Wall clock time and date at job start Wed Apr 1 2020 04:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38221 * 120.42377 * 2 1 4 4 N 1.31858 * 120.76679 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72162 * 359.71004 * 4 3 2 6 6 C 1.38174 * 120.76839 * 0.57719 * 5 4 3 7 7 C 1.50700 * 120.42190 * 179.70780 * 6 5 4 8 8 C 1.50693 * 109.47041 * 269.72862 * 7 6 5 9 9 O 1.21284 * 120.00328 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00261 * 179.97438 * 8 7 6 11 11 C 1.46986 * 120.71727 * 0.02562 * 10 8 7 12 12 C 1.53160 * 108.44379 * 125.43470 * 11 10 8 13 13 C 1.52504 * 109.79512 * 54.52104 * 12 11 10 14 14 H 1.09012 * 108.93187 * 181.01158 * 13 12 11 15 15 O 1.42681 * 110.63340 * 61.30568 * 13 12 11 16 16 C 1.43076 * 113.87266 * 174.63630 * 15 13 12 17 17 C 1.53232 * 109.44622 * 61.65012 * 16 15 13 18 18 N 1.47177 * 108.69775 * 308.42127 * 17 16 15 19 19 C 1.36941 * 121.22000 * 230.95485 * 18 17 16 20 20 H 1.08000 * 119.99369 * 153.51536 * 19 18 17 21 21 C 1.38812 * 120.00158 * 333.52425 * 19 18 17 22 22 N 1.31619 * 119.99941 * 343.45935 * 21 19 18 23 23 Si 1.86803 * 120.00043 * 163.46763 * 21 19 18 24 24 H 1.48505 * 109.46797 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46967 * 119.99351 * 23 21 19 26 26 H 1.48496 * 109.46781 * 239.99874 * 23 21 19 27 27 C 1.47586 * 117.55503 * 50.93350 * 18 17 16 28 28 H 1.08997 * 110.31489 * 187.70799 * 27 18 17 29 29 C 1.46790 * 120.72776 * 179.97438 * 10 8 7 30 30 C 1.38638 * 120.41895 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47165 * 269.97604 * 1 2 3 32 32 H 1.08997 * 109.47180 * 29.97363 * 1 2 3 33 33 H 1.09000 * 109.47193 * 149.97778 * 1 2 3 34 34 H 1.08002 * 119.61600 * 359.97438 * 3 2 1 35 35 H 1.08005 * 119.61180 * 180.31221 * 5 4 3 36 36 H 1.08997 * 109.47367 * 149.72321 * 7 6 5 37 37 H 1.09003 * 109.47009 * 29.72578 * 7 6 5 38 38 H 1.08996 * 109.64209 * 5.75357 * 11 10 8 39 39 H 1.09000 * 109.63860 * 245.12078 * 11 10 8 40 40 H 1.08995 * 109.42053 * 294.41657 * 12 11 10 41 41 H 1.08997 * 109.41288 * 174.61541 * 12 11 10 42 42 H 1.09005 * 109.47637 * 181.63683 * 16 15 13 43 43 H 1.09000 * 109.47934 * 301.65815 * 16 15 13 44 44 H 1.09000 * 109.59997 * 68.17944 * 17 16 15 45 45 H 1.08999 * 109.60190 * 188.65755 * 17 16 15 46 46 H 0.96996 * 119.99937 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.52454 * 114.40981 * 29 10 8 48 48 H 1.09007 * 109.57294 * 354.26243 * 29 10 8 49 49 H 1.07999 * 120.78480 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0821 0.0046 6 6 3.5948 -1.1472 -0.0011 7 6 4.4026 -2.4194 -0.0018 8 6 4.6713 -2.8430 -1.4228 9 8 4.2481 -2.1777 -2.3443 10 7 5.3819 -3.9613 -1.6698 11 6 5.9018 -4.7798 -0.5651 12 6 5.4136 -6.2188 -0.7568 13 6 5.8056 -6.7167 -2.1439 14 1 5.4361 -7.7343 -2.2720 15 8 7.2243 -6.7169 -2.2958 16 6 7.6746 -7.2860 -3.5288 17 6 7.1260 -6.4644 -4.7002 18 7 5.6711 -6.3181 -4.5334 19 6 4.8061 -6.6194 -5.5514 20 1 3.7939 -6.9226 -5.3279 21 6 5.2303 -6.5353 -6.8705 22 7 6.3259 -5.8696 -7.1682 23 14 4.2459 -7.3668 -8.2230 24 1 3.0654 -8.0454 -7.6302 25 1 3.7914 -6.3475 -9.2024 26 1 5.0987 -8.3690 -8.9110 27 6 5.1786 -5.8352 -3.2287 28 1 4.0913 -5.9001 -3.1870 29 6 5.6526 -4.3890 -3.0476 30 6 2.2089 -1.1955 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6675 2.1276 -0.0004 35 1 5.3047 0.1284 0.0092 36 1 3.8462 -3.2033 0.5120 37 1 5.3489 -2.2492 0.5117 38 1 5.5328 -4.3912 0.3840 39 1 6.9915 -4.7583 -0.5745 40 1 4.3290 -6.2504 -0.6535 41 1 5.8674 -6.8591 -0.0004 42 1 8.7642 -7.2764 -3.5571 43 1 7.3180 -8.3131 -3.6068 44 1 7.5940 -5.4800 -4.7073 45 1 7.3367 -6.9787 -5.6379 46 1 6.6221 -5.8105 -8.0899 47 1 6.7231 -4.3296 -3.2439 48 1 5.1185 -3.7411 -3.7427 49 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074305652.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:17 Heat of formation + Delta-G solvation = -16.007593 kcal Electronic energy + Delta-G solvation = -31149.416960 eV Core-core repulsion = 27077.187517 eV Total energy + Delta-G solvation = -4072.229443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.63407 -39.89745 -38.52709 -35.77858 -34.68581 -33.74485 -33.64256 -31.80846 -31.52715 -29.69695 -28.44346 -27.44997 -27.15040 -24.78825 -23.91254 -23.28542 -22.79704 -21.70307 -21.34742 -19.33865 -18.27054 -17.16433 -17.06243 -16.86198 -16.78900 -15.70448 -15.50004 -15.33886 -15.07667 -14.65943 -14.35093 -14.31775 -14.21541 -13.76213 -13.52555 -13.29810 -13.18676 -13.12969 -12.83543 -12.79169 -12.66322 -12.51041 -12.33948 -12.13289 -11.96740 -11.53984 -11.38740 -11.09775 -10.97816 -10.80846 -10.63630 -10.25860 -10.20801 -10.03331 -9.83836 -9.66588 -9.52510 -9.45892 -9.03367 -8.85745 -8.62780 -8.26456 -6.78850 -5.88941 -3.33163 1.00290 1.21245 2.84203 3.21736 3.32236 3.40050 3.41991 3.73988 4.28327 4.28955 4.38768 4.54128 4.60026 4.70948 4.86101 4.88211 4.91456 5.00392 5.09769 5.16849 5.26782 5.29044 5.32508 5.35243 5.40834 5.54302 5.60165 5.65908 5.73922 5.74436 5.81732 5.97051 6.00727 6.05245 6.08909 6.11973 6.15435 6.26415 6.32082 6.40161 6.61846 6.64693 6.72644 6.92711 7.05828 7.45288 7.68300 7.71809 7.85059 7.90350 8.27234 8.44015 9.05794 9.67367 10.24569 11.18637 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.002977 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.865922 B = 9402.100636 C =10688.991888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.092 3.908 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.107 4.107 7 C -0.098 4.098 8 C 0.510 3.490 9 O -0.535 6.535 10 N -0.606 5.606 11 C 0.111 3.889 12 C -0.123 4.123 13 C 0.080 3.920 14 H 0.051 0.949 15 O -0.387 6.387 16 C 0.040 3.960 17 C 0.137 3.863 18 N -0.585 5.585 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.905 3.095 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.288 1.288 27 C 0.134 3.866 28 H 0.073 0.927 29 C 0.106 3.894 30 C -0.063 4.063 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.029 0.971 45 H 0.096 0.904 46 H 0.255 0.745 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 4.444 19.132 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.065 4.065 4 N -0.189 5.189 5 C -0.051 4.051 6 C -0.109 4.109 7 C -0.139 4.139 8 C 0.297 3.703 9 O -0.412 6.412 10 N -0.340 5.340 11 C -0.012 4.012 12 C -0.161 4.161 13 C 0.021 3.979 14 H 0.069 0.931 15 O -0.306 6.306 16 C -0.038 4.038 17 C 0.012 3.988 18 N -0.307 5.307 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.215 1.215 27 C 0.026 3.974 28 H 0.092 0.908 29 C -0.017 4.017 30 C -0.089 4.089 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.015 5.690 18.539 19.803 hybrid contribution -0.905 -1.429 -1.135 2.037 sum -4.920 4.260 17.403 18.580 Atomic orbital electron populations 1.20709 0.90255 1.03292 1.02363 1.20886 0.97536 0.94098 1.01471 1.22617 0.90011 0.97359 0.96487 1.67659 1.08356 1.31083 1.11767 1.22549 1.00125 0.87109 0.95331 1.20323 0.94294 0.95545 1.00776 1.20652 1.01483 0.95734 0.95999 1.20374 0.78450 0.80797 0.90684 1.90744 1.50979 1.53230 1.46198 1.48309 1.53116 1.24195 1.08370 1.21673 0.99838 0.90627 0.89043 1.21794 1.01241 0.96239 0.96871 1.22214 0.82647 0.98866 0.94222 0.93057 1.87709 1.20768 1.83212 1.38946 1.23333 0.98198 0.96725 0.85569 1.21472 0.83506 0.97432 0.96417 1.44317 1.02182 1.74775 1.09423 1.19205 0.95268 1.39192 0.84836 0.91324 1.25069 0.98105 0.98714 0.97455 1.70024 1.24882 1.41263 1.18118 0.86177 0.79431 0.78965 0.81926 1.20201 1.21557 1.21460 1.21601 0.97570 0.90789 0.87480 0.90842 1.22302 1.01585 0.97451 0.80361 1.21325 0.93293 0.98280 0.96005 0.91027 0.91177 0.91239 0.83067 0.83091 0.87897 0.87755 0.90346 0.90475 0.90507 0.90377 0.90107 0.94098 0.95319 0.88623 0.93458 0.91344 0.89345 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.04 36.00 0.36 -0.46 16 2 C -0.14 -1.48 5.90 -104.48 -0.62 -2.10 16 3 C 0.09 1.07 10.86 -17.55 -0.19 0.88 16 4 N -0.48 -6.54 10.36 -13.25 -0.14 -6.68 16 5 C 0.11 1.36 10.86 -17.55 -0.19 1.17 16 6 C -0.11 -1.30 4.39 -104.49 -0.46 -1.75 16 7 C -0.10 -1.03 4.21 -29.04 -0.12 -1.15 16 8 C 0.51 7.96 7.69 -10.99 -0.08 7.88 16 9 O -0.53 -10.99 15.45 5.55 0.09 -10.91 16 10 N -0.61 -9.42 2.96 -172.81 -0.51 -9.93 16 11 C 0.11 1.30 6.18 -3.69 -0.02 1.27 16 12 C -0.12 -1.50 5.82 -26.90 -0.16 -1.65 16 13 C 0.08 1.35 2.72 -26.89 -0.07 1.27 16 14 H 0.05 0.90 8.12 -51.92 -0.42 0.48 16 15 O -0.39 -6.91 9.59 -35.23 -0.34 -7.25 16 16 C 0.04 0.74 6.97 37.28 0.26 1.00 16 17 C 0.14 3.15 4.93 -3.55 -0.02 3.13 16 18 N -0.58 -14.11 2.71 -163.90 -0.44 -14.56 16 19 C -0.26 -6.85 9.69 -15.06 -0.15 -7.00 16 20 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 21 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 22 N -0.90 -25.52 11.14 55.49 0.62 -24.90 16 23 Si 0.91 21.41 29.59 -169.99 -5.03 16.38 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.13 2.72 3.02 -67.10 -0.20 2.52 16 28 H 0.07 1.54 7.99 -51.93 -0.42 1.12 16 29 C 0.11 2.13 5.62 -3.75 -0.02 2.11 16 30 C -0.06 -0.72 9.55 -39.27 -0.37 -1.10 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.10 0.81 7.67 -51.93 -0.40 0.42 16 37 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 38 H 0.08 0.62 5.95 -51.93 -0.31 0.31 16 39 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 45 H 0.10 2.43 6.14 -51.93 -0.32 2.12 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.07 1.47 6.56 -51.93 -0.34 1.13 16 48 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 49 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -33.38 386.23 -9.61 -43.00 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.53 Total: 2.94 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.14 Total: 6.09 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.48 Total: -56.07 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.25 Total: -18.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.38 -9.61 -43.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074305652.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.988 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds