Wall clock time and date at job start Wed Apr 1 2020 04:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38629 * 120.32209 * 2 1 4 4 C 1.38594 * 118.48767 * 179.75374 * 3 2 1 5 5 C 1.39305 * 119.05402 * 0.50631 * 4 3 2 6 6 C 1.48169 * 119.71929 * 179.75668 * 5 4 3 7 7 O 1.21513 * 120.00051 * 352.51973 * 6 5 4 8 8 N 1.34785 * 120.00048 * 172.52191 * 6 5 4 9 9 C 1.46984 * 120.71794 * 350.40336 * 8 6 5 10 10 C 1.53162 * 108.43785 * 234.56930 * 9 8 6 11 11 C 1.52507 * 109.79543 * 305.46793 * 10 9 8 12 12 H 1.08995 * 108.93592 * 179.01077 * 11 10 9 13 13 O 1.42698 * 110.61633 * 298.71295 * 11 10 9 14 14 C 1.43071 * 113.87117 * 185.34443 * 13 11 10 15 15 C 1.53234 * 109.44820 * 298.34817 * 14 13 11 16 16 N 1.47174 * 108.69216 * 51.59032 * 15 14 13 17 17 C 1.36939 * 121.22389 * 129.02614 * 16 15 14 18 18 H 1.08000 * 120.00218 * 199.64010 * 17 16 15 19 19 C 1.38818 * 119.99686 * 19.63382 * 17 16 15 20 20 N 1.31611 * 119.99939 * 32.28975 * 19 17 16 21 21 Si 1.86802 * 119.99862 * 212.27969 * 19 17 16 22 22 H 1.48498 * 109.46623 * 95.00033 * 21 19 17 23 23 H 1.48498 * 109.47284 * 215.00176 * 21 19 17 24 24 H 1.48501 * 109.47080 * 335.00473 * 21 19 17 25 25 C 1.47592 * 117.55126 * 309.05251 * 16 15 14 26 26 H 1.09006 * 111.16726 * 172.80952 * 25 16 15 27 27 C 1.46791 * 120.72249 * 170.42631 * 8 6 5 28 28 N 1.32717 * 120.55914 * 359.48454 * 5 4 3 29 29 C 1.31529 * 121.64138 * 0.27086 * 28 5 4 30 30 C 1.50690 * 119.54816 * 180.02562 * 29 28 5 31 31 H 1.08998 * 109.47611 * 269.97865 * 1 2 3 32 32 H 1.08998 * 109.47305 * 29.97645 * 1 2 3 33 33 H 1.08996 * 109.47201 * 149.97605 * 1 2 3 34 34 H 1.08003 * 120.75731 * 0.02562 * 3 2 1 35 35 H 1.07994 * 120.47131 * 180.28907 * 4 3 2 36 36 H 1.09010 * 109.64204 * 114.88901 * 9 8 6 37 37 H 1.09000 * 109.82318 * 354.35897 * 9 8 6 38 38 H 1.09004 * 109.41196 * 185.36814 * 10 9 8 39 39 H 1.08999 * 109.41076 * 65.56763 * 10 9 8 40 40 H 1.08999 * 109.47704 * 58.34019 * 14 13 11 41 41 H 1.08997 * 109.47480 * 178.35437 * 14 13 11 42 42 H 1.08995 * 109.59919 * 291.82822 * 15 14 13 43 43 H 1.09002 * 109.59971 * 171.35343 * 15 14 13 44 44 H 0.96997 * 120.00212 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.51748 * 245.59999 * 27 8 6 46 46 H 1.09005 * 109.51764 * 5.77794 * 27 8 6 47 47 H 1.09005 * 109.47082 * 90.00056 * 30 29 28 48 48 H 1.08997 * 109.47433 * 209.99922 * 30 29 28 49 49 H 1.08998 * 109.47785 * 330.00119 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 0.0052 5 6 4.2293 -0.0865 -0.0005 6 6 5.7096 -0.1511 -0.0005 7 8 6.3621 0.8655 -0.1325 8 7 6.3324 -1.3374 0.1460 9 6 5.5756 -2.5422 0.5147 10 6 6.2180 -3.1547 1.7629 11 6 7.7024 -3.3994 1.5126 12 1 8.1488 -3.8184 2.4144 13 8 7.8857 -4.3175 0.4357 14 6 9.2497 -4.6909 0.2190 15 6 10.0676 -3.4471 -0.1444 16 7 9.8210 -2.4080 0.8682 17 6 10.8565 -1.7656 1.4929 18 1 10.6887 -1.2548 2.4296 19 6 12.1220 -1.7711 0.9223 20 7 12.2532 -1.7868 -0.3872 21 14 13.6384 -1.7558 2.0129 22 1 14.1132 -3.1475 2.2200 23 1 14.7090 -0.9594 1.3612 24 1 13.2986 -1.1484 3.3248 25 6 8.4166 -2.0842 1.1861 26 1 8.3522 -1.3989 2.0313 27 6 7.7813 -1.4540 -0.0588 28 7 3.5217 -1.2093 -0.0005 29 6 2.2065 -1.1960 -0.0005 30 6 1.4502 -2.4994 0.0001 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6846 2.1420 0.0004 35 1 4.1692 2.0651 0.0101 36 1 5.6086 -3.2607 -0.3044 37 1 4.5400 -2.2774 0.7281 38 1 5.7288 -4.1008 1.9950 39 1 6.1001 -2.4711 2.6036 40 1 9.6528 -5.1382 1.1276 41 1 9.3039 -5.4124 -0.5962 42 1 9.7619 -3.0821 -1.1249 43 1 11.1281 -3.6985 -0.1597 44 1 13.1374 -1.7903 -0.7860 45 1 7.9769 -2.0844 -0.9263 46 1 8.2067 -0.4640 -0.2234 47 1 1.2678 -2.8132 1.0279 48 1 0.4981 -2.3672 -0.5138 49 1 2.0375 -3.2606 -0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074300547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:11 Heat of formation + Delta-G solvation = 6.824795 kcal Electronic energy + Delta-G solvation = -31634.297142 eV Core-core repulsion = 27563.057786 eV Total energy + Delta-G solvation = -4071.239356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.03715 -39.64427 -38.35001 -35.74281 -34.62291 -34.20122 -33.27421 -31.65515 -31.45922 -29.52035 -28.68679 -27.91903 -27.10627 -24.91068 -23.83362 -23.07399 -22.86421 -22.01960 -21.34653 -19.89198 -18.41138 -17.47453 -16.87785 -16.63667 -15.85015 -15.48807 -15.44199 -15.27431 -15.05567 -14.75931 -14.51060 -14.34844 -14.04181 -13.79357 -13.53993 -13.39406 -13.25960 -13.19134 -12.97815 -12.66959 -12.49947 -12.38313 -12.24026 -12.13443 -11.88296 -11.68510 -11.34519 -11.07253 -10.94111 -10.71835 -10.61280 -10.27775 -10.17740 -10.05111 -9.92317 -9.86551 -9.60577 -9.03009 -9.01784 -8.83814 -8.45769 -8.10925 -6.85231 -5.89692 -3.15879 0.51609 0.97557 2.80131 3.24167 3.37715 3.46706 3.48262 3.72342 3.92965 4.35908 4.38620 4.46607 4.52327 4.55251 4.66773 4.98625 5.10818 5.14684 5.25114 5.26806 5.29575 5.32924 5.35093 5.38309 5.50436 5.56679 5.67667 5.75761 5.77929 5.83051 5.88273 5.95754 6.06667 6.09041 6.13441 6.20025 6.31264 6.33858 6.38809 6.46336 6.63623 6.75849 6.79474 7.03361 7.07445 7.37500 7.54496 7.77832 7.83990 7.92256 8.24589 8.44253 9.06978 9.73865 10.29951 11.18678 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.002933 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.296995 B = 9544.234666 C =10425.028737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C -0.079 4.079 4 C -0.115 4.115 5 C 0.089 3.911 6 C 0.561 3.439 7 O -0.537 6.537 8 N -0.582 5.582 9 C 0.080 3.920 10 C -0.124 4.124 11 C 0.080 3.920 12 H 0.050 0.950 13 O -0.385 6.385 14 C 0.041 3.959 15 C 0.135 3.865 16 N -0.583 5.583 17 C -0.262 4.262 18 H 0.073 0.927 19 C 0.008 3.992 20 N -0.884 5.884 21 Si 0.890 3.110 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.136 3.864 26 H 0.075 0.925 27 C 0.102 3.898 28 N -0.443 5.443 29 C 0.118 3.882 30 C -0.108 4.108 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.029 0.971 43 H 0.089 0.911 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.917 -1.472 1.158 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.136 4.136 5 C -0.049 4.049 6 C 0.347 3.653 7 O -0.414 6.414 8 N -0.313 5.313 9 C -0.043 4.043 10 C -0.162 4.162 11 C 0.021 3.979 12 H 0.068 0.932 13 O -0.304 6.304 14 C -0.037 4.037 15 C 0.009 3.991 16 N -0.306 5.306 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.192 4.192 20 N -0.526 5.526 21 Si 0.720 3.280 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.028 3.972 26 H 0.093 0.907 27 C -0.022 4.022 28 N -0.156 5.156 29 C -0.021 4.021 30 C -0.165 4.165 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.024 -1.773 0.868 24.105 hybrid contribution 0.947 0.875 0.541 1.398 sum -23.077 -0.898 1.409 23.138 Atomic orbital electron populations 1.20852 0.90034 1.03413 1.02841 1.20896 0.97628 0.93575 1.00339 1.21502 0.93602 0.98359 0.97035 1.22105 0.94812 0.99115 0.97575 1.21346 0.94543 0.89450 0.99515 1.17911 0.85473 0.83880 0.78078 1.90788 1.65650 1.33949 1.51037 1.48119 1.09342 1.08027 1.65767 1.22861 0.98849 0.86085 0.96461 1.21846 0.94727 1.01026 0.98644 1.22252 0.94743 0.91234 0.89710 0.93191 1.87733 1.26600 1.63099 1.52980 1.23258 0.82431 0.98207 0.99778 1.21432 0.99872 0.86562 0.91208 1.44431 0.99168 1.40412 1.46550 1.19152 0.87026 1.31555 1.01272 0.90950 1.24789 0.98362 1.00983 0.95032 1.70258 1.22606 1.51024 1.08727 0.86446 0.83238 0.77634 0.80731 1.21445 1.21909 1.20282 1.21559 0.85936 0.93870 0.95850 0.90710 1.22421 0.76693 1.02848 1.00189 1.67517 1.07185 1.29036 1.11834 1.21355 0.89648 0.95341 0.95764 1.20819 0.99355 0.92971 1.03399 0.90566 0.91212 0.90568 0.84199 0.83381 0.91376 0.84224 0.90656 0.91010 0.93999 0.90096 0.95328 0.89285 0.93518 0.91210 0.89319 0.90100 0.90279 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 9.62 36.01 0.35 -0.21 16 2 C -0.12 -1.02 5.91 -104.36 -0.62 -1.64 16 3 C -0.08 -0.71 9.85 -39.31 -0.39 -1.10 16 4 C -0.12 -1.40 9.63 -39.05 -0.38 -1.78 16 5 C 0.09 1.30 6.60 -83.01 -0.55 0.76 16 6 C 0.56 10.31 7.65 -12.18 -0.09 10.22 16 7 O -0.54 -11.56 15.79 5.35 0.08 -11.48 16 8 N -0.58 -10.66 2.96 -173.76 -0.51 -11.17 16 9 C 0.08 1.23 5.71 -3.69 -0.02 1.21 16 10 C -0.12 -1.86 5.82 -26.90 -0.16 -2.01 16 11 C 0.08 1.49 2.72 -26.89 -0.07 1.42 16 12 H 0.05 0.96 8.12 -51.93 -0.42 0.53 16 13 O -0.38 -7.44 9.59 -35.23 -0.34 -7.78 16 14 C 0.04 0.80 6.97 37.28 0.26 1.06 16 15 C 0.13 3.19 5.13 -3.55 -0.02 3.17 16 16 N -0.58 -14.61 2.73 -163.87 -0.45 -15.06 16 17 C -0.26 -7.22 9.64 -15.06 -0.15 -7.36 16 18 H 0.07 1.99 8.00 -52.49 -0.42 1.57 16 19 C 0.01 0.24 4.58 -17.43 -0.08 0.16 16 20 N -0.88 -25.63 11.75 55.49 0.65 -24.98 16 21 Si 0.89 21.65 29.66 -169.99 -5.04 16.60 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.14 2.96 3.00 -67.08 -0.20 2.76 16 26 H 0.07 1.68 8.03 -51.93 -0.42 1.26 16 27 C 0.10 2.19 5.63 -3.72 -0.02 2.17 16 28 N -0.44 -5.68 6.03 -6.06 -0.04 -5.71 16 29 C 0.12 1.16 6.78 -82.61 -0.56 0.60 16 30 C -0.11 -0.71 9.76 36.00 0.35 -0.36 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.08 0.29 5.95 -51.93 -0.31 -0.02 16 34 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.15 1.79 7.66 -52.49 -0.40 1.38 16 36 H 0.07 1.10 7.94 -51.92 -0.41 0.68 16 37 H 0.14 1.94 4.05 -83.43 -0.34 1.60 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 43 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.07 1.59 6.56 -51.93 -0.34 1.25 16 46 H 0.09 2.18 7.01 -51.93 -0.36 1.81 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.35 5.94 -51.93 -0.31 0.04 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -32.69 378.87 -9.63 -42.32 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.36 Total: 2.47 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.34 Total: 9.07 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.35 Total: -56.92 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.25 Total: -19.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.04 Total: 16.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.69 -9.63 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074300547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.149 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds