Wall clock time and date at job start Wed Apr 1 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38221 * 120.42377 * 2 1 4 4 N 1.31858 * 120.76679 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72162 * 359.71004 * 4 3 2 6 6 C 1.38174 * 120.76839 * 0.57719 * 5 4 3 7 7 C 1.50700 * 120.42190 * 179.70780 * 6 5 4 8 8 C 1.50693 * 109.47041 * 269.72862 * 7 6 5 9 9 O 1.21284 * 120.00328 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00261 * 179.97438 * 8 7 6 11 11 C 1.46986 * 120.71727 * 0.02562 * 10 8 7 12 12 C 1.53160 * 108.44379 * 125.43470 * 11 10 8 13 13 C 1.52504 * 109.79512 * 54.52104 * 12 11 10 14 14 H 1.09012 * 108.93187 * 181.01158 * 13 12 11 15 15 O 1.42681 * 110.63340 * 61.30568 * 13 12 11 16 16 C 1.43076 * 113.87266 * 174.63630 * 15 13 12 17 17 C 1.53232 * 109.44622 * 61.65012 * 16 15 13 18 18 N 1.47177 * 108.69775 * 308.42127 * 17 16 15 19 19 C 1.36941 * 121.22000 * 230.95485 * 18 17 16 20 20 H 1.08000 * 119.99369 * 153.51536 * 19 18 17 21 21 C 1.38812 * 120.00158 * 333.52425 * 19 18 17 22 22 N 1.31619 * 119.99941 * 343.45935 * 21 19 18 23 23 Si 1.86803 * 120.00043 * 163.46763 * 21 19 18 24 24 H 1.48505 * 109.46797 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46967 * 119.99351 * 23 21 19 26 26 H 1.48496 * 109.46781 * 239.99874 * 23 21 19 27 27 C 1.47586 * 117.55503 * 50.93350 * 18 17 16 28 28 H 1.08997 * 110.31489 * 187.70799 * 27 18 17 29 29 C 1.46790 * 120.72776 * 179.97438 * 10 8 7 30 30 C 1.38638 * 120.41895 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47165 * 269.97604 * 1 2 3 32 32 H 1.08997 * 109.47180 * 29.97363 * 1 2 3 33 33 H 1.09000 * 109.47193 * 149.97778 * 1 2 3 34 34 H 1.08002 * 119.61600 * 359.97438 * 3 2 1 35 35 H 1.08005 * 119.61180 * 180.31221 * 5 4 3 36 36 H 1.08997 * 109.47367 * 149.72321 * 7 6 5 37 37 H 1.09003 * 109.47009 * 29.72578 * 7 6 5 38 38 H 1.08996 * 109.64209 * 5.75357 * 11 10 8 39 39 H 1.09000 * 109.63860 * 245.12078 * 11 10 8 40 40 H 1.08995 * 109.42053 * 294.41657 * 12 11 10 41 41 H 1.08997 * 109.41288 * 174.61541 * 12 11 10 42 42 H 1.09005 * 109.47637 * 181.63683 * 16 15 13 43 43 H 1.09000 * 109.47934 * 301.65815 * 16 15 13 44 44 H 1.09000 * 109.59997 * 68.17944 * 17 16 15 45 45 H 1.08999 * 109.60190 * 188.65755 * 17 16 15 46 46 H 0.96996 * 119.99937 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.52454 * 114.40981 * 29 10 8 48 48 H 1.09007 * 109.57294 * 354.26243 * 29 10 8 49 49 H 1.07999 * 120.78480 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0821 0.0046 6 6 3.5948 -1.1472 -0.0011 7 6 4.4026 -2.4194 -0.0018 8 6 4.6713 -2.8430 -1.4228 9 8 4.2481 -2.1777 -2.3443 10 7 5.3819 -3.9613 -1.6698 11 6 5.9018 -4.7798 -0.5651 12 6 5.4136 -6.2188 -0.7568 13 6 5.8056 -6.7167 -2.1439 14 1 5.4361 -7.7343 -2.2720 15 8 7.2243 -6.7169 -2.2958 16 6 7.6746 -7.2860 -3.5288 17 6 7.1260 -6.4644 -4.7002 18 7 5.6711 -6.3181 -4.5334 19 6 4.8061 -6.6194 -5.5514 20 1 3.7939 -6.9226 -5.3279 21 6 5.2303 -6.5353 -6.8705 22 7 6.3259 -5.8696 -7.1682 23 14 4.2459 -7.3668 -8.2230 24 1 3.0654 -8.0454 -7.6302 25 1 3.7914 -6.3475 -9.2024 26 1 5.0987 -8.3690 -8.9110 27 6 5.1786 -5.8352 -3.2287 28 1 4.0913 -5.9001 -3.1870 29 6 5.6526 -4.3890 -3.0476 30 6 2.2089 -1.1955 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6675 2.1276 -0.0004 35 1 5.3047 0.1284 0.0092 36 1 3.8462 -3.2033 0.5120 37 1 5.3489 -2.2492 0.5117 38 1 5.5328 -4.3912 0.3840 39 1 6.9915 -4.7583 -0.5745 40 1 4.3290 -6.2504 -0.6535 41 1 5.8674 -6.8591 -0.0004 42 1 8.7642 -7.2764 -3.5571 43 1 7.3180 -8.3131 -3.6068 44 1 7.5940 -5.4800 -4.7073 45 1 7.3367 -6.9787 -5.6379 46 1 6.6221 -5.8105 -8.0899 47 1 6.7231 -4.3296 -3.2439 48 1 5.1185 -3.7411 -3.7427 49 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074305652.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:16 Heat of formation + Delta-G solvation = -38.035416 kcal Electronic energy + Delta-G solvation = -31150.372158 eV Core-core repulsion = 27077.187517 eV Total energy + Delta-G solvation = -4073.184641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71629 -41.06351 -39.90639 -37.13162 -36.45624 -34.66068 -34.48010 -33.47177 -33.03275 -31.16529 -29.72270 -28.70374 -28.15151 -26.06695 -25.62482 -24.49007 -24.08299 -22.93504 -22.47178 -20.72867 -19.60348 -18.91216 -18.23762 -17.91003 -17.67478 -17.09918 -16.99823 -16.88733 -16.50703 -16.18584 -15.67729 -15.55424 -15.19379 -15.06858 -14.85569 -14.63717 -14.35508 -14.15446 -13.97867 -13.95199 -13.75702 -13.49365 -13.38123 -13.27103 -13.09588 -13.08280 -12.84577 -12.63506 -12.45604 -12.29558 -12.22180 -12.07287 -11.86085 -11.66640 -11.21618 -10.97994 -10.78412 -10.53690 -10.46171 -10.40364 -9.71805 -9.67373 -8.72348 -7.95128 -5.42683 0.13715 0.34871 1.41138 1.42971 1.53467 1.65122 2.01430 2.44252 2.83432 2.91304 3.19709 3.43935 3.48107 3.65209 3.74192 3.85229 3.93064 4.02737 4.07356 4.09634 4.16552 4.22477 4.25710 4.29359 4.43312 4.45787 4.53713 4.56062 4.63774 4.66043 4.78416 4.83297 4.84026 4.87896 4.91921 4.93460 5.00175 5.07413 5.19412 5.24671 5.26595 5.32794 5.34304 5.48236 5.56587 5.58520 5.80963 6.24498 6.35676 6.52162 7.01978 7.02604 7.22105 7.69402 8.23329 9.09797 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.002977 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.865922 B = 9402.100636 C =10688.991888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.141 4.141 3 C 0.077 3.923 4 N -0.510 5.510 5 C 0.084 3.916 6 C -0.118 4.118 7 C -0.084 4.084 8 C 0.506 3.494 9 O -0.595 6.595 10 N -0.604 5.604 11 C 0.107 3.893 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.048 0.952 15 O -0.381 6.381 16 C 0.053 3.947 17 C 0.144 3.856 18 N -0.604 5.604 19 C -0.265 4.265 20 H 0.067 0.933 21 C -0.047 4.047 22 N -0.932 5.932 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.296 1.296 26 H -0.285 1.285 27 C 0.131 3.869 28 H 0.062 0.938 29 C 0.126 3.874 30 C -0.077 4.077 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.046 0.954 44 H -0.001 1.001 45 H 0.066 0.934 46 H 0.251 0.749 47 H 0.046 0.954 48 H 0.037 0.963 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 3.156 22.765 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C -0.080 4.080 4 N -0.218 5.218 5 C -0.073 4.073 6 C -0.120 4.120 7 C -0.123 4.123 8 C 0.296 3.704 9 O -0.476 6.476 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.154 4.154 13 C 0.024 3.976 14 H 0.066 0.934 15 O -0.300 6.300 16 C -0.025 4.025 17 C 0.019 3.981 18 N -0.327 5.327 19 C -0.395 4.395 20 H 0.084 0.916 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.190 1.190 25 H -0.223 1.223 26 H -0.211 1.211 27 C 0.024 3.976 28 H 0.080 0.920 29 C 0.000 4.000 30 C -0.103 4.103 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.190 0.810 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.977 4.377 22.249 23.215 hybrid contribution -0.658 -0.942 -2.256 2.532 sum -5.635 3.434 19.993 21.054 Atomic orbital electron populations 1.20768 0.88026 1.03812 1.03740 1.21258 0.99221 0.93639 1.00149 1.23062 0.89706 0.98814 0.96369 1.67635 1.09526 1.31883 1.12790 1.22818 1.00779 0.87576 0.96092 1.20518 0.94878 0.95870 1.00736 1.20712 1.03555 0.95941 0.92129 1.21367 0.76920 0.79680 0.92458 1.90725 1.53257 1.54965 1.48640 1.48337 1.53171 1.24933 1.07269 1.22056 0.99993 0.89925 0.89450 1.21866 1.02655 0.96798 0.94099 1.22300 0.81656 0.97860 0.95746 0.93397 1.87728 1.21425 1.83028 1.37830 1.23140 0.99562 0.95762 0.84014 1.21294 0.83203 0.96289 0.97314 1.44557 1.02400 1.75446 1.10303 1.19495 0.95586 1.38527 0.85922 0.91551 1.25817 0.99311 0.99626 0.99525 1.70182 1.26567 1.42895 1.18097 0.85187 0.78420 0.77732 0.78980 1.18986 1.22276 1.21086 1.21764 0.97201 0.91557 0.87104 0.91980 1.21642 0.99127 0.96472 0.82724 1.21692 0.93448 0.99345 0.95791 0.89087 0.90280 0.91103 0.81030 0.82323 0.83991 0.84352 0.85019 0.90583 0.88755 0.86852 0.87433 0.93555 0.98262 0.91613 0.93950 0.93532 0.94480 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.04 71.23 0.72 -0.66 16 2 C -0.14 -2.81 5.90 -19.77 -0.12 -2.93 16 3 C 0.08 1.73 10.86 84.68 0.92 2.65 16 4 N -0.51 -13.80 10.36 -195.84 -2.03 -15.83 16 5 C 0.08 2.10 10.86 84.67 0.92 3.02 16 6 C -0.12 -2.64 4.39 -19.78 -0.09 -2.72 16 7 C -0.08 -1.44 4.21 29.10 0.12 -1.32 16 8 C 0.51 15.22 7.69 87.65 0.67 15.89 16 9 O -0.60 -25.26 15.45 -3.04 -0.05 -25.31 16 10 N -0.60 -17.98 2.96 -819.02 -2.43 -20.41 16 11 C 0.11 2.01 6.18 86.34 0.53 2.55 16 12 C -0.12 -2.29 5.82 30.48 0.18 -2.11 16 13 C 0.08 2.65 2.72 30.49 0.08 2.73 16 14 H 0.05 1.58 8.12 -2.38 -0.02 1.56 16 15 O -0.38 -12.86 9.59 -148.98 -1.43 -14.29 16 16 C 0.05 1.94 6.97 72.06 0.50 2.44 16 17 C 0.14 6.92 4.93 86.33 0.43 7.35 16 18 N -0.60 -30.31 2.71 -672.45 -1.82 -32.14 16 19 C -0.27 -14.74 9.69 84.03 0.81 -13.92 16 20 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 21 C -0.05 -2.64 4.96 84.86 0.42 -2.22 16 22 N -0.93 -55.59 11.14 21.65 0.24 -55.35 16 23 Si 0.97 45.31 29.59 68.60 2.03 47.34 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 C 0.13 5.41 3.02 44.94 0.14 5.55 16 28 H 0.06 2.66 7.99 -2.39 -0.02 2.64 16 29 C 0.13 5.25 5.62 86.41 0.49 5.74 16 30 C -0.08 -1.62 9.55 22.47 0.21 -1.41 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 33 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 34 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.14 1.39 7.67 -2.39 -0.02 1.38 16 37 H 0.14 1.50 7.88 -2.39 -0.02 1.48 16 38 H 0.13 1.17 5.95 -2.39 -0.01 1.16 16 39 H 0.08 1.53 7.95 -2.39 -0.02 1.52 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.00 -0.04 7.17 -2.39 -0.02 -0.05 16 45 H 0.07 3.52 6.14 -2.39 -0.01 3.51 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.05 2.12 6.56 -2.39 -0.02 2.10 16 48 H 0.04 1.90 7.00 -2.38 -0.02 1.88 16 49 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -80.59 386.23 2.40 -78.19 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.95 Total: 17.18 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.94 Total: 20.62 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -6.04 Total: -123.73 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.48 Total: -39.59 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -80.59 2.40 -78.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074305652.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.152 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds