Wall clock time and date at job start Wed Apr 1 2020 04:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35682 * 117.00009 * 2 1 4 4 C 1.38899 * 119.62656 * 180.02562 * 3 2 1 5 5 C 1.39573 * 118.94629 * 179.97438 * 4 3 2 6 6 C 1.48162 * 120.88950 * 179.97438 * 5 4 3 7 7 O 1.21509 * 119.99874 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99590 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99539 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.88633 * 334.67101 * 9 8 6 11 11 C 1.53954 * 113.65721 * 106.01578 * 9 8 6 12 12 C 1.54146 * 87.22707 * 89.86472 * 11 9 8 13 13 H 1.08999 * 113.80809 * 139.15791 * 12 11 9 14 14 N 1.46499 * 113.57639 * 270.18169 * 12 11 9 15 15 C 1.36942 * 119.99716 * 252.18142 * 14 12 11 16 16 H 1.07998 * 119.99999 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99695 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00199 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46730 * 60.00058 * 19 17 15 21 21 H 1.48501 * 109.47194 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47165 * 300.00395 * 19 17 15 23 23 C 1.52906 * 113.66236 * 203.32274 * 9 8 6 24 24 C 1.52907 * 121.13720 * 144.62010 * 23 9 8 25 25 C 1.53956 * 86.78503 * 209.38073 * 24 23 9 26 26 C 1.52908 * 121.14082 * 36.05732 * 23 9 8 27 27 C 1.39966 * 118.21759 * 0.27614 * 5 4 3 28 28 C 1.37982 * 119.13314 * 359.45044 * 27 5 4 29 29 C 1.50700 * 119.50968 * 180.27305 * 28 27 5 30 30 N 1.31906 * 120.97480 * 0.56420 * 28 27 5 31 31 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46912 * 299.99152 * 1 2 3 33 33 H 1.08994 * 109.47567 * 59.99333 * 1 2 3 34 34 H 1.07998 * 120.51939 * 359.95692 * 4 3 2 35 35 H 0.97000 * 120.00748 * 0.02562 * 8 6 5 36 36 H 1.08999 * 113.57483 * 204.43148 * 11 9 8 37 37 H 1.08992 * 113.58410 * 335.22604 * 11 9 8 38 38 H 0.96995 * 119.99877 * 72.18404 * 14 12 11 39 39 H 0.97001 * 120.00162 * 180.02562 * 18 17 15 40 40 H 1.09005 * 113.66022 * 323.85208 * 24 23 9 41 41 H 1.09001 * 113.66746 * 94.90349 * 24 23 9 42 42 H 1.08994 * 113.57689 * 270.12977 * 25 24 23 43 43 H 1.08998 * 113.65135 * 139.34519 * 25 24 23 44 44 H 1.08994 * 113.66294 * 265.09463 * 26 23 9 45 45 H 1.09005 * 113.66080 * 36.04858 * 26 23 9 46 46 H 1.08001 * 120.43300 * 179.72877 * 27 5 4 47 47 H 1.08999 * 109.47596 * 270.28600 * 29 28 27 48 48 H 1.09004 * 109.46644 * 30.28788 * 29 28 27 49 49 H 1.09001 * 109.46944 * 150.28260 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2726 -0.0005 5 6 4.0513 2.5236 -0.0011 6 6 5.5283 2.6417 -0.0011 7 8 6.0500 3.7390 -0.0020 8 7 6.2929 1.5318 -0.0011 9 6 7.7533 1.6486 -0.0017 10 1 8.1034 2.5870 -0.4317 11 6 8.4006 1.3103 1.3536 12 6 8.4837 -0.1493 0.8649 13 1 9.4167 -0.6484 1.1265 14 7 7.2994 -0.9460 1.1946 15 6 7.3703 -1.9079 2.1667 16 1 8.2994 -2.0795 2.6899 17 6 6.2479 -2.6624 2.4796 18 7 5.1158 -2.4537 1.8416 19 14 6.3447 -3.9751 3.8051 20 1 6.7266 -3.3479 5.0958 21 1 5.0215 -4.6341 3.9467 22 1 7.3633 -4.9872 3.4261 23 6 8.4673 0.4153 -0.5561 24 6 9.7553 0.5465 -1.3697 25 6 9.3262 -0.7422 -2.0945 26 6 7.8770 -0.3845 -1.7179 27 6 3.2393 3.6636 0.0049 28 6 1.8679 3.5116 -0.0005 29 6 0.9856 4.7333 -0.0004 30 7 1.3178 2.3127 0.0000 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 4.0230 0.3683 -0.0003 35 1 5.8764 0.6558 -0.0015 36 1 9.3746 1.7771 1.5001 37 1 7.7320 1.4494 2.2030 38 1 6.4651 -0.7921 0.7245 39 1 4.3314 -2.9807 2.0605 40 1 9.7776 1.4247 -2.0150 41 1 10.6618 0.4329 -0.7752 42 1 9.6888 -1.6524 -1.6169 43 1 9.5151 -0.7238 -3.1678 44 1 7.2829 -1.2418 -1.4016 45 1 7.3699 0.2318 -2.4604 46 1 3.6804 4.6495 0.0091 47 1 0.7732 5.0281 1.0273 48 1 1.4942 5.5487 -0.5147 49 1 0.0512 4.5066 -0.5139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078711534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:18 Heat of formation + Delta-G solvation = 5.609077 kcal Electronic energy + Delta-G solvation = -31238.599226 eV Core-core repulsion = 27167.307152 eV Total energy + Delta-G solvation = -4071.292074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24544 -41.67557 -40.15795 -38.88338 -36.68172 -35.49818 -34.62733 -33.41909 -32.82695 -31.67408 -29.29839 -27.63538 -26.78237 -26.68312 -25.55120 -25.31043 -23.81341 -23.73581 -21.78639 -21.32160 -20.06939 -19.23529 -18.80008 -17.98642 -17.82252 -17.14023 -16.93619 -16.82419 -16.66315 -16.26646 -16.06574 -15.91441 -15.55440 -15.18466 -15.00964 -14.93863 -14.69135 -14.28412 -13.88800 -13.47454 -13.37339 -13.35190 -13.25141 -13.10780 -13.05172 -12.80686 -12.69079 -12.66465 -12.56153 -12.22319 -12.04899 -11.94979 -11.83927 -11.51029 -11.28783 -11.09665 -11.03553 -10.90816 -10.77923 -10.65409 -9.96378 -9.54076 -8.99784 -7.93717 -5.21568 -0.48613 0.00545 1.47778 1.48942 1.54840 1.67023 1.86096 2.06525 2.55343 2.64550 3.06459 3.32344 3.38313 3.45629 3.67683 3.78331 3.80800 3.90972 3.95079 4.00640 4.01844 4.16947 4.25349 4.38530 4.39963 4.41374 4.48500 4.58720 4.66103 4.71166 4.76592 4.80314 4.85777 4.86430 4.91740 4.96068 4.98472 5.04964 5.11876 5.14169 5.18204 5.25251 5.37023 5.49392 5.57093 5.61452 5.64371 6.16148 6.27420 6.34626 6.66913 6.95265 7.34975 8.07479 8.31156 9.28067 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007991 B = 0.004443 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.951672 B = 6300.251615 C = 8634.222780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.316 3.684 4 C -0.172 4.172 5 C -0.059 4.059 6 C 0.561 3.439 7 O -0.558 6.558 8 N -0.688 5.688 9 C 0.135 3.865 10 H 0.102 0.898 11 C -0.177 4.177 12 C 0.176 3.824 13 H 0.068 0.932 14 N -0.710 5.710 15 C -0.247 4.247 16 H 0.075 0.925 17 C -0.063 4.063 18 N -0.957 5.957 19 Si 0.965 3.035 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.278 1.278 23 C -0.121 4.121 24 C -0.090 4.090 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.156 4.156 28 C 0.161 3.839 29 C -0.098 4.098 30 N -0.528 5.528 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.403 0.597 36 H 0.108 0.892 37 H 0.041 0.959 38 H 0.372 0.628 39 H 0.251 0.749 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.164 0.836 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 11.534 -8.408 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.227 6.227 3 C 0.137 3.863 4 C -0.194 4.194 5 C -0.070 4.070 6 C 0.348 3.652 7 O -0.438 6.438 8 N -0.338 5.338 9 C 0.030 3.970 10 H 0.120 0.880 11 C -0.219 4.219 12 C 0.065 3.935 13 H 0.086 0.914 14 N -0.349 5.349 15 C -0.378 4.378 16 H 0.093 0.907 17 C -0.256 4.256 18 N -0.606 5.606 19 Si 0.795 3.205 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.205 1.205 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.177 4.177 28 C 0.025 3.975 29 C -0.155 4.155 30 N -0.254 5.254 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.242 0.758 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.101 0.899 46 H 0.181 0.819 47 H 0.114 0.886 48 H 0.120 0.880 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.588 11.761 -8.265 14.816 hybrid contribution -0.117 -1.493 0.975 1.787 sum -3.706 10.269 -7.289 13.127 Atomic orbital electron populations 1.23104 0.75456 1.04612 1.02640 1.86347 1.24817 1.24092 1.87427 1.19679 0.88939 0.85219 0.92417 1.21251 0.93258 0.98518 1.06338 1.20158 0.93334 0.93723 0.99770 1.18236 0.86444 0.84308 0.76171 1.90696 1.74701 1.26733 1.51648 1.45778 1.07142 1.08814 1.72096 1.21800 0.78298 0.99209 0.97711 0.87988 1.24252 1.01045 1.00298 0.96283 1.21148 0.90487 0.89983 0.91881 0.91421 1.42189 1.08779 1.40478 1.43446 1.19538 0.96200 1.10293 1.11783 0.90680 1.25397 0.95745 1.02279 1.02173 1.69736 1.01057 1.44335 1.45486 0.85345 0.76142 0.79528 0.79480 1.21019 1.22426 1.20464 1.23477 0.99157 0.94815 0.94848 1.22539 0.94593 0.98538 0.97129 1.22701 0.94851 0.97854 1.00951 1.22595 0.97803 0.99352 0.97165 1.22102 0.93615 0.99464 1.02514 1.21593 0.91915 0.92670 0.91365 1.20879 0.98688 0.91194 1.04720 1.67108 1.40900 0.98558 1.18877 0.86555 0.92208 0.91456 0.84919 0.75848 0.87353 0.93979 0.79354 0.94011 0.88026 0.89845 0.91066 0.89761 0.93552 0.89914 0.81864 0.88636 0.87953 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.38 113.37 1.18 2.04 16 2 O -0.32 -10.93 10.47 -90.00 -0.94 -11.87 16 3 C 0.32 10.82 7.49 84.80 0.63 11.45 16 4 C -0.17 -6.22 9.55 22.75 0.22 -6.00 16 5 C -0.06 -2.01 5.91 -19.90 -0.12 -2.12 16 6 C 0.56 20.43 7.80 86.88 0.68 21.10 16 7 O -0.56 -21.65 16.06 -3.74 -0.06 -21.71 16 8 N -0.69 -24.89 4.89 -443.72 -2.17 -27.06 16 9 C 0.13 4.45 4.09 45.28 0.19 4.63 16 10 H 0.10 3.22 7.50 -2.39 -0.02 3.20 16 11 C -0.18 -6.19 7.70 31.30 0.24 -5.94 16 12 C 0.18 6.64 4.37 45.35 0.20 6.84 16 13 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 14 N -0.71 -33.75 4.74 -321.24 -1.52 -35.27 16 15 C -0.25 -13.18 9.97 84.03 0.84 -12.34 16 16 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 18 N -0.96 -55.91 13.06 21.65 0.28 -55.63 16 19 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 C -0.12 -3.69 0.78 -52.31 -0.04 -3.73 16 24 C -0.09 -2.06 7.84 30.89 0.24 -1.82 16 25 C -0.13 -3.14 8.08 31.23 0.25 -2.88 16 26 C -0.13 -4.04 7.23 30.88 0.22 -3.81 16 27 C -0.16 -4.36 9.30 22.63 0.21 -4.15 16 28 C 0.16 4.05 6.77 42.49 0.29 4.34 16 29 C -0.10 -1.47 10.16 71.24 0.72 -0.75 16 30 N -0.53 -15.54 9.09 -297.17 -2.70 -18.24 16 31 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 33 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 34 H 0.13 5.31 6.53 -2.91 -0.02 5.29 16 35 H 0.40 15.82 4.28 -92.71 -0.40 15.42 16 36 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.37 18.54 5.17 -92.71 -0.48 18.06 16 39 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.74 7.58 -2.39 -0.02 1.73 16 45 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.16 3.97 7.74 -2.91 -0.02 3.95 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.10 8.08 -2.38 -0.02 1.08 16 49 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.15 400.85 1.44 -65.71 By element: Atomic # 1 Polarization: 52.65 SS G_CDS: 0.10 Total: 52.75 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 6.42 Total: 3.86 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -6.11 Total: -136.21 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.00 Total: -33.58 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.15 1.44 -65.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078711534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.319 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds