Wall clock time and date at job start Wed Apr 1 2020 04:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35426 * 117.00083 * 2 1 4 4 N 1.32237 * 119.80080 * 359.97438 * 3 2 1 5 5 C 1.31880 * 121.80239 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.40571 * 180.02562 * 5 4 3 7 7 C 1.38356 * 121.18462 * 359.97402 * 5 4 3 8 8 C 1.38339 * 119.46011 * 359.79058 * 7 5 4 9 9 C 1.39987 * 118.34506 * 0.47899 * 8 7 5 10 10 C 1.47527 * 120.59626 * 179.75633 * 9 8 7 11 11 O 1.21587 * 119.99894 * 179.71733 * 10 9 8 12 12 N 1.34771 * 119.99820 * 359.71800 * 10 9 8 13 13 C 1.46507 * 120.00138 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.88064 * 336.34110 * 13 12 10 15 15 C 1.54241 * 113.75079 * 107.77207 * 13 12 10 16 16 C 1.53955 * 87.18863 * 139.21780 * 15 13 12 17 17 H 1.08997 * 113.66205 * 220.75128 * 16 15 13 18 18 N 1.46498 * 113.66415 * 89.78569 * 16 15 13 19 19 C 1.36943 * 119.99752 * 105.73736 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.52905 * 86.88352 * 335.26925 * 16 15 13 28 28 C 1.52914 * 121.14057 * 259.22722 * 27 16 15 29 29 C 1.53950 * 86.78444 * 209.37767 * 28 27 16 30 30 C 1.52911 * 121.13968 * 150.66362 * 27 16 15 31 31 H 1.08997 * 109.46781 * 59.99889 * 1 2 3 32 32 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47073 * 300.00015 * 1 2 3 34 34 H 1.08999 * 109.47692 * 90.00069 * 6 5 4 35 35 H 1.09010 * 109.46631 * 209.99566 * 6 5 4 36 36 H 1.09000 * 109.47278 * 329.98933 * 6 5 4 37 37 H 1.08005 * 120.26951 * 180.02562 * 7 5 4 38 38 H 1.07999 * 120.83029 * 180.23243 * 8 7 5 39 39 H 0.97000 * 120.00377 * 0.02562 * 12 10 9 40 40 H 1.09004 * 113.58278 * 24.66765 * 15 13 12 41 41 H 1.08994 * 113.67408 * 253.78326 * 15 13 12 42 42 H 0.97001 * 120.00384 * 286.02091 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.66024 * 323.85226 * 28 27 16 45 45 H 1.08994 * 113.66194 * 94.90621 * 28 27 16 46 46 H 1.08995 * 113.58271 * 270.13143 * 29 28 27 47 47 H 1.08996 * 113.57661 * 139.32983 * 29 28 27 48 48 H 1.09005 * 113.65882 * 265.09435 * 30 27 16 49 49 H 1.08996 * 113.66010 * 36.14620 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 -0.0005 5 6 1.8771 3.5084 -0.0010 6 6 1.0000 4.7338 -0.0010 7 6 3.2526 3.6575 -0.0005 8 6 4.0588 2.5333 0.0049 9 6 3.4450 1.2752 -0.0005 10 6 4.2570 0.0435 -0.0004 11 8 3.7125 -1.0436 0.0000 12 7 5.6023 0.1234 -0.0009 13 6 6.4088 -1.0997 -0.0014 14 1 5.8743 -1.9600 0.4016 15 6 7.1101 -1.3809 -1.3461 16 6 8.3417 -1.8093 -0.5276 17 1 9.2871 -1.4666 -0.9481 18 7 8.3535 -3.2336 -0.1848 19 6 9.2018 -4.0878 -0.8374 20 1 9.8653 -3.7108 -1.6016 21 6 9.2090 -5.4384 -0.5167 22 7 8.4000 -5.8979 0.4143 23 14 10.3666 -6.6035 -1.4063 24 1 11.7703 -6.1740 -1.1816 25 1 10.1804 -7.9811 -0.8840 26 1 10.0692 -6.5819 -2.8611 27 6 7.8065 -0.9136 0.5901 28 6 8.3841 0.4818 0.8301 29 6 8.0048 0.2897 2.3097 30 6 8.0915 -1.2269 2.0594 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.7888 5.0296 1.0266 35 1 1.5121 5.5472 -0.5152 36 1 0.0647 4.5112 -0.5146 37 1 3.6934 4.6435 -0.0006 38 1 5.1350 2.6240 0.0092 39 1 6.0368 0.9907 -0.0008 40 1 7.2755 -0.4866 -1.9470 41 1 6.6588 -2.1950 -1.9132 42 1 7.7575 -3.5723 0.5015 43 1 8.4052 -6.8416 0.6387 44 1 9.4586 0.5460 0.6586 45 1 7.8265 1.2770 0.3353 46 1 6.9995 0.6350 2.5506 47 1 8.7582 0.6606 3.0046 48 1 7.3002 -1.7967 2.5466 49 1 9.0838 -1.6430 2.2334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078744697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:32 Heat of formation + Delta-G solvation = 24.553409 kcal Electronic energy + Delta-G solvation = -30576.448462 eV Core-core repulsion = 26505.977876 eV Total energy + Delta-G solvation = -4070.470586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19119 -40.43943 -38.47256 -38.22792 -35.04743 -34.12600 -33.37157 -32.21462 -31.98828 -29.59829 -28.69434 -27.13425 -25.54944 -24.67933 -24.13527 -23.42445 -23.15274 -22.47683 -20.46607 -20.11198 -18.77498 -18.20078 -17.33451 -17.02177 -16.82929 -16.28351 -15.62451 -15.30163 -15.19269 -14.77644 -14.61267 -14.50620 -14.37500 -14.26580 -14.00345 -13.36611 -13.02914 -12.88496 -12.76434 -12.60934 -12.57482 -12.42588 -12.08354 -11.91291 -11.87823 -11.67430 -11.49424 -11.26863 -10.91069 -10.80783 -10.63177 -10.23211 -10.22334 -10.17129 -10.05717 -9.87450 -9.69121 -9.54903 -9.33688 -8.80607 -8.75332 -8.52258 -6.94727 -5.75303 -3.04764 0.43883 0.96346 2.87487 2.87972 3.26637 3.45514 3.49949 3.51120 3.65366 3.83357 4.29250 4.55244 4.56455 4.68854 4.74651 4.83618 4.89268 4.94697 5.06092 5.10950 5.14260 5.15472 5.16813 5.17902 5.35839 5.47260 5.47721 5.54236 5.56178 5.65162 5.70458 5.76709 5.92794 6.01970 6.03695 6.05944 6.07270 6.11547 6.27606 6.42459 6.50922 6.66307 6.73818 6.78162 6.88034 7.04497 7.12207 7.48839 7.71282 7.74025 8.42882 8.43999 9.53836 10.11076 10.45491 11.46701 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.002592 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.245087 B =10799.284852 C =11830.278219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.267 6.267 3 C 0.377 3.623 4 N -0.547 5.547 5 C 0.189 3.811 6 C -0.108 4.108 7 C -0.221 4.221 8 C -0.007 4.007 9 C -0.211 4.211 10 C 0.559 3.441 11 O -0.513 6.513 12 N -0.713 5.713 13 C 0.155 3.845 14 H 0.116 0.884 15 C -0.183 4.183 16 C 0.186 3.814 17 H 0.067 0.933 18 N -0.701 5.701 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.128 4.128 28 C -0.109 4.109 29 C -0.142 4.142 30 C -0.114 4.114 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.392 0.608 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.800 24.922 1.265 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.171 6.171 3 C 0.196 3.804 4 N -0.272 5.272 5 C 0.051 3.949 6 C -0.165 4.165 7 C -0.241 4.241 8 C -0.032 4.032 9 C -0.218 4.218 10 C 0.344 3.656 11 O -0.388 6.388 12 N -0.365 5.365 13 C 0.051 3.949 14 H 0.134 0.866 15 C -0.226 4.226 16 C 0.073 3.927 17 H 0.085 0.915 18 N -0.339 5.339 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.130 4.130 28 C -0.147 4.147 29 C -0.179 4.179 30 C -0.151 4.151 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.227 0.773 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.869 23.571 1.181 26.881 hybrid contribution 1.178 -0.151 -0.295 1.224 sum -11.691 23.420 0.885 26.191 Atomic orbital electron populations 1.22957 0.77587 1.03408 1.02091 1.86580 1.22274 1.22794 1.85418 1.19836 0.88171 0.84926 0.87423 1.67275 1.40356 0.98209 1.21402 1.21161 0.92165 0.91977 0.89559 1.20816 0.99396 0.92770 1.03530 1.21707 0.93836 0.99889 1.08704 1.21616 1.00517 0.90525 0.90587 1.20134 0.91695 0.95246 1.14693 1.17779 0.82325 0.88139 0.77331 1.90862 1.71527 1.28256 1.48164 1.45975 1.05365 1.10031 1.75160 1.22344 0.88035 0.86896 0.97588 0.86571 1.24370 1.00875 1.00838 0.96469 1.20778 0.94710 0.85518 0.91682 0.91546 1.42089 1.46165 1.00675 1.44930 1.19203 1.14131 0.88928 1.15181 0.91098 1.24761 0.99725 0.97036 0.99183 1.69660 1.40359 1.14067 1.33609 0.86261 0.80442 0.80311 0.79099 1.21268 1.21722 1.21253 1.23491 0.95886 0.97051 0.96594 1.22510 1.00831 0.95127 0.96226 1.22873 1.00841 0.98016 0.96205 1.22545 1.02585 0.94849 0.95129 0.92338 0.88262 0.92334 0.89809 0.90106 0.90204 0.83966 0.83878 0.77258 0.91351 0.90848 0.77889 0.93370 0.89552 0.92538 0.90925 0.91957 0.91732 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.38 101.05 1.05 1.42 16 2 O -0.27 -4.07 8.58 -39.74 -0.34 -4.41 16 3 C 0.38 5.29 7.51 -16.61 -0.12 5.16 16 4 N -0.55 -6.45 9.11 -9.21 -0.08 -6.54 16 5 C 0.19 1.69 6.78 -82.53 -0.56 1.13 16 6 C -0.11 -0.57 10.16 36.00 0.37 -0.20 16 7 C -0.22 -1.71 9.71 -39.50 -0.38 -2.09 16 8 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 9 C -0.21 -2.82 5.90 -104.69 -0.62 -3.44 16 10 C 0.56 9.06 7.77 -12.48 -0.10 8.96 16 11 O -0.51 -10.62 14.79 -16.48 -0.24 -10.86 16 12 N -0.71 -10.01 5.24 -54.26 -0.28 -10.29 16 13 C 0.16 2.65 4.05 -67.32 -0.27 2.38 16 14 H 0.12 2.41 7.46 -51.93 -0.39 2.03 16 15 C -0.18 -3.30 7.71 -25.59 -0.20 -3.50 16 16 C 0.19 3.64 4.35 -67.48 -0.29 3.34 16 17 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 18 N -0.70 -17.38 5.11 -52.99 -0.27 -17.65 16 19 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C -0.13 -2.02 0.91 -154.71 -0.14 -2.16 16 28 C -0.11 -1.32 7.47 -26.28 -0.20 -1.52 16 29 C -0.14 -1.75 8.08 -25.75 -0.21 -1.96 16 30 C -0.11 -1.82 7.46 -26.28 -0.20 -2.01 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.26 8.07 -51.92 -0.42 -0.16 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.14 0.91 6.51 -52.49 -0.34 0.57 16 39 H 0.39 4.21 4.83 -40.82 -0.20 4.01 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.39 10.34 7.78 -40.82 -0.32 10.03 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.55 6.42 -51.93 -0.33 0.22 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -34.46 401.11 -9.43 -43.89 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.46 Total: 12.04 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.49 Total: -2.16 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.09 Total: -61.98 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.58 Total: -15.27 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.46 -9.43 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078744697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.442 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds