46 6.13 -2.39 -0.01 1.44 16 11 C -0.14 -2.24 9.57 71.98 0.69 -1.55 16 12 O -0.37 -13.10 9.87 -148.98 -1.47 -14.57 16 13 C 0.10 3.84 0.83 -10.22 -0.01 3.83 16 14 C -0.14 -5.15 5.91 31.80 0.19 -4.96 16 15 C 0.14 5.92 7.23 86.89 0.63 6.54 16 16 N -0.63 -33.62 3.40 -692.56 -2.36 -35.97 16 17 C -0.25 -14.15 10.27 84.03 0.86 -13.29 16 18 H 0.08 4.58 7.84 -2.91 -0.02 4.56 16 19 C -0.06 -3.65 5.47 84.86 0.46 -3.19 16 20 N -0.95 -57.70 10.38 21.65 0.22 -57.47 16 21 Si 0.98 46.52 29.56 68.60 2.03 48.54 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 C 0.21 10.75 4.75 86.47 0.41 11.16 16 26 C 0.11 3.80 5.18 86.07 0.45 4.25 16 27 C -0.14 -2.64 9.71 22.63 0.22 -2.42 16 28 C 0.11 1.69 11.17 84.66 0.95 2.63 16 29 N -0.49 -8.40 10.25 -184.04 -1.89 -10.29 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.10 0.31 8.08 -2.39 -0.02 0.29 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.17 1.86 5.76 -2.91 -0.02 1.84 16 34 H 0.13 1.76 4.49 -2.39 -0.01 1.75 16 35 H 0.10 1.62 7.98 -2.39 -0.02 1.60 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 2.56 7.86 -2.38 -0.02 2.54 16 40 H 0.09 2.81 5.98 -2.39 -0.01 2.79 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.02 0.97 7.53 -2.39 -0.02 0.95 16 45 H 0.03 1.88 6.96 -2.39 -0.02 1.87 16 46 H 0.08 3.27 6.87 -2.39 -0.02 3.25 16 47 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.14 2.76 8.02 -2.91 -0.02 2.74 16 49 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -77.17 383.48 2.07 -75.09 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.96 Total: 13.97 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 7.03 Total: 20.52 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -6.41 Total: -122.37 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.53 Total: -35.76 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -77.17 2.07 -75.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071220572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.792 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds