Wall clock time and date at job start Wed Apr 1 2020 04:54:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38622 * 120.32561 * 2 1
4 4 C 1.38592 * 118.49081 * 179.70557 * 3 2 1
5 5 C 1.39315 * 119.05412 * 0.51341 * 4 3 2
6 6 C 1.48163 * 119.72013 * 179.74833 * 5 4 3
7 7 O 1.21512 * 120.00157 * 22.75496 * 6 5 4
8 8 N 1.34782 * 120.00032 * 202.74398 * 6 5 4
9 9 C 1.46986 * 120.71723 * 358.67616 * 8 6 5
10 10 C 1.53157 * 108.43812 * 125.42386 * 9 8 6
11 11 C 1.52506 * 109.79423 * 54.53489 * 10 9 8
12 12 H 1.09008 * 108.93774 * 180.32776 * 11 10 9
13 13 O 1.42684 * 110.62657 * 61.29082 * 11 10 9
14 14 C 1.43064 * 113.88185 * 174.66104 * 13 11 10
15 15 C 1.53232 * 109.44884 * 61.64305 * 14 13 11
16 16 N 1.47168 * 108.69199 * 308.41076 * 15 14 13
17 17 C 1.36940 * 121.22767 * 230.93627 * 16 15 14
18 18 H 1.07993 * 120.00326 * 158.20760 * 17 16 15
19 19 C 1.38815 * 119.99497 * 338.20150 * 17 16 15
20 20 N 1.31613 * 120.00365 * 337.33978 * 19 17 16
21 21 Si 1.86801 * 119.99839 * 157.33471 * 19 17 16
22 22 H 1.48494 * 109.47202 * 94.67882 * 21 19 17
23 23 H 1.48494 * 109.47501 * 214.68265 * 21 19 17
24 24 H 1.48508 * 109.46931 * 334.67943 * 21 19 17
25 25 C 1.47593 * 117.55370 * 50.95596 * 16 15 14
26 26 H 1.08998 * 110.31786 * 186.67677 * 25 16 15
27 27 C 1.46790 * 120.72145 * 178.64387 * 8 6 5
28 28 N 1.32716 * 120.55541 * 359.48101 * 5 4 3
29 29 C 1.31525 * 121.63933 * 0.26742 * 28 5 4
30 30 C 1.50702 * 119.54523 * 180.02562 * 29 28 5
31 31 H 1.08995 * 109.46567 * 270.02301 * 1 2 3
32 32 H 1.09006 * 109.46580 * 30.01757 * 1 2 3
33 33 H 1.08997 * 109.47053 * 150.01787 * 1 2 3
34 34 H 1.08006 * 120.75753 * 359.97438 * 3 2 1
35 35 H 1.07999 * 120.47709 * 180.28611 * 4 3 2
36 36 H 1.08998 * 109.64833 * 5.73492 * 9 8 6
37 37 H 1.09002 * 109.81449 * 245.20550 * 9 8 6
38 38 H 1.09001 * 109.41735 * 174.62833 * 10 9 8
39 39 H 1.08994 * 109.42022 * 294.43408 * 10 9 8
40 40 H 1.08994 * 109.47687 * 301.64683 * 14 13 11
41 41 H 1.09004 * 109.48317 * 181.63651 * 14 13 11
42 42 H 1.09005 * 109.59925 * 188.64974 * 15 14 13
43 43 H 1.08994 * 109.60516 * 68.17509 * 15 14 13
44 44 H 0.97006 * 120.00328 * 180.02562 * 20 19 17
45 45 H 1.09001 * 109.52025 * 354.22771 * 27 8 6
46 46 H 1.08994 * 109.51825 * 114.40987 * 27 8 6
47 47 H 1.09000 * 109.47332 * 90.00365 * 30 29 28
48 48 H 1.09004 * 109.47290 * 210.00258 * 30 29 28
49 49 H 1.09000 * 109.47454 * 330.00428 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2070 1.1965 0.0000
4 6 3.5922 1.1522 0.0063
5 6 4.2294 -0.0867 0.0014
6 6 5.7097 -0.1513 0.0023
7 8 6.3586 0.7899 0.4140
8 7 6.3364 -1.2542 -0.4533
9 6 5.5668 -2.4131 -0.9276
10 6 6.0272 -2.7517 -2.3485
11 6 7.5388 -2.9532 -2.3673
12 1 7.8519 -3.1874 -3.3848
13 8 7.9116 -4.0394 -1.5205
14 6 9.3028 -4.3680 -1.5786
15 6 10.1308 -3.1664 -1.1110
16 7 9.7020 -1.9766 -1.8636
17 6 10.6105 -1.1735 -2.4998
18 1 10.2929 -0.5373 -3.3126
19 6 11.9398 -1.1771 -2.0999
20 7 12.2606 -1.5701 -0.8854
21 14 13.2733 -0.6242 -3.2854
22 1 13.5712 0.8130 -3.0601
23 1 14.5022 -1.4261 -3.0572
24 1 12.8067 -0.8201 -4.6816
25 6 8.2567 -1.6805 -1.9072
26 1 8.0606 -0.8511 -2.5866
27 6 7.8022 -1.3236 -0.4871
28 7 3.5218 -1.2094 0.0013
29 6 2.2066 -1.1960 0.0004
30 6 1.4501 -2.4994 0.0009
31 1 -0.3632 0.0004 1.0276
32 1 -0.3633 0.8899 -0.5142
33 1 -0.3633 -0.8901 -0.5135
34 1 1.6847 2.1419 -0.0004
35 1 4.1694 2.0649 0.0111
36 1 4.5044 -2.1694 -0.9350
37 1 5.7423 -3.2664 -0.2725
38 1 5.5357 -3.6662 -2.6805
39 1 5.7622 -1.9348 -3.0197
40 1 9.5744 -4.6196 -2.6037
41 1 9.5023 -5.2211 -0.9300
42 1 11.1879 -3.3558 -1.2976
43 1 9.9688 -3.0030 -0.0456
44 1 13.1895 -1.5723 -0.6058
45 1 8.2193 -0.3574 -0.2032
46 1 8.1467 -2.0887 0.2086
47 1 1.2671 -2.8129 1.0287
48 1 0.4983 -2.3674 -0.5136
49 1 2.0378 -3.2608 -0.5119
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001074300544.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:58
Heat of formation + Delta-G solvation = -16.660443 kcal
Electronic energy + Delta-G solvation = -31650.118748 eV
Core-core repulsion = 27577.860996 eV
Total energy + Delta-G solvation = -4072.257753 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.12181 -41.02751 -39.83424 -37.26815 -36.49438 -35.03430 -34.06917 -33.45702
-33.06941 -31.11382 -29.59602 -29.14564 -28.38743 -26.25956 -25.65842 -24.52546
-23.91496 -23.04800 -22.87501 -21.22844 -19.95621 -19.00354 -18.63483 -17.70492
-17.19729 -17.11796 -16.95742 -16.67233 -16.33160 -16.07431 -15.89859 -15.50625
-15.48518 -15.23893 -14.88586 -14.61241 -14.48152 -14.25806 -13.97637 -13.75547
-13.61782 -13.59466 -13.34488 -13.17034 -13.13378 -12.94313 -12.80100 -12.61957
-12.49523 -12.26384 -12.26076 -12.11064 -11.86972 -11.75773 -11.40716 -11.26527
-10.83085 -10.75302 -10.52211 -9.99580 -9.91383 -9.64902 -8.80347 -7.96545
-5.37149 -0.38289 0.18842 1.42587 1.43763 1.54720 1.58644 1.83867
2.44858 2.66613 2.85140 2.98617 3.16448 3.41107 3.56158 3.78567
3.83398 3.88601 3.92936 4.05800 4.08473 4.16215 4.22481 4.25745
4.42669 4.50485 4.55529 4.59729 4.60198 4.72804 4.76157 4.81564
4.82744 4.84945 4.91746 4.95963 4.97973 5.03747 5.13827 5.19179
5.22194 5.26303 5.30650 5.32838 5.47671 5.53846 5.58324 5.79338
6.20444 6.32003 6.34966 6.69037 6.98998 7.02659 7.67957 8.21624
9.09334
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.019209 B = 0.002968 C = 0.002715
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1457.294427 B = 9431.511403 C =10311.191215
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.105 4.105
3 C -0.075 4.075
4 C -0.125 4.125
5 C 0.060 3.940
6 C 0.555 3.445
7 O -0.586 6.586
8 N -0.583 5.583
9 C 0.083 3.917
10 C -0.115 4.115
11 C 0.088 3.912
12 H 0.052 0.948
13 O -0.383 6.383
14 C 0.052 3.948
15 C 0.141 3.859
16 N -0.601 5.601
17 C -0.268 4.268
18 H 0.068 0.932
19 C -0.047 4.047
20 N -0.930 5.930
21 Si 0.969 3.031
22 H -0.289 1.289
23 H -0.287 1.287
24 H -0.268 1.268
25 C 0.134 3.866
26 H 0.063 0.937
27 C 0.120 3.880
28 N -0.461 5.461
29 C 0.110 3.890
30 C -0.107 4.107
31 H 0.090 0.910
32 H 0.085 0.915
33 H 0.094 0.906
34 H 0.175 0.825
35 H 0.137 0.863
36 H 0.159 0.841
37 H 0.065 0.935
38 H 0.110 0.890
39 H 0.082 0.918
40 H 0.048 0.952
41 H 0.109 0.891
42 H 0.072 0.928
43 H -0.001 1.001
44 H 0.253 0.747
45 H 0.045 0.955
46 H 0.050 0.950
47 H 0.090 0.910
48 H 0.108 0.892
49 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.945 -2.871 -1.141 29.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.107 4.107
3 C -0.100 4.100
4 C -0.146 4.146
5 C -0.076 4.076
6 C 0.343 3.657
7 O -0.467 6.467
8 N -0.313 5.313
9 C -0.037 4.037
10 C -0.154 4.154
11 C 0.028 3.972
12 H 0.070 0.930
13 O -0.302 6.302
14 C -0.025 4.025
15 C 0.016 3.984
16 N -0.324 5.324
17 C -0.398 4.398
18 H 0.086 0.914
19 C -0.243 4.243
20 N -0.575 5.575
21 Si 0.797 3.203
22 H -0.216 1.216
23 H -0.213 1.213
24 H -0.193 1.193
25 C 0.026 3.974
26 H 0.081 0.919
27 C -0.005 4.005
28 N -0.174 5.174
29 C -0.030 4.030
30 C -0.164 4.164
31 H 0.108 0.892
32 H 0.104 0.896
33 H 0.112 0.888
34 H 0.192 0.808
35 H 0.155 0.845
36 H 0.174 0.826
37 H 0.083 0.917
38 H 0.128 0.872
39 H 0.101 0.899
40 H 0.067 0.933
41 H 0.127 0.873
42 H 0.090 0.910
43 H 0.017 0.983
44 H 0.062 0.938
45 H 0.064 0.936
46 H 0.069 0.931
47 H 0.108 0.892
48 H 0.127 0.873
49 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -28.054 -3.288 -0.760 28.257
hybrid contribution 1.983 1.610 -0.107 2.557
sum -26.071 -1.678 -0.867 26.139
Atomic orbital electron populations
1.20996 0.86732 1.05148 1.04172 1.21383 0.99798 0.92503 0.97052
1.21870 0.91988 1.00405 0.95731 1.22130 0.96544 0.97655 0.98246
1.20662 0.91969 0.91215 1.03734 1.18623 0.87517 0.81942 0.77584
1.90744 1.67524 1.38422 1.49979 1.48186 1.06497 1.15979 1.60642
1.22982 1.00236 0.86581 0.93946 1.21874 0.91855 1.03748 0.97898
1.22243 0.95684 0.86277 0.92970 0.93014 1.87741 1.25015 1.50849
1.66619 1.23164 0.81019 0.97435 1.00929 1.21364 0.98860 0.85679
0.92517 1.44625 1.00734 1.26465 1.60609 1.19476 0.89422 1.20892
1.09973 0.91412 1.25704 1.00267 1.01321 0.97034 1.70240 1.17483
1.52898 1.16880 0.85247 0.78647 0.77214 0.79234 1.21639 1.21292
1.19258 1.21722 0.85002 0.96715 0.93998 0.91868 1.21868 0.78953
1.00094 0.99541 1.67191 1.09062 1.28554 1.12568 1.21978 0.88515
0.97610 0.94864 1.20964 1.00037 0.90946 1.04425 0.89163 0.89629
0.88768 0.80796 0.84516 0.82555 0.91699 0.87201 0.89909 0.93325
0.87270 0.91001 0.98259 0.93819 0.93613 0.93138 0.89184 0.87322
0.90325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.48 9.62 71.24 0.69 0.20 16
2 C -0.11 -1.36 5.91 -19.69 -0.12 -1.47 16
3 C -0.07 -1.14 9.85 22.45 0.22 -0.92 16
4 C -0.12 -3.02 9.63 22.61 0.22 -2.81 16
5 C 0.06 1.78 6.45 41.91 0.27 2.05 16
6 C 0.56 21.83 7.61 86.88 0.66 22.49 16
7 O -0.59 -27.71 15.96 -3.75 -0.06 -27.77 16
8 N -0.58 -22.49 2.96 -821.99 -2.43 -24.92 16
9 C 0.08 2.52 5.86 86.34 0.51 3.03 16
10 C -0.12 -3.23 5.82 30.48 0.18 -3.05 16
11 C 0.09 3.22 2.73 30.50 0.08 3.30 16
12 H 0.05 1.91 8.11 -2.38 -0.02 1.89 16
13 O -0.38 -14.58 9.59 -148.98 -1.43 -16.01 16
14 C 0.05 2.05 6.97 72.06 0.50 2.55 16
15 C 0.14 7.05 5.02 86.33 0.43 7.48 16
16 N -0.60 -31.60 2.73 -672.37 -1.83 -33.43 16
17 C -0.27 -15.33 9.69 84.03 0.81 -14.51 16
18 H 0.07 3.81 7.92 -2.91 -0.02 3.79 16
19 C -0.05 -2.72 4.85 84.86 0.41 -2.31 16
20 N -0.93 -56.24 11.20 21.65 0.24 -56.00 16
21 Si 0.97 45.92 29.61 68.60 2.03 47.95 16
22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16
24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
25 C 0.13 6.04 3.03 44.95 0.14 6.18 16
26 H 0.06 2.95 7.99 -2.39 -0.02 2.93 16
27 C 0.12 5.61 5.62 86.43 0.49 6.09 16
28 N -0.46 -11.33 6.30 -173.08 -1.09 -12.42 16
29 C 0.11 1.84 6.78 42.68 0.29 2.13 16
30 C -0.11 -0.97 9.76 71.24 0.70 -0.27 16
31 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16
32 H 0.08 0.18 8.09 -2.38 -0.02 0.16 16
33 H 0.09 0.13 5.95 -2.39 -0.01 0.11 16
34 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16
35 H 0.14 3.47 7.81 -2.91 -0.02 3.45 16
36 H 0.16 4.13 3.94 -56.98 -0.22 3.91 16
37 H 0.06 2.05 7.95 -2.39 -0.02 2.03 16
38 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16
39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
40 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16
41 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16
42 H 0.07 3.94 5.98 -2.38 -0.01 3.93 16
43 H 0.00 -0.04 7.17 -2.39 -0.02 -0.05 16
44 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16
45 H 0.05 2.48 7.00 -2.39 -0.02 2.46 16
46 H 0.05 2.51 6.56 -2.39 -0.02 2.50 16
47 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
48 H 0.11 0.34 5.94 -2.38 -0.01 0.33 16
49 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16
Total: -1.00 -77.74 378.64 2.65 -75.09
By element:
Atomic # 1 Polarization: 16.61 SS G_CDS: 0.75 Total: 17.36 kcal
Atomic # 6 Polarization: 23.68 SS G_CDS: 6.47 Total: 30.16 kcal
Atomic # 7 Polarization: -121.66 SS G_CDS: -5.11 Total: -126.78 kcal
Atomic # 8 Polarization: -42.29 SS G_CDS: -1.49 Total: -43.78 kcal
Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal
Total: -77.74 2.65 -75.09 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074300544.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.427 kcal
(2) G-P(sol) polarization free energy of solvation -77.740 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds