Wall clock time and date at job start Wed Apr 1 2020 04:54:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38622 * 120.32561 * 2 1
4 4 C 1.38592 * 118.49081 * 179.70557 * 3 2 1
5 5 C 1.39315 * 119.05412 * 0.51341 * 4 3 2
6 6 C 1.48163 * 119.72013 * 179.74833 * 5 4 3
7 7 O 1.21512 * 120.00157 * 22.75496 * 6 5 4
8 8 N 1.34782 * 120.00032 * 202.74398 * 6 5 4
9 9 C 1.46986 * 120.71723 * 358.67616 * 8 6 5
10 10 C 1.53157 * 108.43812 * 125.42386 * 9 8 6
11 11 C 1.52506 * 109.79423 * 54.53489 * 10 9 8
12 12 H 1.09008 * 108.93774 * 180.32776 * 11 10 9
13 13 O 1.42684 * 110.62657 * 61.29082 * 11 10 9
14 14 C 1.43064 * 113.88185 * 174.66104 * 13 11 10
15 15 C 1.53232 * 109.44884 * 61.64305 * 14 13 11
16 16 N 1.47168 * 108.69199 * 308.41076 * 15 14 13
17 17 C 1.36940 * 121.22767 * 230.93627 * 16 15 14
18 18 H 1.07993 * 120.00326 * 158.20760 * 17 16 15
19 19 C 1.38815 * 119.99497 * 338.20150 * 17 16 15
20 20 N 1.31613 * 120.00365 * 337.33978 * 19 17 16
21 21 Si 1.86801 * 119.99839 * 157.33471 * 19 17 16
22 22 H 1.48494 * 109.47202 * 94.67882 * 21 19 17
23 23 H 1.48494 * 109.47501 * 214.68265 * 21 19 17
24 24 H 1.48508 * 109.46931 * 334.67943 * 21 19 17
25 25 C 1.47593 * 117.55370 * 50.95596 * 16 15 14
26 26 H 1.08998 * 110.31786 * 186.67677 * 25 16 15
27 27 C 1.46790 * 120.72145 * 178.64387 * 8 6 5
28 28 N 1.32716 * 120.55541 * 359.48101 * 5 4 3
29 29 C 1.31525 * 121.63933 * 0.26742 * 28 5 4
30 30 C 1.50702 * 119.54523 * 180.02562 * 29 28 5
31 31 H 1.08995 * 109.46567 * 270.02301 * 1 2 3
32 32 H 1.09006 * 109.46580 * 30.01757 * 1 2 3
33 33 H 1.08997 * 109.47053 * 150.01787 * 1 2 3
34 34 H 1.08006 * 120.75753 * 359.97438 * 3 2 1
35 35 H 1.07999 * 120.47709 * 180.28611 * 4 3 2
36 36 H 1.08998 * 109.64833 * 5.73492 * 9 8 6
37 37 H 1.09002 * 109.81449 * 245.20550 * 9 8 6
38 38 H 1.09001 * 109.41735 * 174.62833 * 10 9 8
39 39 H 1.08994 * 109.42022 * 294.43408 * 10 9 8
40 40 H 1.08994 * 109.47687 * 301.64683 * 14 13 11
41 41 H 1.09004 * 109.48317 * 181.63651 * 14 13 11
42 42 H 1.09005 * 109.59925 * 188.64974 * 15 14 13
43 43 H 1.08994 * 109.60516 * 68.17509 * 15 14 13
44 44 H 0.97006 * 120.00328 * 180.02562 * 20 19 17
45 45 H 1.09001 * 109.52025 * 354.22771 * 27 8 6
46 46 H 1.08994 * 109.51825 * 114.40987 * 27 8 6
47 47 H 1.09000 * 109.47332 * 90.00365 * 30 29 28
48 48 H 1.09004 * 109.47290 * 210.00258 * 30 29 28
49 49 H 1.09000 * 109.47454 * 330.00428 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2070 1.1965 0.0000
4 6 3.5922 1.1522 0.0063
5 6 4.2294 -0.0867 0.0014
6 6 5.7097 -0.1513 0.0023
7 8 6.3586 0.7899 0.4140
8 7 6.3364 -1.2542 -0.4533
9 6 5.5668 -2.4131 -0.9276
10 6 6.0272 -2.7517 -2.3485
11 6 7.5388 -2.9532 -2.3673
12 1 7.8519 -3.1874 -3.3848
13 8 7.9116 -4.0394 -1.5205
14 6 9.3028 -4.3680 -1.5786
15 6 10.1308 -3.1664 -1.1110
16 7 9.7020 -1.9766 -1.8636
17 6 10.6105 -1.1735 -2.4998
18 1 10.2929 -0.5373 -3.3126
19 6 11.9398 -1.1771 -2.0999
20 7 12.2606 -1.5701 -0.8854
21 14 13.2733 -0.6242 -3.2854
22 1 13.5712 0.8130 -3.0601
23 1 14.5022 -1.4261 -3.0572
24 1 12.8067 -0.8201 -4.6816
25 6 8.2567 -1.6805 -1.9072
26 1 8.0606 -0.8511 -2.5866
27 6 7.8022 -1.3236 -0.4871
28 7 3.5218 -1.2094 0.0013
29 6 2.2066 -1.1960 0.0004
30 6 1.4501 -2.4994 0.0009
31 1 -0.3632 0.0004 1.0276
32 1 -0.3633 0.8899 -0.5142
33 1 -0.3633 -0.8901 -0.5135
34 1 1.6847 2.1419 -0.0004
35 1 4.1694 2.0649 0.0111
36 1 4.5044 -2.1694 -0.9350
37 1 5.7423 -3.2664 -0.2725
38 1 5.5357 -3.6662 -2.6805
39 1 5.7622 -1.9348 -3.0197
40 1 9.5744 -4.6196 -2.6037
41 1 9.5023 -5.2211 -0.9300
42 1 11.1879 -3.3558 -1.2976
43 1 9.9688 -3.0030 -0.0456
44 1 13.1895 -1.5723 -0.6058
45 1 8.2193 -0.3574 -0.2032
46 1 8.1467 -2.0887 0.2086
47 1 1.2671 -2.8129 1.0287
48 1 0.4983 -2.3674 -0.5136
49 1 2.0378 -3.2608 -0.5119
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001074300544.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:59
Heat of formation + Delta-G solvation = 4.118881 kcal
Electronic energy + Delta-G solvation = -31649.217689 eV
Core-core repulsion = 27577.860996 eV
Total energy + Delta-G solvation = -4071.356693 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.04088 -39.64259 -38.34582 -35.73772 -34.63243 -34.19801 -33.27749 -31.64882
-31.44062 -29.49281 -28.68447 -27.92534 -27.10122 -24.90986 -23.83778 -23.07677
-22.84767 -22.03077 -21.34217 -19.88214 -18.37212 -17.50791 -16.88793 -16.64483
-15.94771 -15.45491 -15.40964 -15.31053 -15.05687 -14.75139 -14.49030 -14.34151
-14.04183 -13.74942 -13.54403 -13.41863 -13.22009 -13.09821 -13.00382 -12.72189
-12.53212 -12.37418 -12.21813 -12.11300 -11.86959 -11.70777 -11.27067 -11.05391
-10.92431 -10.73219 -10.58653 -10.28208 -10.18499 -10.07179 -9.90679 -9.89034
-9.59863 -9.02038 -9.00431 -8.89451 -8.53283 -8.13651 -6.79027 -5.85217
-3.21774 0.54455 0.97746 2.80712 3.22579 3.36168 3.43691 3.46457
3.64192 3.98026 4.36079 4.39032 4.45032 4.52477 4.55713 4.66367
4.99373 5.11211 5.16285 5.25599 5.26777 5.31279 5.32811 5.36359
5.38508 5.49360 5.56499 5.66618 5.75305 5.77814 5.82119 5.87687
5.95982 6.06763 6.09050 6.15393 6.18916 6.31276 6.37027 6.39645
6.47026 6.59557 6.75747 6.78553 7.04404 7.11378 7.48854 7.55521
7.73288 7.81819 7.94432 8.28821 8.43964 9.09654 9.73417 10.29293
11.22714
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.019209 B = 0.002968 C = 0.002715
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1457.294427 B = 9431.511403 C =10311.191215
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.123 4.123
3 C -0.079 4.079
4 C -0.116 4.116
5 C 0.091 3.909
6 C 0.561 3.439
7 O -0.538 6.538
8 N -0.580 5.580
9 C 0.081 3.919
10 C -0.124 4.124
11 C 0.082 3.918
12 H 0.050 0.950
13 O -0.386 6.386
14 C 0.040 3.960
15 C 0.135 3.865
16 N -0.585 5.585
17 C -0.254 4.254
18 H 0.071 0.929
19 C 0.003 3.997
20 N -0.897 5.897
21 Si 0.901 3.099
22 H -0.287 1.287
23 H -0.289 1.289
24 H -0.279 1.279
25 C 0.135 3.865
26 H 0.074 0.926
27 C 0.102 3.898
28 N -0.444 5.444
29 C 0.118 3.882
30 C -0.108 4.108
31 H 0.075 0.925
32 H 0.069 0.931
33 H 0.076 0.924
34 H 0.140 0.860
35 H 0.147 0.853
36 H 0.136 0.864
37 H 0.071 0.929
38 H 0.075 0.925
39 H 0.071 0.929
40 H 0.040 0.960
41 H 0.080 0.920
42 H 0.097 0.903
43 H 0.028 0.972
44 H 0.255 0.745
45 H 0.089 0.911
46 H 0.071 0.929
47 H 0.080 0.920
48 H 0.079 0.921
49 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.520 -1.788 0.274 24.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.125 4.125
3 C -0.105 4.105
4 C -0.137 4.137
5 C -0.047 4.047
6 C 0.347 3.653
7 O -0.415 6.415
8 N -0.311 5.311
9 C -0.041 4.041
10 C -0.163 4.163
11 C 0.022 3.978
12 H 0.068 0.932
13 O -0.306 6.306
14 C -0.038 4.038
15 C 0.009 3.991
16 N -0.307 5.307
17 C -0.383 4.383
18 H 0.088 0.912
19 C -0.196 4.196
20 N -0.541 5.541
21 Si 0.731 3.269
22 H -0.214 1.214
23 H -0.215 1.215
24 H -0.204 1.204
25 C 0.027 3.973
26 H 0.092 0.908
27 C -0.021 4.021
28 N -0.157 5.157
29 C -0.021 4.021
30 C -0.165 4.165
31 H 0.094 0.906
32 H 0.088 0.912
33 H 0.094 0.906
34 H 0.158 0.842
35 H 0.165 0.835
36 H 0.152 0.848
37 H 0.089 0.911
38 H 0.093 0.907
39 H 0.090 0.910
40 H 0.059 0.941
41 H 0.099 0.901
42 H 0.115 0.885
43 H 0.046 0.954
44 H 0.065 0.935
45 H 0.107 0.893
46 H 0.089 0.911
47 H 0.099 0.901
48 H 0.097 0.903
49 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -23.582 -2.182 0.674 23.692
hybrid contribution 0.803 1.210 -0.632 1.584
sum -22.779 -0.972 0.042 22.800
Atomic orbital electron populations
1.20851 0.90029 1.03406 1.02833 1.20884 0.97627 0.93551 1.00412
1.21487 0.93574 0.98364 0.97062 1.22080 0.94855 0.98950 0.97830
1.21298 0.94494 0.89484 0.99421 1.17908 0.85460 0.82938 0.78997
1.90793 1.65843 1.36831 1.48057 1.48143 1.07994 1.14650 1.60325
1.22743 0.99337 0.88105 0.93940 1.21840 0.94769 1.01658 0.97998
1.22224 0.93574 0.88579 0.93398 0.93247 1.87724 1.25555 1.50960
1.66311 1.23301 0.81575 0.98844 1.00066 1.21509 0.99372 0.84155
0.94060 1.44390 0.99579 1.26097 1.60627 1.19180 0.88468 1.20752
1.09906 0.91157 1.24919 0.98360 1.00631 0.95673 1.70092 1.17418
1.51303 1.15259 0.86295 0.81573 0.78100 0.80956 1.21407 1.21480
1.20425 1.21586 0.86230 0.95040 0.94480 0.90757 1.22422 0.76327
1.03363 1.00010 1.67461 1.07334 1.29269 1.11610 1.21318 0.89539
0.95344 0.95931 1.20816 0.99311 0.92927 1.03412 0.90599 0.91203
0.90558 0.84198 0.83528 0.84813 0.91063 0.90663 0.91030 0.94121
0.90144 0.88455 0.95391 0.93495 0.89300 0.91116 0.90136 0.90288
0.90089
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.56 9.62 36.01 0.35 -0.21 16
2 C -0.12 -1.03 5.91 -104.36 -0.62 -1.65 16
3 C -0.08 -0.72 9.85 -39.31 -0.39 -1.11 16
4 C -0.12 -1.43 9.63 -39.05 -0.38 -1.80 16
5 C 0.09 1.34 6.45 -83.01 -0.54 0.80 16
6 C 0.56 10.38 7.61 -12.18 -0.09 10.28 16
7 O -0.54 -11.67 15.96 5.36 0.09 -11.58 16
8 N -0.58 -10.66 2.96 -173.77 -0.51 -11.18 16
9 C 0.08 1.25 5.86 -3.70 -0.02 1.23 16
10 C -0.12 -1.86 5.82 -26.90 -0.16 -2.01 16
11 C 0.08 1.52 2.73 -26.88 -0.07 1.45 16
12 H 0.05 0.95 8.11 -51.92 -0.42 0.52 16
13 O -0.39 -7.51 9.59 -35.23 -0.34 -7.85 16
14 C 0.04 0.79 6.97 37.28 0.26 1.05 16
15 C 0.13 3.21 5.02 -3.56 -0.02 3.19 16
16 N -0.58 -14.64 2.73 -163.87 -0.45 -15.09 16
17 C -0.25 -6.97 9.69 -15.06 -0.15 -7.12 16
18 H 0.07 1.91 7.92 -52.49 -0.42 1.49 16
19 C 0.00 0.09 4.85 -17.43 -0.08 0.00 16
20 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16
21 Si 0.90 21.69 29.61 -169.99 -5.03 16.66 16
22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
25 C 0.14 2.93 3.03 -67.07 -0.20 2.72 16
26 H 0.07 1.65 7.99 -51.93 -0.41 1.23 16
27 C 0.10 2.20 5.62 -3.72 -0.02 2.18 16
28 N -0.44 -5.75 6.30 -6.06 -0.04 -5.79 16
29 C 0.12 1.17 6.78 -82.60 -0.56 0.61 16
30 C -0.11 -0.71 9.76 36.01 0.35 -0.36 16
31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16
33 H 0.08 0.29 5.95 -51.93 -0.31 -0.02 16
34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16
35 H 0.15 1.76 7.81 -52.49 -0.41 1.35 16
36 H 0.14 1.87 3.94 -79.58 -0.31 1.55 16
37 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16
38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
40 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16
41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16
42 H 0.10 2.54 5.98 -51.93 -0.31 2.23 16
43 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16
44 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16
45 H 0.09 2.18 7.00 -51.93 -0.36 1.82 16
46 H 0.07 1.62 6.56 -51.93 -0.34 1.28 16
47 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16
48 H 0.08 0.35 5.94 -51.93 -0.31 0.04 16
49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
LS Contribution 378.64 15.07 5.71 5.71
Total: -1.00 -32.62 378.64 -9.62 -42.24
By element:
Atomic # 1 Polarization: 10.23 SS G_CDS: -7.33 Total: 2.90 kcal
Atomic # 6 Polarization: 11.59 SS G_CDS: -2.33 Total: 9.25 kcal
Atomic # 7 Polarization: -56.95 SS G_CDS: -0.38 Total: -57.33 kcal
Atomic # 8 Polarization: -19.18 SS G_CDS: -0.25 Total: -19.43 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -32.62 -9.62 -42.24 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074300544.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.357 kcal
(2) G-P(sol) polarization free energy of solvation -32.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.119 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds