Wall clock time and date at job start Wed Apr 1 2020 04:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38221 * 120.42029 * 2 1 4 4 N 1.31859 * 120.76732 * 179.74348 * 3 2 1 5 5 C 1.31888 * 121.72383 * 0.57355 * 4 3 2 6 6 C 1.38188 * 120.76234 * 359.43197 * 5 4 3 7 7 C 1.50696 * 120.41927 * 180.25192 * 6 5 4 8 8 C 1.50707 * 109.46776 * 89.99705 * 7 6 5 9 9 O 1.21271 * 120.00205 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99611 * 180.02562 * 8 7 6 11 11 C 1.46839 * 120.41095 * 359.97438 * 10 8 7 12 12 C 1.53371 * 109.25090 * 232.22919 * 11 10 8 13 13 C 1.52783 * 108.81814 * 306.17137 * 12 11 10 14 14 H 1.09003 * 109.34572 * 302.83821 * 13 12 11 15 15 O 1.42603 * 111.11029 * 182.04610 * 13 12 11 16 16 C 1.43217 * 113.59234 * 175.88705 * 15 13 12 17 17 C 1.53194 * 109.35776 * 62.43983 * 16 15 13 18 18 N 1.47348 * 108.80203 * 308.56145 * 17 16 15 19 19 C 1.36936 * 121.30755 * 230.21907 * 18 17 16 20 20 H 1.08007 * 120.00147 * 152.52182 * 19 18 17 21 21 C 1.38810 * 119.99816 * 332.52034 * 19 18 17 22 22 N 1.31616 * 119.99957 * 344.74439 * 21 19 18 23 23 Si 1.86807 * 119.99912 * 164.73961 * 21 19 18 24 24 H 1.48494 * 109.46999 * 89.99890 * 23 21 19 25 25 H 1.48499 * 109.47011 * 209.99988 * 23 21 19 26 26 H 1.48494 * 109.47015 * 329.99870 * 23 21 19 27 27 C 1.46871 * 117.38897 * 50.23972 * 18 17 16 28 28 H 1.09003 * 109.65875 * 67.64938 * 27 18 17 29 29 C 1.47131 * 120.40656 * 179.72684 * 10 8 7 30 30 C 1.38635 * 120.41927 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47201 * 269.97176 * 1 2 3 32 32 H 1.08996 * 109.47296 * 29.97407 * 1 2 3 33 33 H 1.09006 * 109.46972 * 149.97474 * 1 2 3 34 34 H 1.07999 * 119.62082 * 0.05090 * 3 2 1 35 35 H 1.07996 * 119.62225 * 179.70557 * 5 4 3 36 36 H 1.08999 * 109.47799 * 209.99754 * 7 6 5 37 37 H 1.09002 * 109.47148 * 330.00550 * 7 6 5 38 38 H 1.08994 * 109.51351 * 352.16634 * 11 10 8 39 39 H 1.08999 * 109.50410 * 112.25386 * 11 10 8 40 40 H 1.08997 * 109.57687 * 65.97143 * 12 11 10 41 41 H 1.08998 * 109.57997 * 186.37249 * 12 11 10 42 42 H 1.09005 * 109.80370 * 302.36656 * 16 15 13 43 43 H 1.08998 * 109.38692 * 182.26901 * 16 15 13 44 44 H 1.09000 * 109.58823 * 188.76397 * 17 16 15 45 45 H 1.08997 * 109.69413 * 68.42006 * 17 16 15 46 46 H 0.97009 * 119.99789 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.72343 * 246.44674 * 29 10 8 48 48 H 1.08996 * 109.73096 * 7.11655 * 29 10 8 49 49 H 1.07992 * 120.78928 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5254 1.1999 0.0051 5 6 4.2257 0.0824 -0.0009 6 6 3.5948 -1.1471 -0.0011 7 6 4.4026 -2.4192 -0.0022 8 6 4.6729 -2.8439 1.4183 9 8 4.2507 -2.1793 2.3406 10 7 5.3839 -3.9624 1.6636 11 6 5.8989 -4.7741 0.5536 12 6 5.4701 -6.2331 0.7527 13 6 5.9099 -6.6907 2.1425 14 1 6.9878 -6.5616 2.2409 15 8 5.5762 -8.0597 2.3620 16 6 6.0477 -8.5710 3.6139 17 6 5.3854 -7.7991 4.7595 18 7 5.5624 -6.3554 4.5242 19 6 6.0477 -5.5292 5.5025 20 1 6.5792 -4.6281 5.2338 21 6 5.8566 -5.8497 6.8395 22 7 4.9702 -6.7621 7.1772 23 14 6.8577 -4.9862 8.1593 24 1 6.1394 -3.7658 8.6061 25 1 7.0468 -5.9001 9.3143 26 1 8.1825 -4.6064 7.6065 27 6 5.1974 -5.8371 3.1993 28 1 4.1184 -5.9087 3.0620 29 6 5.6582 -4.3820 3.0468 30 6 2.2089 -1.1955 -0.0005 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5143 34 1 1.6675 2.1276 0.0008 35 1 5.3047 0.1285 -0.0013 36 1 3.8458 -3.2029 -0.5160 37 1 5.3484 -2.2486 -0.5165 38 1 5.4954 -4.4014 -0.3878 39 1 6.9870 -4.7134 0.5326 40 1 4.3861 -6.3099 0.6689 41 1 5.9423 -6.8592 -0.0043 42 1 7.1297 -8.4546 3.6764 43 1 5.7916 -9.6275 3.6928 44 1 5.8531 -8.0752 5.7046 45 1 4.3220 -8.0357 4.7954 46 1 4.8364 -6.9859 8.1116 47 1 6.7269 -4.3090 3.2483 48 1 5.1082 -3.7460 3.7403 49 1 1.6888 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074305653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:22 Heat of formation + Delta-G solvation = -15.820311 kcal Electronic energy + Delta-G solvation = -31040.518972 eV Core-core repulsion = 26968.297650 eV Total energy + Delta-G solvation = -4072.221322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68267 -39.89730 -38.54658 -36.10895 -34.74264 -33.77879 -33.67540 -31.83966 -31.41426 -30.00120 -28.44975 -27.45455 -26.90162 -25.06292 -23.97088 -23.35209 -22.25968 -21.75928 -21.06148 -19.73588 -18.82503 -17.23169 -17.09764 -16.86781 -16.80303 -15.74326 -15.48435 -15.34886 -15.09794 -14.68095 -14.43691 -14.25990 -13.98063 -13.83705 -13.54911 -13.30632 -13.16218 -13.10409 -12.97329 -12.83393 -12.77276 -12.67708 -12.54396 -12.14534 -11.92937 -11.56430 -11.38492 -11.04292 -10.96655 -10.87307 -10.62080 -10.29806 -10.26105 -10.01397 -9.90279 -9.65906 -9.55254 -9.52590 -9.02005 -8.88949 -8.56034 -8.40005 -6.75579 -5.86274 -3.31728 0.97326 1.18838 2.74190 3.08412 3.34735 3.41756 3.42768 3.69982 4.19637 4.25895 4.41056 4.50513 4.57540 4.61986 4.82111 4.83706 4.86335 4.94888 5.12655 5.14310 5.22492 5.27202 5.34686 5.35948 5.37198 5.48586 5.52566 5.63980 5.64810 5.70423 5.79492 5.85488 5.90111 6.05663 6.06428 6.10619 6.12884 6.20675 6.29728 6.42391 6.58819 6.60723 6.67105 6.83414 7.09532 7.47803 7.55307 7.69130 7.85158 7.87670 8.29486 8.32784 9.07609 9.71043 10.28546 11.21881 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.003052 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.987599 B = 9172.747086 C =10445.109502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.093 3.907 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.109 4.109 7 C -0.098 4.098 8 C 0.513 3.487 9 O -0.529 6.529 10 N -0.612 5.612 11 C 0.111 3.889 12 C -0.125 4.125 13 C 0.076 3.924 14 H 0.053 0.947 15 O -0.390 6.390 16 C 0.039 3.961 17 C 0.142 3.858 18 N -0.588 5.588 19 C -0.259 4.259 20 H 0.072 0.928 21 C 0.007 3.993 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.138 3.862 28 H 0.036 0.964 29 C 0.124 3.876 30 C -0.063 4.063 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.028 0.972 46 H 0.255 0.745 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.398 6.004 -19.137 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.064 4.064 4 N -0.189 5.189 5 C -0.051 4.051 6 C -0.111 4.111 7 C -0.139 4.139 8 C 0.300 3.700 9 O -0.405 6.405 10 N -0.346 5.346 11 C -0.013 4.013 12 C -0.163 4.163 13 C 0.016 3.984 14 H 0.071 0.929 15 O -0.309 6.309 16 C -0.039 4.039 17 C 0.017 3.983 18 N -0.313 5.313 19 C -0.388 4.388 20 H 0.089 0.911 21 C -0.192 4.192 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.030 3.970 28 H 0.054 0.946 29 C 0.003 3.997 30 C -0.089 4.089 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.120 0.880 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.316 7.018 -18.551 19.969 hybrid contribution 0.172 -0.550 1.101 1.243 sum -2.144 6.467 -17.450 18.733 Atomic orbital electron populations 1.20717 0.90220 1.02919 1.02809 1.20892 0.97572 0.94082 1.01364 1.22622 0.89998 0.97371 0.96411 1.67660 1.08364 1.31076 1.11777 1.22544 1.00107 0.87100 0.95349 1.20307 0.94293 0.95470 1.01014 1.20658 1.01594 0.95882 0.95754 1.20385 0.78088 0.80675 0.90848 1.90752 1.50459 1.53180 1.46102 1.48295 1.53717 1.24555 1.08043 1.21720 0.99419 0.90576 0.89548 1.21849 1.02573 0.94942 0.96969 1.22442 0.98183 0.83419 0.94315 0.92919 1.87754 1.79517 1.25205 1.38415 1.23346 0.97818 0.97606 0.85082 1.21434 0.98017 0.82627 0.96245 1.44032 1.75416 1.03317 1.08495 1.19116 1.28715 1.05667 0.85321 0.91084 1.25072 0.97470 0.99061 0.97589 1.70017 1.33097 1.34723 1.16642 0.86289 0.80080 0.78960 0.81444 1.21174 1.21469 1.20363 1.21383 0.96600 0.91305 0.87756 0.94613 1.21841 1.01325 0.96087 0.80474 1.21339 0.93303 0.98332 0.95902 0.90747 0.91248 0.91346 0.83037 0.83087 0.87732 0.87637 0.89544 0.91049 0.90845 0.90206 0.94003 0.90065 0.88740 0.95414 0.93478 0.90944 0.88025 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.04 36.00 0.36 -0.46 16 2 C -0.14 -1.45 5.90 -104.48 -0.62 -2.07 16 3 C 0.09 1.05 10.86 -17.55 -0.19 0.86 16 4 N -0.48 -6.39 10.36 -13.25 -0.14 -6.52 16 5 C 0.11 1.31 10.86 -17.55 -0.19 1.12 16 6 C -0.11 -1.27 4.39 -104.48 -0.46 -1.73 16 7 C -0.10 -0.97 4.20 -29.03 -0.12 -1.09 16 8 C 0.51 7.66 7.69 -10.98 -0.08 7.58 16 9 O -0.53 -10.50 15.43 5.57 0.09 -10.41 16 10 N -0.61 -9.00 2.98 -172.45 -0.51 -9.52 16 11 C 0.11 1.17 6.31 -3.67 -0.02 1.15 16 12 C -0.12 -1.57 5.82 -26.65 -0.16 -1.73 16 13 C 0.08 1.33 2.49 -26.63 -0.07 1.26 16 14 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 15 O -0.39 -7.46 10.47 -35.23 -0.37 -7.83 16 16 C 0.04 0.76 6.97 37.26 0.26 1.02 16 17 C 0.14 3.36 5.41 -3.48 -0.02 3.34 16 18 N -0.59 -14.47 3.04 -164.12 -0.50 -14.97 16 19 C -0.26 -6.91 8.88 -15.06 -0.13 -7.04 16 20 H 0.07 1.85 6.28 -52.48 -0.33 1.52 16 21 C 0.01 0.20 4.99 -17.43 -0.09 0.11 16 22 N -0.90 -25.80 11.15 55.49 0.62 -25.18 16 23 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.14 2.86 3.03 -67.32 -0.20 2.66 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 C 0.12 2.37 4.50 -3.50 -0.02 2.36 16 30 C -0.06 -0.71 9.55 -39.27 -0.37 -1.08 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.10 0.79 7.61 -51.93 -0.40 0.40 16 37 H 0.11 0.74 7.91 -51.93 -0.41 0.33 16 38 H 0.09 0.61 5.91 -51.93 -0.31 0.30 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.43 6.23 -51.93 -0.32 2.11 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.07 1.39 7.40 -51.93 -0.38 1.00 16 48 H 0.10 2.30 6.80 -51.93 -0.35 1.94 16 49 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -34.11 386.27 -9.69 -43.80 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.55 Total: 2.02 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.12 Total: 6.25 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.53 Total: -56.19 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.28 Total: -18.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.11 -9.69 -43.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074305653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.979 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds