Wall clock time and date at job start Wed Apr 1 2020 04:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35682 * 117.00009 * 2 1 4 4 C 1.38899 * 119.62656 * 180.02562 * 3 2 1 5 5 C 1.39573 * 118.94629 * 179.97438 * 4 3 2 6 6 C 1.48162 * 120.88950 * 179.97438 * 5 4 3 7 7 O 1.21509 * 119.99874 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99590 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99539 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.88633 * 334.67101 * 9 8 6 11 11 C 1.53954 * 113.65721 * 106.01578 * 9 8 6 12 12 C 1.54146 * 87.22707 * 89.86472 * 11 9 8 13 13 H 1.08999 * 113.80809 * 139.15791 * 12 11 9 14 14 N 1.46499 * 113.57639 * 270.18169 * 12 11 9 15 15 C 1.36942 * 119.99716 * 252.18142 * 14 12 11 16 16 H 1.07998 * 119.99999 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99695 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00199 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46730 * 60.00058 * 19 17 15 21 21 H 1.48501 * 109.47194 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47165 * 300.00395 * 19 17 15 23 23 C 1.52906 * 113.66236 * 203.32274 * 9 8 6 24 24 C 1.52907 * 121.13720 * 144.62010 * 23 9 8 25 25 C 1.53956 * 86.78503 * 209.38073 * 24 23 9 26 26 C 1.52908 * 121.14082 * 36.05732 * 23 9 8 27 27 C 1.39966 * 118.21759 * 0.27614 * 5 4 3 28 28 C 1.37982 * 119.13314 * 359.45044 * 27 5 4 29 29 C 1.50700 * 119.50968 * 180.27305 * 28 27 5 30 30 N 1.31906 * 120.97480 * 0.56420 * 28 27 5 31 31 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46912 * 299.99152 * 1 2 3 33 33 H 1.08994 * 109.47567 * 59.99333 * 1 2 3 34 34 H 1.07998 * 120.51939 * 359.95692 * 4 3 2 35 35 H 0.97000 * 120.00748 * 0.02562 * 8 6 5 36 36 H 1.08999 * 113.57483 * 204.43148 * 11 9 8 37 37 H 1.08992 * 113.58410 * 335.22604 * 11 9 8 38 38 H 0.96995 * 119.99877 * 72.18404 * 14 12 11 39 39 H 0.97001 * 120.00162 * 180.02562 * 18 17 15 40 40 H 1.09005 * 113.66022 * 323.85208 * 24 23 9 41 41 H 1.09001 * 113.66746 * 94.90349 * 24 23 9 42 42 H 1.08994 * 113.57689 * 270.12977 * 25 24 23 43 43 H 1.08998 * 113.65135 * 139.34519 * 25 24 23 44 44 H 1.08994 * 113.66294 * 265.09463 * 26 23 9 45 45 H 1.09005 * 113.66080 * 36.04858 * 26 23 9 46 46 H 1.08001 * 120.43300 * 179.72877 * 27 5 4 47 47 H 1.08999 * 109.47596 * 270.28600 * 29 28 27 48 48 H 1.09004 * 109.46644 * 30.28788 * 29 28 27 49 49 H 1.09001 * 109.46944 * 150.28260 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2726 -0.0005 5 6 4.0513 2.5236 -0.0011 6 6 5.5283 2.6417 -0.0011 7 8 6.0500 3.7390 -0.0020 8 7 6.2929 1.5318 -0.0011 9 6 7.7533 1.6486 -0.0017 10 1 8.1034 2.5870 -0.4317 11 6 8.4006 1.3103 1.3536 12 6 8.4837 -0.1493 0.8649 13 1 9.4167 -0.6484 1.1265 14 7 7.2994 -0.9460 1.1946 15 6 7.3703 -1.9079 2.1667 16 1 8.2994 -2.0795 2.6899 17 6 6.2479 -2.6624 2.4796 18 7 5.1158 -2.4537 1.8416 19 14 6.3447 -3.9751 3.8051 20 1 6.7266 -3.3479 5.0958 21 1 5.0215 -4.6341 3.9467 22 1 7.3633 -4.9872 3.4261 23 6 8.4673 0.4153 -0.5561 24 6 9.7553 0.5465 -1.3697 25 6 9.3262 -0.7422 -2.0945 26 6 7.8770 -0.3845 -1.7179 27 6 3.2393 3.6636 0.0049 28 6 1.8679 3.5116 -0.0005 29 6 0.9856 4.7333 -0.0004 30 7 1.3178 2.3127 0.0000 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 4.0230 0.3683 -0.0003 35 1 5.8764 0.6558 -0.0015 36 1 9.3746 1.7771 1.5001 37 1 7.7320 1.4494 2.2030 38 1 6.4651 -0.7921 0.7245 39 1 4.3314 -2.9807 2.0605 40 1 9.7776 1.4247 -2.0150 41 1 10.6618 0.4329 -0.7752 42 1 9.6888 -1.6524 -1.6169 43 1 9.5151 -0.7238 -3.1678 44 1 7.2829 -1.2418 -1.4016 45 1 7.3699 0.2318 -2.4604 46 1 3.6804 4.6495 0.0091 47 1 0.7732 5.0281 1.0273 48 1 1.4942 5.5487 -0.5147 49 1 0.0512 4.5066 -0.5139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078711534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:19 Heat of formation + Delta-G solvation = 24.990846 kcal Electronic energy + Delta-G solvation = -31237.758769 eV Core-core repulsion = 27167.307152 eV Total energy + Delta-G solvation = -4070.451617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94568 -40.40985 -38.81083 -37.68561 -35.28421 -33.83181 -33.25641 -31.97495 -31.68574 -29.85599 -28.30776 -26.59695 -25.54596 -25.09674 -24.17236 -23.88260 -22.65285 -22.21074 -20.47546 -19.97305 -18.70969 -17.77210 -17.17574 -16.70124 -16.52133 -15.97836 -15.64642 -15.56398 -15.17068 -14.76654 -14.67392 -14.38521 -14.20697 -14.04094 -13.89261 -13.48966 -13.07029 -12.91150 -12.62758 -12.43879 -12.42981 -12.12909 -12.12441 -11.91962 -11.62069 -11.53238 -11.37299 -10.98883 -10.92270 -10.88318 -10.71114 -10.24871 -10.15595 -10.05802 -9.79617 -9.77531 -9.76448 -9.52801 -9.40949 -8.90691 -8.56670 -8.36893 -7.08779 -5.87511 -3.16693 0.78062 1.18914 3.02339 3.08859 3.30986 3.39445 3.44884 3.45074 3.87567 4.12527 4.46074 4.67379 4.75360 4.92545 4.98800 5.02208 5.12441 5.14819 5.16231 5.30359 5.31603 5.35184 5.38938 5.41275 5.46382 5.52316 5.64516 5.65256 5.81142 5.84253 5.88720 5.91186 5.97207 5.99270 6.01518 6.15364 6.17661 6.23513 6.32796 6.37161 6.50321 6.59258 6.66298 6.78117 6.90594 7.04844 7.30657 7.64034 7.77404 7.84652 8.30440 8.39257 9.41793 9.94733 10.28664 11.34834 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007991 B = 0.004443 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.951672 B = 6300.251615 C = 8634.222780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.295 6.295 3 C 0.327 3.673 4 C -0.152 4.152 5 C -0.050 4.050 6 C 0.562 3.438 7 O -0.540 6.540 8 N -0.686 5.686 9 C 0.136 3.864 10 H 0.093 0.907 11 C -0.185 4.185 12 C 0.191 3.809 13 H 0.068 0.932 14 N -0.699 5.699 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.006 4.006 18 N -0.929 5.929 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.129 4.129 24 C -0.106 4.106 25 C -0.133 4.133 26 C -0.128 4.128 27 C -0.157 4.157 28 C 0.155 3.845 29 C -0.101 4.101 30 N -0.530 5.530 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.155 0.845 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.378 0.622 39 H 0.259 0.741 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.147 0.853 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.786 9.809 -7.645 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.201 6.201 3 C 0.148 3.852 4 C -0.173 4.173 5 C -0.060 4.060 6 C 0.348 3.652 7 O -0.418 6.418 8 N -0.338 5.338 9 C 0.031 3.969 10 H 0.111 0.889 11 C -0.227 4.227 12 C 0.079 3.921 13 H 0.086 0.914 14 N -0.338 5.338 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.171 4.171 26 C -0.166 4.166 27 C -0.178 4.178 28 C 0.019 3.981 29 C -0.158 4.158 30 N -0.256 5.256 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.173 0.827 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.213 0.787 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.165 0.835 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.197 10.031 -7.496 13.207 hybrid contribution 0.071 -1.019 0.740 1.261 sum -4.126 9.012 -6.756 11.995 Atomic orbital electron populations 1.22846 0.77542 1.02985 1.02043 1.86382 1.22555 1.23718 1.87407 1.19600 0.89012 0.84568 0.92041 1.21419 0.92798 0.98964 1.04126 1.20161 0.93898 0.93132 0.98836 1.18022 0.85811 0.84617 0.76727 1.90725 1.74214 1.26356 1.50491 1.45683 1.06594 1.09095 1.72450 1.21704 0.78700 0.98345 0.98163 0.88915 1.24320 1.00131 1.01240 0.97030 1.20926 0.92109 0.89892 0.89205 0.91427 1.42089 1.07576 1.40295 1.43881 1.19197 0.96370 1.10365 1.11836 0.90933 1.24717 0.95736 0.99959 0.99875 1.69582 1.00764 1.43340 1.43955 0.86262 0.76611 0.81607 0.81630 1.21270 1.21669 1.21224 1.23582 0.97107 0.96129 0.96382 1.22511 0.95972 0.98094 0.97795 1.22740 0.97061 0.97910 0.99378 1.22588 0.96670 1.00401 0.96891 1.21835 0.93211 0.99580 1.03217 1.20814 0.91582 0.91869 0.93846 1.20716 0.98973 0.92828 1.03293 1.66967 1.41267 0.98453 1.18878 0.88583 0.92433 0.92551 0.82698 0.75188 0.90289 0.90887 0.78656 0.93149 0.90298 0.91295 0.90036 0.92163 0.90133 0.90944 0.83507 0.90181 0.90331 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 101.05 1.05 1.54 16 2 O -0.29 -4.83 10.47 -18.75 -0.20 -5.03 16 3 C 0.33 5.42 7.49 -17.16 -0.13 5.29 16 4 C -0.15 -2.58 9.55 -38.84 -0.37 -2.95 16 5 C -0.05 -0.82 5.91 -104.68 -0.62 -1.44 16 6 C 0.56 10.04 7.80 -12.18 -0.10 9.94 16 7 O -0.54 -10.55 16.06 5.36 0.09 -10.46 16 8 N -0.69 -12.04 4.89 -54.21 -0.26 -12.30 16 9 C 0.14 2.28 4.09 -67.48 -0.28 2.00 16 10 H 0.09 1.54 7.50 -51.93 -0.39 1.15 16 11 C -0.19 -3.27 7.70 -25.64 -0.20 -3.46 16 12 C 0.19 3.61 4.37 -67.38 -0.29 3.31 16 13 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 14 N -0.70 -16.07 4.74 -52.89 -0.25 -16.32 16 15 C -0.25 -6.45 9.97 -15.06 -0.15 -6.60 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 19 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.13 -2.04 0.78 -154.71 -0.12 -2.16 16 24 C -0.11 -1.37 7.84 -26.28 -0.21 -1.58 16 25 C -0.13 -1.79 8.08 -25.75 -0.21 -2.00 16 26 C -0.13 -1.98 7.23 -26.28 -0.19 -2.17 16 27 C -0.16 -2.26 9.30 -39.03 -0.36 -2.63 16 28 C 0.16 2.06 6.77 -82.65 -0.56 1.50 16 29 C -0.10 -0.91 10.16 36.01 0.37 -0.55 16 30 N -0.53 -7.93 9.09 -9.59 -0.09 -8.02 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.16 2.80 6.53 -52.49 -0.34 2.46 16 35 H 0.41 7.53 4.28 -40.82 -0.17 7.35 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.38 8.93 5.17 -40.82 -0.21 8.72 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.15 1.92 7.74 -52.49 -0.41 1.51 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -30.18 400.85 -8.80 -38.98 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -7.37 Total: 18.03 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.46 Total: -2.20 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.12 Total: -61.97 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.11 Total: -15.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.18 -8.80 -38.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078711534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.971 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds