Wall clock time and date at job start Wed Apr 1 2020 04:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38629 * 120.32209 * 2 1 4 4 C 1.38594 * 118.48767 * 179.75374 * 3 2 1 5 5 C 1.39305 * 119.05402 * 0.50631 * 4 3 2 6 6 C 1.48169 * 119.71929 * 179.75668 * 5 4 3 7 7 O 1.21513 * 120.00051 * 352.51973 * 6 5 4 8 8 N 1.34785 * 120.00048 * 172.52191 * 6 5 4 9 9 C 1.46984 * 120.71794 * 350.40336 * 8 6 5 10 10 C 1.53162 * 108.43785 * 234.56930 * 9 8 6 11 11 C 1.52507 * 109.79543 * 305.46793 * 10 9 8 12 12 H 1.08995 * 108.93592 * 179.01077 * 11 10 9 13 13 O 1.42698 * 110.61633 * 298.71295 * 11 10 9 14 14 C 1.43071 * 113.87117 * 185.34443 * 13 11 10 15 15 C 1.53234 * 109.44820 * 298.34817 * 14 13 11 16 16 N 1.47174 * 108.69216 * 51.59032 * 15 14 13 17 17 C 1.36939 * 121.22389 * 129.02614 * 16 15 14 18 18 H 1.08000 * 120.00218 * 199.64010 * 17 16 15 19 19 C 1.38818 * 119.99686 * 19.63382 * 17 16 15 20 20 N 1.31611 * 119.99939 * 32.28975 * 19 17 16 21 21 Si 1.86802 * 119.99862 * 212.27969 * 19 17 16 22 22 H 1.48498 * 109.46623 * 95.00033 * 21 19 17 23 23 H 1.48498 * 109.47284 * 215.00176 * 21 19 17 24 24 H 1.48501 * 109.47080 * 335.00473 * 21 19 17 25 25 C 1.47592 * 117.55126 * 309.05251 * 16 15 14 26 26 H 1.09006 * 111.16726 * 172.80952 * 25 16 15 27 27 C 1.46791 * 120.72249 * 170.42631 * 8 6 5 28 28 N 1.32717 * 120.55914 * 359.48454 * 5 4 3 29 29 C 1.31529 * 121.64138 * 0.27086 * 28 5 4 30 30 C 1.50690 * 119.54816 * 180.02562 * 29 28 5 31 31 H 1.08998 * 109.47611 * 269.97865 * 1 2 3 32 32 H 1.08998 * 109.47305 * 29.97645 * 1 2 3 33 33 H 1.08996 * 109.47201 * 149.97605 * 1 2 3 34 34 H 1.08003 * 120.75731 * 0.02562 * 3 2 1 35 35 H 1.07994 * 120.47131 * 180.28907 * 4 3 2 36 36 H 1.09010 * 109.64204 * 114.88901 * 9 8 6 37 37 H 1.09000 * 109.82318 * 354.35897 * 9 8 6 38 38 H 1.09004 * 109.41196 * 185.36814 * 10 9 8 39 39 H 1.08999 * 109.41076 * 65.56763 * 10 9 8 40 40 H 1.08999 * 109.47704 * 58.34019 * 14 13 11 41 41 H 1.08997 * 109.47480 * 178.35437 * 14 13 11 42 42 H 1.08995 * 109.59919 * 291.82822 * 15 14 13 43 43 H 1.09002 * 109.59971 * 171.35343 * 15 14 13 44 44 H 0.96997 * 120.00212 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.51748 * 245.59999 * 27 8 6 46 46 H 1.09005 * 109.51764 * 5.77794 * 27 8 6 47 47 H 1.09005 * 109.47082 * 90.00056 * 30 29 28 48 48 H 1.08997 * 109.47433 * 209.99922 * 30 29 28 49 49 H 1.08998 * 109.47785 * 330.00119 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 0.0052 5 6 4.2293 -0.0865 -0.0005 6 6 5.7096 -0.1511 -0.0005 7 8 6.3621 0.8655 -0.1325 8 7 6.3324 -1.3374 0.1460 9 6 5.5756 -2.5422 0.5147 10 6 6.2180 -3.1547 1.7629 11 6 7.7024 -3.3994 1.5126 12 1 8.1488 -3.8184 2.4144 13 8 7.8857 -4.3175 0.4357 14 6 9.2497 -4.6909 0.2190 15 6 10.0676 -3.4471 -0.1444 16 7 9.8210 -2.4080 0.8682 17 6 10.8565 -1.7656 1.4929 18 1 10.6887 -1.2548 2.4296 19 6 12.1220 -1.7711 0.9223 20 7 12.2532 -1.7868 -0.3872 21 14 13.6384 -1.7558 2.0129 22 1 14.1132 -3.1475 2.2200 23 1 14.7090 -0.9594 1.3612 24 1 13.2986 -1.1484 3.3248 25 6 8.4166 -2.0842 1.1861 26 1 8.3522 -1.3989 2.0313 27 6 7.7813 -1.4540 -0.0588 28 7 3.5217 -1.2093 -0.0005 29 6 2.2065 -1.1960 -0.0005 30 6 1.4502 -2.4994 0.0001 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6846 2.1420 0.0004 35 1 4.1692 2.0651 0.0101 36 1 5.6086 -3.2607 -0.3044 37 1 4.5400 -2.2774 0.7281 38 1 5.7288 -4.1008 1.9950 39 1 6.1001 -2.4711 2.6036 40 1 9.6528 -5.1382 1.1276 41 1 9.3039 -5.4124 -0.5962 42 1 9.7619 -3.0821 -1.1249 43 1 11.1281 -3.6985 -0.1597 44 1 13.1374 -1.7903 -0.7860 45 1 7.9769 -2.0844 -0.9263 46 1 8.2067 -0.4640 -0.2234 47 1 1.2678 -2.8132 1.0279 48 1 0.4981 -2.3672 -0.5138 49 1 2.0375 -3.2606 -0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074300547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:10 Heat of formation + Delta-G solvation = -14.012814 kcal Electronic energy + Delta-G solvation = -31635.200729 eV Core-core repulsion = 27563.057786 eV Total energy + Delta-G solvation = -4072.142943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.11192 -41.02827 -39.82879 -37.26353 -36.48376 -35.03633 -34.06503 -33.48119 -33.07732 -31.13131 -29.60041 -29.13369 -28.38001 -26.25517 -25.65589 -24.53707 -23.91861 -23.03229 -22.87850 -21.22704 -19.98802 -18.98243 -18.60961 -17.71023 -17.14252 -17.02686 -16.95169 -16.71061 -16.36535 -16.10155 -15.91359 -15.54290 -15.50703 -15.18407 -14.89727 -14.60494 -14.47733 -14.25702 -13.98359 -13.84422 -13.64850 -13.59462 -13.29864 -13.24216 -13.13711 -12.93067 -12.80485 -12.64298 -12.47922 -12.27026 -12.24136 -12.10829 -11.86903 -11.74091 -11.41218 -11.25910 -10.85261 -10.75976 -10.46208 -9.92363 -9.90296 -9.63367 -8.86208 -8.01927 -5.32039 -0.41421 0.19250 1.42070 1.44323 1.54283 1.61151 1.85952 2.45060 2.71722 2.84965 2.96427 3.08033 3.40350 3.56705 3.78325 3.83692 3.88484 3.93011 4.05657 4.09324 4.16820 4.23610 4.27126 4.41657 4.47662 4.56300 4.60183 4.60859 4.73436 4.75853 4.80049 4.83179 4.84401 4.93082 4.96130 4.97799 5.04783 5.12337 5.17486 5.22741 5.26886 5.30995 5.35341 5.41664 5.54140 5.60945 5.82765 6.16654 6.30854 6.36402 6.69176 6.96337 7.03566 7.67210 8.21627 9.04666 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020193 B = 0.002933 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.296995 B = 9544.234666 C =10425.028737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 C -0.075 4.075 4 C -0.123 4.123 5 C 0.058 3.942 6 C 0.554 3.446 7 O -0.585 6.585 8 N -0.585 5.585 9 C 0.083 3.917 10 C -0.116 4.116 11 C 0.087 3.913 12 H 0.052 0.948 13 O -0.381 6.381 14 C 0.053 3.947 15 C 0.141 3.859 16 N -0.600 5.600 17 C -0.276 4.276 18 H 0.066 0.934 19 C -0.040 4.040 20 N -0.919 5.919 21 Si 0.959 3.041 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.133 3.867 26 H 0.061 0.939 27 C 0.120 3.880 28 N -0.459 5.459 29 C 0.111 3.889 30 C -0.107 4.107 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.174 0.826 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.164 0.836 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.111 0.889 42 H 0.002 0.998 43 H 0.064 0.936 44 H 0.254 0.746 45 H 0.052 0.948 46 H 0.044 0.956 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.186 -2.964 2.450 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.100 4.100 4 C -0.144 4.144 5 C -0.078 4.078 6 C 0.343 3.657 7 O -0.465 6.465 8 N -0.315 5.315 9 C -0.038 4.038 10 C -0.154 4.154 11 C 0.028 3.972 12 H 0.070 0.930 13 O -0.300 6.300 14 C -0.025 4.025 15 C 0.015 3.985 16 N -0.323 5.323 17 C -0.405 4.405 18 H 0.084 0.916 19 C -0.237 4.237 20 N -0.563 5.563 21 Si 0.787 3.213 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.026 3.974 26 H 0.079 0.921 27 C -0.005 4.005 28 N -0.171 5.171 29 C -0.030 4.030 30 C -0.164 4.164 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.192 0.808 35 H 0.155 0.845 36 H 0.081 0.919 37 H 0.180 0.820 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.129 0.871 42 H 0.020 0.980 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.124 0.876 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.336 -3.290 2.179 28.609 hybrid contribution 2.075 1.424 0.087 2.518 sum -26.261 -1.866 2.266 26.425 Atomic orbital electron populations 1.20997 0.86735 1.05027 1.04307 1.21394 0.99801 0.92528 0.96951 1.21880 0.92007 1.00406 0.95751 1.22146 0.96502 0.97803 0.97991 1.20708 0.92034 0.91181 1.03857 1.18620 0.87523 0.82956 0.76619 1.90740 1.67308 1.35433 1.53042 1.48168 1.07854 1.09455 1.66022 1.23111 0.99699 0.84605 0.96391 1.21891 0.91962 1.02956 0.98637 1.22254 0.96871 0.88781 0.89342 0.93025 1.87751 1.26129 1.62835 1.53296 1.23141 0.81847 0.96303 1.01169 1.21324 0.99194 0.88050 0.89889 1.44666 1.00082 1.40858 1.46655 1.19397 0.88278 1.31629 1.01175 0.91619 1.25551 1.00844 1.01158 0.96136 1.70368 1.22950 1.52673 1.10316 0.85383 0.79310 0.77684 0.78943 1.20640 1.22287 1.19543 1.21693 0.84927 0.95785 0.95045 0.92119 1.21867 0.79317 0.99751 0.99534 1.67215 1.08900 1.28293 1.12727 1.22015 0.88625 0.97610 0.94701 1.20966 0.99852 0.90851 1.04741 0.88861 0.89761 0.88912 0.80816 0.84459 0.91906 0.81985 0.87145 0.90084 0.93222 0.87065 0.97990 0.91758 0.93734 0.92970 0.93730 0.88461 0.87579 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 9.62 71.24 0.69 0.21 16 2 C -0.10 -1.34 5.91 -19.70 -0.12 -1.45 16 3 C -0.08 -1.15 9.85 22.45 0.22 -0.93 16 4 C -0.12 -2.99 9.63 22.61 0.22 -2.78 16 5 C 0.06 1.72 6.60 41.91 0.28 1.99 16 6 C 0.55 21.75 7.65 86.88 0.66 22.41 16 7 O -0.58 -27.51 15.79 -3.76 -0.06 -27.57 16 8 N -0.58 -22.53 2.96 -821.94 -2.43 -24.97 16 9 C 0.08 2.49 5.71 86.34 0.49 2.98 16 10 C -0.12 -3.28 5.82 30.48 0.18 -3.10 16 11 C 0.09 3.20 2.72 30.49 0.08 3.28 16 12 H 0.05 1.91 8.12 -2.39 -0.02 1.90 16 13 O -0.38 -14.37 9.59 -148.98 -1.43 -15.80 16 14 C 0.05 2.05 6.97 72.06 0.50 2.56 16 15 C 0.14 6.97 5.13 86.33 0.44 7.41 16 16 N -0.60 -31.55 2.73 -672.36 -1.84 -33.39 16 17 C -0.28 -15.89 9.64 84.03 0.81 -15.08 16 18 H 0.07 3.78 8.00 -2.91 -0.02 3.76 16 19 C -0.04 -2.28 4.58 84.86 0.39 -1.89 16 20 N -0.92 -55.82 11.75 21.65 0.25 -55.56 16 21 Si 0.96 45.88 29.66 68.60 2.03 47.91 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.13 6.08 3.00 44.95 0.13 6.21 16 26 H 0.06 2.89 8.03 -2.38 -0.02 2.87 16 27 C 0.12 5.60 5.63 86.43 0.49 6.09 16 28 N -0.46 -11.15 6.03 -173.10 -1.04 -12.19 16 29 C 0.11 1.83 6.78 42.68 0.29 2.11 16 30 C -0.11 -0.95 9.76 71.23 0.70 -0.25 16 31 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.08 0.19 8.09 -2.39 -0.02 0.17 16 33 H 0.09 0.14 5.95 -2.39 -0.01 0.13 16 34 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 35 H 0.14 3.52 7.66 -2.91 -0.02 3.50 16 36 H 0.06 1.96 7.94 -2.38 -0.02 1.94 16 37 H 0.16 4.26 4.05 -64.59 -0.26 4.00 16 38 H 0.11 2.43 8.14 -2.39 -0.02 2.42 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.00 0.11 7.17 -2.39 -0.02 0.09 16 43 H 0.06 3.48 6.15 -2.39 -0.01 3.46 16 44 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.05 2.57 6.56 -2.39 -0.02 2.55 16 46 H 0.04 2.42 7.01 -2.38 -0.02 2.41 16 47 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.11 0.37 5.94 -2.39 -0.01 0.36 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -77.93 378.87 2.65 -75.27 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.71 Total: 16.51 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 6.45 Total: 29.79 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -5.06 Total: -126.11 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.49 Total: -43.37 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -77.93 2.65 -75.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074300547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.259 kcal (2) G-P(sol) polarization free energy of solvation -77.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds